Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A24 F31 I1 R1
|
16 |
84.1 |
2897778 |
94.0% |
2723911 |
143.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913_3_pae_tpiA |
2,817,170 |
C→A |
E112* (GAA→TAA) |
yqaB ← |
fructose‑1‑P and 6‑phosphogluconate phosphatase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913_3_pae_tpiA | 2,817,170 | 0 | C | A | 98.9%
| 291.9
/ NA
| 91 | E112* (GAA→TAA) | yqaB | fructose‑1‑P and 6‑phosphogluconate phosphatase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base A (43/47); minor base G (1/0); total (44/47) |
| Fisher's exact test for biased strand distribution p-value = 4.84e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGTCGGTTGCACGCCCATACGCTGCGCGCACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTCACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTGCTTCTGTTTTTTCACGCGCTAACGCATGCGGGTCGAGATCGGCC > NC_000913_3_pae_tpiA/2817024‑2817315
|
cGTCGGTTGCACGCCCATACGCTGCGCGCACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAAc < 1:529536/149‑1 (MQ=255)
tCGGTTGCACGCCCATACGCTGCGCGCACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGCCGACGGCGTAAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCCGCGATGGAGCTTTAACTc > 1:1022552/1‑149 (MQ=255)
tCGGTTGCACGCCCATACGCTGCGCGCACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATCATGGCGTAATCCCAGGTGCGGCCGCAATGCCTCAGCGATGGCGCTTTAACTc > 2:520851/1‑149 (MQ=255)
tCGGTTGCACGCCCATACGCTGCGCGCACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTc > 2:155916/1‑149 (MQ=255)
tCGGTTGCACGCCCATACGCTGCGCGCACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTc > 2:148284/1‑149 (MQ=255)
cGGTTGCACGCCCATACGCTGCGCGCACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTcc < 2:563998/149‑1 (MQ=255)
ggTTGCACGCCCATACGCTGCGCGCACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTccc < 1:791284/149‑1 (MQ=255)
ttGCACGCCCATACGCTGCGCGCACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGGCGTGAGCGGCGGAGGCGACGGCTTCAAAATAATGGAGTAATCCCAGATCCACCAGCAATGCCGCAGCGATGGCGCTTTAACTCCCCg > 1:126403/1‑149 (MQ=255)
cACGCCCATACGCTGCGCGCACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTc < 2:811065/149‑1 (MQ=255)
cACGACCATACGCTGCGCGCACAAAAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTc < 2:488317/149‑1 (MQ=255)
aCGCCCATACGCTGCGCGCACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTcc < 1:155916/149‑1 (MQ=255)
aCGCCCATACGCTGCGCGCACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTcc < 1:148284/149‑1 (MQ=255)
aCGCCCATACGCTGCGCGCACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTcc > 1:1295831/1‑149 (MQ=255)
aCGCCCATACGCTGCGCGCACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATAGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCGGCAATGCCTCACCGATGGCGCTTTAACTCCCCGTTcc > 1:1424863/1‑149 (MQ=255)
ccATACGCTGCGCGCACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACa > 2:144810/1‑149 (MQ=255)
ccATACGCTGCGCGCACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTCTGAAGTGATCGGCAGCGGCGACGGCGGCAAAATAATGGAGTAATCCCAGATGCGCCAGCAATGCCTCCACGATTGCGCTTTATCTCCCCGTTCCTCCa > 2:1356692/1‑149 (MQ=255)
gttACGGTGCGCTCACAACAAAAATGTGTCTGGCGCGCGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAg < 2:1204861/147‑1 (MQ=255)
cagaCGCGGCGCGCACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGACAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAg < 1:111575/146‑1 (MQ=255)
aTACGCTGCGCGCACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGc < 2:1227730/149‑1 (MQ=255)
aCGCTGCGCGCACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCa > 1:15994/1‑149 (MQ=255)
gCTGCGCGCACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCAtt < 1:574354/149‑1 (MQ=255)
tGCGCGCACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTgg < 1:415703/149‑1 (MQ=255)
taccggacaaaaAAAGAGTGTCTGGCGCGGGTTTATGGCGTTTGACGTGATCGGCAGCGACGACGTCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTggg < 1:105976/143‑1 (MQ=255)
cgcgcACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGc < 1:144810/149‑1 (MQ=255)
cgcgcACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTAAAAATAATGGCGTAATTCCAGGTGAGCCAGCAATGCCTCAGCGATAGCGCTTTAACTCCCCGTTCCTACAGACATTGGGc > 1:1285463/1‑149 (MQ=255)
cgcACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAAGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGcga < 1:1005506/149‑1 (MQ=255)
gcACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGcgac > 1:473289/1‑149 (MQ=255)
acaacaAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGcgacga > 1:799001/1‑149 (MQ=255)
aaaaTGTGTCGGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGc < 1:255590/149‑1 (MQ=255)
aaaTGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGcc > 2:1301158/1‑149 (MQ=255)
tgtgTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATCGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAAc < 1:196477/149‑1 (MQ=255)
tgtCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACtt > 2:1024874/1‑149 (MQ=255)
tgtCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACtt < 1:1301158/149‑1 (MQ=255)
cgcgGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCGCAAGTGCGCCAGCACTGCCTCACGGTTGGCGCTTTAACTCCCCGTTCCTACAGCCCTTGGACGACGACCATGCGCACTTTTcactc > 1:1424498/1‑147 (MQ=255)
gcgGGTGTATGGAGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTcaccac > 2:860220/1‑149 (MQ=255)
gcgGATTTATGGTGTTTAACGTCATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCATCGATGGCGCCTTAACCCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTcaccac < 2:949004/149‑1 (MQ=255)
tGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGATGACCATGCCAACTTTTCACCACATCAACAag > 1:983151/1‑149 (MQ=255)
ggTGTTTGCCGTGATCGCCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAaga < 1:24874/149‑1 (MQ=255)
ggTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAaga < 1:822748/149‑1 (MQ=255)
tgtTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAgg < 2:1115424/149‑1 (MQ=255)
tttGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACCTCAACAAGAGGaa > 1:883995/1‑149 (MQ=255)
gACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCg < 1:741450/149‑1 (MQ=255)
aCGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCTCCGTTACTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCgg < 1:1138182/149‑1 (MQ=255)
aCGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACtt < 2:1338543/123‑1 (MQ=255)
aCGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACtt > 1:1338543/1‑123 (MQ=255)
gTGATCGGCAGCGGTGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGtt < 1:746410/149‑1 (MQ=255)
gTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGACAGCAGtt > 2:535054/1‑149 (MQ=255)
gCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCt > 1:1373722/1‑149 (MQ=255)
gacgacGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCACTGCCTCAGCGATGGCGCTCTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCca < 1:1097601/149‑1 (MQ=255)
aaaaTAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATActtc > 1:235386/1‑149 (MQ=255)
aaaaTAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATActtc > 1:1175883/1‑149 (MQ=255)
aaaTAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATActtct > 2:596741/1‑149 (MQ=255)
aaaTAATGGCGTAATCACAGGCGCGCCAGCAATGCCTCAGCGATGGCGCTTCGACTCCCGGTTCCTACAGCCAGTAGGGGACGACCATGCCAACTTTTCACCACCACAACAAGAGGAAGCGGTACGACGCTATCCCGCAGC‑CTActcct > 2:896781/1‑149 (MQ=255)
ataatGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTa < 1:520851/149‑1 (MQ=255)
agaatGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTa < 2:447566/147‑1 (MQ=255)
taatGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTag > 1:299707/1‑148 (MQ=255)
atGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTg < 1:1109247/149‑1 (MQ=255)
gCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCCCATCATCAAGAGGGAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTGCtt > 2:419186/1‑149 (MQ=255)
cccAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACTACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTGCTTCTGtttt < 1:515621/149‑1 (MQ=255)
ccAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAaga > 2:502235/1‑98 (MQ=255)
ccAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAaga < 1:502235/98‑1 (MQ=255)
ccAGGTGCGCCAGCAATGCATCAGCGATGGCCCTTTAACTCCCCGTTCCTCCAGCCATAGCGCGACGAAAATACCAACTTTTCACCACATCAACAAAAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTGCTGCGGttttt > 2:417950/1‑149 (MQ=255)
cAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTGCTTCTGtttttt > 1:620570/1‑149 (MQ=255)
gTGCGCCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTCTCCCGAAGC‑AAACTCCTGAATGCTTCTGttttttacc > 1:30414/1‑146 (MQ=255)
ggggcAGCAATGCCTCGGCGATGTCGCTTTACCTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTGCTTCTGTTTTTTCAcgc < 1:208713/145‑1 (MQ=255)
gcgcCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTGCTTCTGTTTTTTCAcgc < 1:100199/149‑1 (MQ=255)
gcCAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTCGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTGCTTCTGTTTTTTCACgcgc < 2:1342348/149‑1 (MQ=255)
ccAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTGCTTCTGTTTTTTCACGCGCt < 1:1176831/149‑1 (MQ=255)
ccAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTGCTTCTGTTTTTTCACGCGCt > 1:1149676/1‑149 (MQ=255)
cAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTg > 1:1095794/1‑128 (MQ=255)
cAGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTg < 2:1095794/128‑1 (MQ=255)
aGCAATGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTGCTTCTGTTTTTTCACGCGCTaa > 2:1389879/1‑149 (MQ=255)
ggaaTGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTGCTTCTGTTTTTTCACGCGCTAAc < 1:593715/147‑1 (MQ=255)
aaTGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCAtt < 2:894216/45‑1 (MQ=255)
aaTGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCAtt < 2:894208/45‑1 (MQ=255)
aaTGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCAtt > 1:894208/1‑45 (MQ=255)
aaTGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCAtt > 1:894216/1‑45 (MQ=255)
aaTGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTGCTTCTGTTTTTTCACGCGCTAACGc > 1:1280655/1‑149 (MQ=255)
aTGCCTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTGCTTCTGTTTTTTCACGCGCTAACGCa < 2:1175883/149‑1 (MQ=255)
cTCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTGCTTCTGTTTTTTCACGCGCTAACGCATGCg > 2:1070409/1‑149 (MQ=255)
tCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCAt > 2:390376/1‑52 (MQ=255)
tCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCAt < 1:390376/52‑1 (MQ=255)
tCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTGCTTCTGTTTTTTCACGCGCTAACGCATGCgg > 1:266675/1‑149 (MQ=255)
tCAGCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTCGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCCGC‑ATACTTCTTACTGCTTCTGTTTTTCTCCGCGCTAACCCATGCgg > 2:435840/1‑149 (MQ=255)
cacgCGATGGCGCTTTAGCTCTCCTTACCTACAGCCAGTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTGCTTCTGTTTTTTCACGCGCTAACGCATGCgg < 2:1022552/146‑1 (MQ=255)
gCGATGGCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTGCTTCTGTTTTTTCACGCGCTAACGCATGCGGGTc < 2:1149676/149‑1 (MQ=255)
gCGATGCCGCTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTGCTTCTGTTTTTTCACGCGCTAACGCATGCGGGTc < 2:15994/149‑1 (MQ=255)
tGGCGCTGTAAGGCCGCGTTCCCACAGCCATTGGGTGACGACCATGCCAACTTTTCGCTACATCATCAAGATTGAGCGGTTCTACGCTATCCAGCAGT‑ATAGTGCTTACGGCTTTTGTTTTTTCACGCGCTAACGCATGCGGGTCgaga < 2:329753/149‑1 (MQ=255)
cTTTAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTGCTTCTGTTTTTTCACGCGCTAACGCATGCGGGTCGAGATCGGc < 2:266675/149‑1 (MQ=255)
tttAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTGCTTCTGTTTTTTCACGCGCTAACGCATGCgg > 1:143218/1‑136 (MQ=255)
tttAACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATACA‑CAGCTATATTTCTTACTGCTTCTGTTTTTTCACGCGCTAACGCATGCGGGCCGAGATCGGcc > 1:1420584/1‑149 (MQ=255)
|
CGTCGGTTGCACGCCCATACGCTGCGCGCACAACAAAAATGTGTCTGGCGCGGGTTTATGGTGTTTGACGTGATCGGCAGCGACGACGGCGTCAAAATAATGGCGTAATCCCAGGTGCGCCAGCAATGCCTCAGCGATGGCGCTTTCACTCCCCGTTCCTACAGCCATTGGGCGACGACCATGCCAACTTTTCACCACATCAACAAGAGGAAGCGGTTCGACGCTATCCAGCAGC‑ATACTTCTTACTGCTTCTGTTTTTTCACGCGCTAACGCATGCGGGTCGAGATCGGCC > NC_000913_3_pae_tpiA/2817024‑2817315
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
