Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A21 F66 I1 R1
|
35 |
99.0 |
4347662 |
95.6% |
4156364 |
127.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
BS168_reference_genome |
2,387,885 |
(A)7→8 |
coding (704/735 nt) |
yphF ← |
putative lipoprotein of unknown function |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | BS168_reference_genome | 2,387,878 | 1 | . | A | 97.1%
| 234.7
/ ‑0.7
| 70 | coding (711/735 nt) | yphF | putative lipoprotein of unknown function |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base A (35/33); total (36/34) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TATATGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCAA > BS168_reference_genome/2387741‑2388010
|
tataTGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCt > 4:298507/1‑138 (MQ=255)
tataTGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCt > 4:36612/1‑138 (MQ=255)
atGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑aaa > 8:144579/1‑138 (MQ=255)
atGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCAGTCCTTTTTCATATCATTTTCT‑‑aaa > 4:45855/1‑138 (MQ=255)
gtgtATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑aaaa‑a > 5:474081/1‑138 (MQ=255)
gtgtATGACGTTGTCATATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTACCTATTTGTATTCAAGGCAGAAAGGTTCATTCCTTTTTCATATAATTTTCA‑‑taaa‑a > 5:518033/1‑138 (MQ=255)
tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑aaaa‑aaaa > 4:493099/1‑137 (MQ=255)
tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑aaaa‑aaaa > 5:33803/1‑137 (MQ=255)
tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑aaaa‑aaaa > 7:473673/1‑137 (MQ=255)
tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑aaaa‑aaaa > 1:226320/1‑137 (MQ=255)
tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑aaaa‑aaaa > 8:454803/1‑137 (MQ=255)
tATGACGTAGTCCTATTTGAATATGACATCTTTAGAAAATATCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCATTTTTCATATCATATTCT‑‑aaaa‑aaaa > 3:243331/1‑137 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCCTCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑aaaa‑aaaacag > 6:250304/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑aaaa‑aaaacag > 5:104501/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑aaaa‑aaaacag > 1:529569/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑aaaa‑aaaacag > 7:168042/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑aaaa‑aaaacag > 3:361629/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑aaaa‑aaaacag > 6:434286/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑aaaa‑aaaacag > 1:205487/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCACTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑aaaa‑aaaacag > 2:204300/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCACAATCTATTAATATAAAAAAACCTTTCTCCCTTTTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑aaaa‑aaaacag > 8:127339/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAAGATGACTTCTTTAGATAATTTGTCATCCTCATTCTATTAATATAAAAAAACATTTCTCCCTATATGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑AAAATAAA‑CAg > 1:299324/1‑139 (MQ=255)
tGACCTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATATGTATGCAAGGCAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑aaaa‑aaaacag > 4:61322/1‑135 (MQ=255)
tGAAGTTGTCCTAATTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑aaaa‑aaaacag > 4:409997/1‑135 (MQ=255)
ttGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTcc > 3:156752/1‑139 (MQ=255)
tGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGt > 2:215520/1‑135 (MQ=255)
tGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGt < 1:215520/135‑1 (MQ=255)
tGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTcgt > 7:159735/1‑137 (MQ=255)
tGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCt > 5:60730/1‑139 (MQ=255)
tGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCt > 1:264332/1‑139 (MQ=255)
gTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTg > 3:62707/1‑139 (MQ=255)
gTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTg > 1:287203/1‑139 (MQ=255)
tCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGt > 5:249405/1‑139 (MQ=255)
tCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGt > 5:417084/1‑139 (MQ=255)
tCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGt < 1:19425/139‑1 (MQ=255)
tCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGt < 8:69363/139‑1 (MQ=255)
tCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGt < 2:213319/139‑1 (MQ=255)
tCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACATTTCTCCCTAGTTGTCTGCAAGGGAGAAAGGTTCGTTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCATGt > 6:79410/1‑139 (MQ=255)
tCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAAACTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCATGt > 6:127810/1‑139 (MQ=255)
tttGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCATTAAGCCAAATTTTATTGAAGGGTGCAAAGTTGCTTGCATTTTGAAAATATTTTATA‑AAAA‑AAA‑CAGGTTACTTTTTGt > 2:17025/1‑138 (MQ=255)
tGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCAt > 7:527852/1‑139 (MQ=255)
gAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCAt < 8:527852/138‑1 (MQ=255)
gAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCAt < 6:249405/138‑1 (MQ=255)
atatGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTa > 3:86399/1‑139 (MQ=255)
tGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTAcc < 1:334666/138‑1 (MQ=255)
