Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F27 I0 R1 191 118.8 2757226 85.6% 2360185 223.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,828,506 T→G 22.1% V257G (GTG→GGG)  srlD → sorbitol‑6‑phosphate dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,828,5060TG22.1% 107.0 / 2.0 52V257G (GTG→GGG) srlDsorbitol‑6‑phosphate dehydrogenase
Reads supporting (aligned to +/- strand):  ref base T (9/29);  new base G (11/3);  total (20/32)
Fisher's exact test for biased strand distribution p-value = 7.74e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGGTGCATTCACTGATGCTCGGTAACCTGCTGAAATCGCCGATGTTCCAGTCACTGTTGCCACAATACGCGACCAAGCTGGGTATCAAACCGGATCAAGTCGAGCAGTATTACATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAG‑ACTATAGAATGCCTGATGCGCTACGCTCATCAGGCATAC‑AGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCCTGGTGTGCGCAACTGGCCTTAGGCGGCTGGCAAATTTCTCGTTTTAACCGTGCCTTCGACACACTATGCCAGCAAGGGCGGGT  >  NC_000913/2828269‑2828739
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                           
cGGTGCATTCACTGATGCTCGGTAACCTGCTGAAATCGCCGATGTTCCAGTCACTGTTGCCACAATACGCGACCAAGCTGGGTATCAAACCGGATCAAGTCGAGCAGTATTACATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTg                                                                                                                                                                                                                                            >  1:5188/1‑239 (MQ=255)
cGGTGCATTCACTGATGCTCGGTAACCTGCTGAAATCGCCGATGTTCCAGTCACTGTTGCCACAATACGCGACCAAGCTGGGTATCAAACCGGATCAAGTCGAGCAGTATTACATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTg                                                                                                                                                                                                                                            >  1:942254/1‑239 (MQ=255)
   tGCATTCACTGATGCTCGGTAACCTGCTGAAATCGCCGATGTTCCAGTCACTGTTGCCACAATACGCGACCAAGCTGGGTATCAAACCGGATCAAGTCGAGCAGTATTACATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAAGGTCACC‑GGCGGGCA‑GGGGATg                                                                                                                                                                                                                                         >  1:437505/1‑239 (MQ=255)
     cATTCACTGATGCTCGGTAACCTGCTGAAATCGCCGATGTTCCAGTCACTGTTGCCACAGTACGCGACCAAGCTGGGTATCAAACCGGATCAAGTCGAGCAGAATTACATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATCGGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGCCAGTCGACCAATGTCACC‑GGCGGGCA‑GGGGATgat                                                                                                                                                                                                                                       >  2:242298/1‑237 (MQ=255)
     cATTCACTGATGCTCGGTAACCTGCTGAAATCGCCGATGTTCCAGTCACTGTTGCCACAATACGCGACCAAGCTGGGTATCAAACCGGATCAAGTCGAGCAGTATTACATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCC‑GGGGACGtg                                                                                                                                                                                                                                       >  1:910298/1‑238 (MQ=255)
             gATGCTCGGTAACCTGCTGAAATCGCCGATGCTCCAGTCACTGTTGCCACAATACGCGACCAAGCTGGGTATCAAACCGGATCAAGTCGAGCAGTATTACATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GTCGGGCACGGTG‑TGTTCTGATCaa                                                                                                                                                                                                                               >  1:475786/1‑239 (MQ=255)
                 cTCGGTAACCTGCTGAAATCGCCGATGTTCCAGTCACTGTTGCCACAATACGCGACCAAGCTGGGTATCAAACCGGATCAAGTCGAGCAGTATTACATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGGGATGTTCTGATCAACAGc                                                                                                                                                                                                                           >  1:1174668/1‑239 (MQ=255)
                       ttccTGCTAAAATCGCCGATGTTCCAGGCCCTTTTGCCACCATTAGCGACCAAGCTGGGTATAAAACCGGGGCAAGTCGAGGAATAGTACATAGACAAAATGCCGCTCAAACGCGGCTGCGATTATCAAGGTGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGAGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGgaga                                                                                                                                                                                                                      <  2:727339/236‑1 (MQ=255)
                       aaCCGGCTGAAATCGCCGTTGTTCCAGTCACTGGTGCCACAATACGCGACCAAGCTGGGTAACAAACCGGATCAAGTCGAGCAGTATTACATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGgaga                                                                                                                                                                                                                      <  1:1071305/238‑1 (MQ=255)