tGACATCTTTAGAAAAATTCTCATCCTCAATCTATTAATATAAAAAAACCATTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTAcc < 8:37603/138‑1 (MQ=255)
agaTCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGATCATTCCTTTTTAATATCATTTTCTA‑AAAA‑AAA‑AAGGAACTTGTGTGTAATTTACGGta > 3:21054/3‑139 (MQ=255)
aCATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGta > 2:98494/1‑139 (MQ=255)
aCATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGta > 5:409179/1‑139 (MQ=255)
aCATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGt < 6:33803/138‑1 (MQ=255)
aCATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTAGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGCTACCTGTTTGTCATTTACCGta > 8:203495/1‑139 (MQ=255)
aGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTa < 1:98494/138‑1 (MQ=255)
aGAAAATTTCTCATCATCAATCTATTAAAATAATAAAACCTTTCTCCCTATTTGTATGCTAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CATGTTCCTGTTTGTCATTTACCGTATATTTTa < 7:203495/138‑1 (MQ=255)
ctcATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAAcg < 7:53837/138‑1 (MQ=255)
ctcATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAAcg < 4:186520/138‑1 (MQ=255)
aTCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAAcgcg < 3:298507/137‑1 (MQ=255)
aTCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAAcgcg < 4:156752/137‑1 (MQ=255)
aTCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAAcgcg < 4:361629/137‑1 (MQ=255)
aTCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAAcgc < 4:86399/136‑1 (MQ=255)
aTCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAAcgc < 5:434286/136‑1 (MQ=255)
ttAATATAAAAATACCTTTCTCCCTATTTGTATGCAAGGGTGATAGGTTAATTCATTTTTCATATCATTTTCTA‑AAAA‑AAA‑CATGTTGCTGTTTGTAATTTACCGTATATTTTACAGAAAACGCGGGGTCAAAgg < 6:518033/135‑1 (MQ=255)
ttAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGt > 7:173248/1‑139 (MQ=255)
ttAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGt > 6:326461/1‑139 (MQ=255)
atatAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGttt < 8:473673/138‑1 (MQ=255)
taAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGCCAAAGGGGGTTTCATg > 2:176046/1‑139 (MQ=255)
aaaaaaCCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGcc < 1:17025/139‑1 (MQ=255)
aaaaaaCCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGc > 7:121456/1‑138 (MQ=255)
aaaaaaCCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTGCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGcc < 1:527785/139‑1 (MQ=255)
ttGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGAttt < 8:168042/138‑1 (MQ=255)
gTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAg > 7:375662/1‑139 (MQ=255)
tATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGt > 5:328717/1‑139 (MQ=255)
aTGCAAGGGAGAAAGGTTCGTTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTCTCATTTACCGTATAATTTACAGAAAAAGCGGGGACAAAGGGTGTTTAATGACAAATCAATTCATCGATTTCAGTc > 8:64724/1‑139 (MQ=255)
aTGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTc > 3:465555/1‑139 (MQ=255)
tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTg < 3:208022/128‑1 (MQ=255)
tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTg > 4:208022/1‑128 (MQ=255)
tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTcc > 6:229061/1‑139 (MQ=255)
tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCAGTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCCGTcc > 2:82024/1‑139 (MQ=255)
cAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTccc < 6:328717/138‑1 (MQ=255)
aGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTACTGTTTGTCATTTACCGTATATTTTACAGAAAACTCGGGGACAAAGGGTGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCggt > 1:443280/1‑138 (MQ=255)
gggAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGt > 3:153720/1‑139 (MQ=255)
aaaGGTTCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTaaa > 5:469404/1‑139 (MQ=255)
ttCATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAAAGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGttt > 4:406670/1‑139 (MQ=255)
cATTCCTTTTTCATATCATTTTCTAAAAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGtttt > 5:216553/1‑139 (MQ=255)
cATTCCTTTTTCATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGttttt > 2:328705/1‑139 (MQ=255)
cATATCATTTTCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACG‑TTTTTTGCttttttt < 7:454803/138‑1 (MQ=255)
ttttCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCaa < 1:204300/139‑1 (MQ=255)
ttttCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCaa < 4:229522/139‑1 (MQ=255)
ttttCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCaa < 8:375662/139‑1 (MQ=255)
ttttCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCaa < 8:159735/139‑1 (MQ=255)
ttttCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCaa < 5:176768/139‑1 (MQ=255)
ttttCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCaa < 2:205487/139‑1 (MQ=255)
ttttCTA‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCaa < 6:417084/139‑1 (MQ=255)
ttttCT‑‑AAAA‑AAACCAGCTTCCTGTTTGTCAATTACCGTATATATTACAGAAAACGCGGGGACAAAGGGCGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCaa < 4:54878/139‑1 (MQ=255)
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TATATGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑AAAA‑AAA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCAA > BS168_reference_genome/2387741‑2388010
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