                            ttctgaaaggCCCATGTTTCGGTCCCTGTTGCCCCAAAACGGCACCAAGCTGGGTATCAAACCGGATCAAGGCGAGCAGTATTACTTCGACAAAGTTCCGGTCAAACGCGGCTGCGATTATCAAGATTTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCAtt                                                                                                                                                                                                                <  2:910298/230‑1 (MQ=255)
                                       cGATTTTCCCGTTCCTGTTGCCCCAATACCCGACCAAGCTGGGTATCAAACCGGATCAAGTCGAGCAGTATTACATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCg                                                                                                                                                                                                     <  2:1109497/239‑1 (MQ=255)
                                       cGATGTTCCAGTCACTGTTTCCACAATACGCGACCAAGCTGGGTATCAAACCGGATCAAGTCGAGCAGTATTACATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCg                                                                                                                                                                                                     <  1:968551/239‑1 (MQ=255)
                                       cGATGTTCCAGGCACTGGTGCCCAAATACGCGAACAAGCTGGGTTACAAACCGGATTAAGTCGAGCAGTATTACATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCg                                                                                                                                                                                                     <  1:623468/239‑1 (MQ=255)
                                        gATGTTCCCGTCACTGGTGCCACAATACGCGACCAAGGTGGGTATCAAACCGGATCAAGTCGAGCAGTATTACATCGCAAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGt                                                                                                                                                                                                    <  1:162460/239‑1 (MQ=255)
                                          tGTTCCAGGCACTGTTGCCACAATACGCGACCAAGCTGGGTATCAAACCGGATCAAGGCGAGCAGTATTACATCGACAAAGTGCCGATCAAACGAGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCCCCGGACAGTCGATCAAGGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTga                                                                                                                                                                                                  <  1:154975/239‑1 (MQ=255)
                                                    aCTGTTGCCACAATACGCGACCAAGCTGGGTATCAAACCGGATCAAGTCGAGCAGTATTACATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGCGCTGAATATGATGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTAACC‑GGCGGCCA‑GAGGCGATTCTGGTCACAAGCGGAGATCACTTAAGGATCCCCGCGAG‑ACTATTGaa                                                                                                                                                                                       >  1:557805/1‑239 (MQ=255)
                                                     atGTTGCCAAAATACGCGACCAAGCTGGGTATCAAACCGGATCAAGTCGAGCAGTATTACATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAG‑ACTATAGAAt                                                                                                                                                                                      <  1:452259/238‑1 (MQ=255)
                                                                aTACGCGACCAAGCTGGGTATCAAACCGGATCAAGTCGAGCAGTATTACATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGGGTTGTTCTGATCAACAACGGGGAACCATTAAGGATTTCCGCGGG‑ACAATAGAATGCCTCAtcgg                                                                                                                                                                            >  1:590781/1‑235 (MQ=255)
                                                                  tcgcgACCAACCGGGGTATCAAACCGGATCAAGTCGGGCAGTATTACATCGACAAAGTACCGCTTAAACGGGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAG‑ACTATAGAATGCCTGATGCGCTa                                                                                                                                                                         <  2:571770/238‑1 (MQ=255)
                                                                    gcgACCAAGCTGGGTATCAAACCGGATCAAGTCGAGCAGTATTACATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGGGATGTTCTGGTCAAAAACGGGGATCCATTAAGGGTTTCCCGGGG‑ACTATAACATGCCTTATGTGGTAc                                                                                                                                                                        >  1:235275/1‑238 (MQ=255)
                                                                          aaGCTTGGTATCAAACCGGATCAAGTCGAGCAGTATTACATCGACAAAGTTCCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAG‑ACTATAGAATGCCTGATGCGCTACGCtcatc                                                                                                                                                                 <  1:459040/239‑1 (MQ=255)
                                                                             cTGGGTATCAAACCGGATCAAGTCGAGCAGTATTACATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAG‑ACTATAGAATGCCTGATGCGCTACGCtcat                                                                                                                                                                  <  1:1172366/235‑1 (MQ=255)
                                                                              tGGGTATCAAACCGGATCAAGTCGAGCAGTATTACATCGACAAAGTCCCGCTCAAACGGGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAG‑ACTATAGAATGCCTGATGCGCTACGCTCATCAg                                                                                                                                                               <  1:162306/237‑1 (MQ=255)
                                                                              cgggTTTCAAACCGGATCAAGGCGAGCAGTATTTCATCGACAAAGTGCCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAG‑ACTATAGAATGCCTGATGCGCTACGCTCATCAg                                                                                                                                                               <  2:590781/236‑1 (MQ=255)
                                                                                ggTATCAAACCGGATCAAGTCGAGCAGTATTACATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAG‑ACTATAGAATGCCTGATGCGCTACGCtcatc                                                                                                                                                                 <  1:164950/233‑1 (MQ=255)
                                                                                    tCAAACCGGAACAAGTCGGGCAGTTTTACATCGACAAAGTACCGCTCAAAAGCGGCTGCGATTATCAAGATGTGCTTAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAG‑ACTATAGAATGCCTGATGCGCTACGCTCATCAGGCATAC‑a                                                                                                                                                       <  1:1246614/238‑1 (MQ=255)
                                                                                       aaCCGGATCAAGTCGAGCAGTATTACATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAAGGGAGGTCCCTTAAAGGACTCCCCGGG‑GCTATAGAATGCCCGATGCGCCACGCTCATCAGGCATAC‑Agg                                                                                                                                                     >  1:1104747/1‑237 (MQ=255)
                                                                                             aTCAAGTCGAGCAGTATTACATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCg                                                                                                                                                                                                     <  1:994961/185‑1 (MQ=255)
                                                                                               cAAGTCGAGCAGTTTTACATCGACAAAGTCCCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGTTGTTCTACGCCAGTCCTAAGGCGTCGTCCTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAG‑ACTATAGAATGCCTGATGCGCTACGCTCATCAGGCATAC‑AGGACTTCCGCCa                                                                                                                                           <  1:1101839/239‑1 (MQ=255)
                                                                                                           tATTACATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCg                                                                                                                                                                                                     <  1:850932/171‑1 (MQ=255)
                                                                                                            tttcacgcGAAAAAGTACGGTGAAACCGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTTTTCTACCCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAG‑ACTATAGAATGCTTGATGCGCTACGCTCATCAGGCATAC‑AGGACTTCCGCCACTACATTAAGGa                                                                                                                               <  1:242298/231‑1 (MQ=255)
                                                                                                            aTTACTCCGAAAAAGCGCCGCACAAACGGGGCTGGATTTCACAAGAGGTGCAGAATATGGTGGTGTTCTGCCCCAGTCGTAGGGGGTGGTACTGCACGGGACAGTCGATAAATGTCACC‑GGGGGTCA‑GGTGATGTTCTGATCAACAGGGGAGATCCATTAAGGATCCCCGTGAG‑ACTATAGAATGCCTGATGCGCTACGCTCATCAGGCATAC‑AGGACTTCCGCCACTACATTAAGGaa                                                                                                                              <  2:1174668/239‑1 (MQ=255)
                                                                                                            aTTACACCGACAAATTTCCGGTCAAACGGGGCTGCGATTATCAAGATGGGCTGAATATGCTGCTTTTCTACGCCAGTCCTAGGGCGTCGTACTGCACCGGGCAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAG‑ACTATAGAATGCCTGATGCGCTACGCTCATCAGGCATAC‑AGGACTTCCGCCACTACATTAAGGaa                                                                                                                              <  1:1301136/239‑1 (MQ=255)
                                                                                                                cATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAG‑ACTATAGAATGCCTGATGCGCTACg                                                                                                                                                                       <  1:224272/195‑1 (MQ=255)
                                                                                                                     aCAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGGGCTGTTCTGATCACCAGCGGTGATCCATTAAGGATCTCCGTGGG‑ACTATATAATACCTGATGCGCCACGCCCATCAGACACACAAGGATTTCCCCCACCACAAAAAGAaaaaaaaggg                                                                                                                      >  2:30472/1‑233 (MQ=255)
                                                                                                                               gCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGGGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGGGGG‑ACTATAGAATGCCAGATGCGCTACGCTCATCAGGCATAC‑AGGACTTCCGCCCCTCCATTAAGGAAAAGTTATGGGATCCGcca                                                                                                            >  1:852683/1‑236 (MQ=255)
                                                                                                                                cTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATAAACAGCGGGGATCCATTAAGGATCTCCGTGAG‑ACTATAGAATGCCTGATGCGCTACGCTCATCAGGCATAC‑AGGACTTCCGCCACTCCATTAAGGAAAAGGTATGGGATcccccct                                                                                                           >  1:1276161/1‑233 (MQ=255)
                                                                                                                                cTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGGGATGTTCTGATCAACAGCGGAGATCCATTAAGGGTCTCCGTGAG‑ACTATAGAATGCCTGATGCGCTACGCTCATCAGGAATAC‑AGGACTTCCGCCACCACAATAAGTAAAAAGTATGGAATCCGccccc                                                                                                          >  1:928777/1‑235 (MQ=255)
                                                                                                                                                            tgCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAG‑ACTATAGAATGCCTGATGCGCTACg                                                                                                                                                                       <  2:990966/151‑1 (MQ=255)
                                                                                                                                                            tgCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGGGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAG‑ACTATAGAATGCCTGATGCGCTACg                                                                                                                                                                       >  1:990966/1‑151 (MQ=255)
                                                                                                                                                                  atgtgctttttttCGACGCCAGTCCTAGGTGGTCCTTCGCCACCGGACAGGAGATAAATGTCACC‑GGCGGTCA‑GGGTATTTTCTGATCAACAGGTGAGATCCTTGAAGGATCTCCGTGAG‑ACTAGAGAATGCCTGATGCGCTACGCTCATCAGGCATAC‑GGGTCTTCCGCCACTACATTAAGGAAAAGTTATGGTAGCCGCACTCATCACCGTCGCCGTTATCGCCTGGTGTGCGCaa                                                                         <  2:569224/227‑1 (MQ=255)
                                                                                                                                                                   tatGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCg                                                                                                                                                                                                     <  1:185729/115‑1 (MQ=255)
                                                                                                                                                                             ttCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGGTCAACAGCGGGGATCCATTAAGGAACTCCGTGAG‑ACtata                                                                                                                                                                                          >  2:185729/1‑115 (MQ=255)
                                                                                                                                                                               ctcccgcAGTCCTAAGGGGTTGTACTGCACCGGCCAGTCGATCAATGCCCCC‑GGCGGTCA‑GGTGATTTTTTGATCAACGGCGGAGATCCATTAAGGATCTCCGTGAG‑ACTAAAGAATGCCTGATGCGCTACGCTCATCAGGCATAC‑AGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCCTGGTGTGCGCAACTGGCCTTAggcgg                                                           <  1:1151815/233‑1 (MQ=255)
                                                                                                                                                                                       gTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGGTCTGATCAACAGCGGAGATCCATTAAGG‑GCTCCGTGAG‑ACTATAGAATGCCTGATGCGCTACGCTCATCAGGCATAC‑AGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCCCTCATCACCGCCGCCGTTATTGCCTGGTGTGGGGAACAGGCCTTTGGCGGCGGGCAAAt                                                  >  1:618806/1‑239 (MQ=255)
                                                                                                                                                                                          cTAGGGCGTCTTTCCGCCCCGGACAGTCAATCAA‑GTCCCCGGGCGTGCG‑GGGTGTTTTCTGAACAACAGCGGAGCTTCATTAAGGATCCCCGTGAG‑ATTAAAGAATGCCTGATGCGCTACGCTAATCAGGCATAC‑AGGCCTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCCTGGTGTGCGCAACTGGCCTTAGGCGGCTGGCAAAttt                                                <  2:68946/239‑1 (MQ=255)
                                                                                                                                                                                                      tctcccccGGACACTACATTATTGTCCCC‑GGGGGTCA‑GTTGTTGTCTTGATCAACAGCGGCAATCCATGAAGTATCT‑CGGGAGCAATAAAGAATGCCTGATGCGCTACGCTAATGAGCCATAC‑AGTACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCCTGGTGTGCGCAACTGGCCTTAGGCGGCTGGCAAATTTCTCGTTTTAAcc                                    <  2:437505/233‑1 (MQ=255)
                                                                                                                                                                                                      aCTCCACCGGAAAGGTGAATAATGTCCCC‑GGCGGGCA‑GGTTTTGTTCTGACAAACGGGTGAGATCCATAAAGGATTGCCGTGAG‑ACTATAGAATGCCAGATGCGCTACGCTCAACAGGCATAC‑AGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCCTGGTGTGCGCAACTGGCCTTAGGCGGCTGGCAAATTTCTCGTTTTAAcc                                    <  1:1236999/239‑1 (MQ=255)
                                                                                                                                                                                                               gACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGAACTCCGGGAG‑ACTATAGAATTCCTGATGCGCTCCGCTCATCAAGCATAC‑AGGACTTCCGCCACTACATTAAGGGAAAGTTATGGTATCCGCACTCATCACCGTCCCCGTTTTCGCCCGCGGTGGTGAACTGGCCTTCGGCGGCTGGCACCTTTTTCCTTTTTACCGCGCCTTc                            >  2:750030/1‑238 (MQ=255)
                                                                                                                                                                                                                    tCGATCAATGTCACC‑GGCGGTCA‑GGTGGTGTTCTGCTCAAAAGCGGCGAACCATTAAGGGTCTCCGTGAG‑ACTATAGAATGCCCGATGCGCTACGCTCATCAGGCATAA‑AGGACTTTCGCCACTACATTTAGGAAAAGATTTGGGATCCGCACTCATCACCCTCCCCCTTTTCGCCTGGGGGTCGGAAATGGCCTTAGGCGGCTGGGAAAATTTTCGCTTTTACCGTGCTTTCgcaaca                      >  2:1292416/1‑234 (MQ=255)
                                                                                                                                                                                                                     cGATCAATGTCACC‑GGCGGTCA‑GGGGATGTCCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAG‑ACTATAGAATGCCTGATGCGCTACGCTCATCAGGCATAC‑AGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCCTGGTGTGCGCAACTGGCCTTAGGCGGCTGGCAAATTTCTCGTTTTAACCGTGCCTTCGaca                        <  1:1316848/236‑1 (MQ=255)
                                                                                                                                                                                                                                          cA‑GGTGATGTTCGGATCAACAGCGGAAATCCATTAAGGCTCCCCGTGGA‑CCTAAAGAATGCCGGATGCGCTACGCTCATCAGGAATAC‑AGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCCTGGTGTGCGCAACTGGCCTTAGGCGGCTGGCAAATTTCTCGTTTTAACCGTGCCTTCGACACACTATGCCAGCAAGGGCGGGt  <  1:1281804/238‑1 (MQ=255)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                           
CGGTGCATTCACTGATGCTCGGTAACCTGCTGAAATCGCCGATGTTCCAGTCACTGTTGCCACAATACGCGACCAAGCTGGGTATCAAACCGGATCAAGTCGAGCAGTATTACATCGACAAAGTACCGCTCAAACGCGGCTGCGATTATCAAGATGTGCTGAATATGCTGCTGTTCTACGCCAGTCCTAAGGCGTCGTACTGCACCGGACAGTCGATCAATGTCACC‑GGCGGTCA‑GGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAG‑ACTATAGAATGCCTGATGCGCTACGCTCATCAGGCATAC‑AGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCCTGGTGTGCGCAACTGGCCTTAGGCGGCTGGCAAATTTCTCGTTTTAACCGTGCCTTCGACACACTATGCCAGCAAGGGCGGGT  >  NC_000913/2828269‑2828739

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A