Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
79,855 |
A→G |
V337A (GTG→GCG) |
leuC ← |
3‑isopropylmalate isomerase (dehydratase) subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 79,855 | 0 | A | G | 99.7%
| 999.5
/ ‑6.0
| 324 | V337A (GTG→GCG) | leuC | 3‑isopropylmalate isomerase (dehydratase) subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (177/146); total (177/147) |
| Fisher's exact test for biased strand distribution p-value = 4.54e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.79e-01 |
Only 100 of 331 total aligned reads displayed.
ACTTTTCGCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCACTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGCC > NC_000913/79765‑79944
|
cTTTTCGCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCtt > 1:1074493/1‑93 (MQ=255)
cTTTTCGCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCtt < 1:7223151/93‑1 (MQ=255)
ttttCGCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTc < 2:2513013/93‑1 (MQ=255)
cGCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTc < 2:1417729/93‑1 (MQ=255)
gCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCa < 1:7420574/93‑1 (MQ=255)
gCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCa < 2:1123248/93‑1 (MQ=255)
ccTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACCAGAACTGCTAAACACTTTGTCGAAAGCCGCCTCGGTccga > 2:229719/1‑90 (MQ=255)
ccTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCCGc > 1:4547288/1‑93 (MQ=255)
ccTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGc > 1:4091476/1‑93 (MQ=255)
cTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCg > 2:4112260/1‑93 (MQ=255)
cTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCg > 2:4679388/1‑93 (MQ=255)
tttGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCgg > 2:4466513/1‑93 (MQ=255)
tGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGaa < 1:3244639/93‑1 (MQ=255)
ggCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAAt < 1:2054531/93‑1 (MQ=255)
gATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATAcc < 2:2937077/93‑1 (MQ=255)
aTCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATAccc > 1:2395248/1‑93 (MQ=255)
aTCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATAccc < 2:4755332/93‑1 (MQ=255)
aTCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATAccc > 1:5550432/1‑93 (MQ=255)
aTCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATAccc > 2:5720164/1‑93 (MQ=255)
tctcCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCg < 2:4191732/93‑1 (MQ=255)
tctcCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCg < 2:2067972/93‑1 (MQ=255)
tcCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGt > 2:55451/1‑93 (MQ=255)
gCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTc < 1:664632/93‑1 (MQ=255)
gCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTc < 1:7364883/93‑1 (MQ=255)
gCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTc > 2:3373912/1‑93 (MQ=255)
cTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCa > 2:1545100/1‑93 (MQ=255)
tGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCCGTTTCAg > 2:4347249/1‑93 (MQ=255)
ctccGAGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACGTGGTCGATAGCCGCTTCGGCCAGCGGAATACCCGGTTTCAg < 1:6341705/91‑1 (MQ=255)
gCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGc > 1:5862343/1‑93 (MQ=255)
gCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGc > 2:6436550/1‑93 (MQ=255)
cgTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCata < 2:2767192/93‑1 (MQ=255)
cgTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCata > 2:3514042/1‑93 (MQ=255)
cgTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCata < 1:1990232/93‑1 (MQ=255)
gTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCatat > 2:238312/1‑93 (MQ=255)
gTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCatat > 1:2825455/1‑93 (MQ=255)
tAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCAtata < 2:3118062/93‑1 (MQ=255)
tAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCAtata > 1:7882770/1‑93 (MQ=255)
tAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCAtata < 1:1352107/93‑1 (MQ=255)
tAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCAtata > 1:5916843/1‑93 (MQ=255)
aaTCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAgg > 1:6000629/1‑93 (MQ=255)
aaTCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAgg > 2:672972/1‑93 (MQ=255)
aaTCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAgc > 1:2173238/1‑92 (MQ=255)
aTCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGc < 2:3301340/93‑1 (MQ=255)
tCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGcc > 2:5898342/1‑93 (MQ=255)
cTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCa < 2:7536902/93‑1 (MQ=255)
ttCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAg < 1:2972071/93‑1 (MQ=255)
ttCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAg > 2:5471783/1‑93 (MQ=255)
tCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAgc > 1:385/1‑93 (MQ=255)
tCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAgc < 2:5177326/93‑1 (MQ=255)
cAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAgcg > 2:6570724/1‑93 (MQ=255)
aaTGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAgcgc > 2:1314802/1‑93 (MQ=255)
aTGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCt < 2:2458910/93‑1 (MQ=255)
gcgAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCttttt > 1:1794707/1‑93 (MQ=255)
gcgAGTTGGTACAGGAACCGATAAACACTGTGTCGATAGCCGCTTCGGTCAGCGGAATTCCCGGTTTCAGCCCCATATAGGCCAGCGCttttt < 1:396478/93‑1 (MQ=255)
cgAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTc < 2:696254/93‑1 (MQ=255)
cgAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTc < 1:3143365/93‑1 (MQ=255)
gAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCt < 2:2173909/93‑1 (MQ=255)
gAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCt > 2:5006490/1‑93 (MQ=255)
gAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCt < 1:6233629/93‑1 (MQ=255)
aGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTg > 2:6835616/1‑93 (MQ=255)
gTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGc < 2:6256390/93‑1 (MQ=255)
tGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCg < 2:5281028/93‑1 (MQ=255)
ggTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGa < 2:1203757/93‑1 (MQ=255)
gTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGAc > 2:7891116/1‑93 (MQ=255)
gTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGAc < 2:7153681/93‑1 (MQ=255)
aCAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGAcgc < 1:7059856/93‑1 (MQ=255)
cAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGAcgcg > 1:1579796/1‑93 (MQ=255)
cGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCaa > 2:7052737/1‑93 (MQ=255)
cGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCaa > 2:800465/1‑93 (MQ=255)
cGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGCTCaa > 2:6031356/1‑93 (MQ=255)
gATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAAc < 1:4466514/93‑1 (MQ=255)
gATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAAc < 2:1869078/93‑1 (MQ=255)
gATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGCTCAAc > 2:39119/1‑93 (MQ=255)
aTAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAAcc < 1:6396582/93‑1 (MQ=255)
aTAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAAcc > 2:6492109/1‑93 (MQ=255)
tAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCg > 1:2242162/1‑93 (MQ=255)
tAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCg > 2:5632425/1‑93 (MQ=255)
tAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCg > 1:5491217/1‑93 (MQ=255)
aaCACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGa > 2:710827/1‑93 (MQ=255)
cacTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGAtg > 1:4131665/1‑92 (MQ=255)
cacTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATc < 2:7202302/93‑1 (MQ=255)
cTTTGTCGATAGCCGCTTCGGTCTGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCgg < 2:4292673/93‑1 (MQ=255)
ttGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCa > 2:7828324/1‑93 (MQ=255)
ttGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCa > 2:7476363/1‑93 (MQ=255)
gTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCaaa < 1:6138679/93‑1 (MQ=255)
gTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCaaa < 1:334157/93‑1 (MQ=255)
gTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCaaa < 1:6055212/93‑1 (MQ=255)
gTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCaaa < 1:5033185/93‑1 (MQ=255)
tCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAAc < 2:4546904/93‑1 (MQ=255)
cGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACg < 2:7407410/93‑1 (MQ=255)
gATAGCCGCTTCGGTCAGCGGTATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGa < 1:3909079/93‑1 (MQ=255)
gATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGa < 2:1661999/93‑1 (MQ=255)
gATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGa > 1:5366488/1‑93 (MQ=255)
gATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGa > 1:437051/1‑93 (MQ=255)
tAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAg > 1:5154286/1‑93 (MQ=255)
aGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGc < 1:4740733/93‑1 (MQ=255)
gCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGcc > 1:584760/1‑93 (MQ=255)
gCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGcc > 1:7631866/1‑93 (MQ=255)
gCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGcc > 1:2649248/1‑93 (MQ=255)
gCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGcc > 1:6936824/1‑93 (MQ=255)
|
ACTTTTCGCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCACTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGCC > NC_000913/79765‑79944
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGACTTTTCGCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCACTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGCCGGAT > NC_000913/79763‑79948
|
CGACTTTTCGCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGC > SRR4302543.2285983/1‑94 (MQ=60)
CGACTTTTCGCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGC > SRR4302543.5123511/1‑94 (MQ=60)
CGACTTTTCGCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGAGCGAGATGGTACAGGAACCGATAAACACTTTGTCGATAGCCGC > SRR4302543.3435819/1‑94 (MQ=60)
GACTTTTCGCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCT < SRR4302543.7687575/94‑1 (MQ=60)
GACTTTTCGCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCT > SRR4302543.525344/1‑94 (MQ=60)
ACTTTTCGCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTT > SRR4302543.1084150/1‑94 (MQ=60)
CTTTTCGCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTC < SRR4302543.7293152/94‑1 (MQ=60)
CTTTTCGCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTC > SRR4302543.4376088/1‑94 (MQ=60)
TTTTCGCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCG < SRR4302543.4151510/94‑1 (MQ=60)
TTTTCGCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCG > SRR4302543.6236291/1‑94 (MQ=60)
TTTTCGCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCG < SRR4302543.2358976/94‑1 (MQ=60)
TTCGCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGT > SRR4302543.591237/1‑94 (MQ=60)
TTCGCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGT > SRR4302543.591458/1‑94 (MQ=60)
GCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAG < SRR4302543.7491751/94‑1 (MQ=60)
CCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCCGC > SRR4302543.4588703/1‑94 (MQ=60)
CCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGC > SRR4302543.4128175/1‑94 (MQ=60)
CCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCG < SRR4302543.1724806/94‑1 (MQ=60)
CCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGCACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCG > SRR4302543.1552941/1‑94 (MQ=60)
ACTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCG > SRR4302543.5539204/1‑94 (MQ=60)
CTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGG > SRR4302543.5569764/1‑94 (MQ=60)
TTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAA > SRR4302543.3951665/1‑94 (MQ=60)
TGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAAT < SRR4302543.3273981/94‑1 (MQ=60)
TGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAAT < SRR4302543.2958982/94‑1 (MQ=60)
GGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATA < SRR4302543.2072923/94‑1 (MQ=60)
GCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATAC < SRR4302543.2623906/94‑1 (MQ=60)
CGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACC > SRR4302543.3957515/1‑94 (MQ=60)
CGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGGTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACC > SRR4302543.6070008/1‑94 (MQ=60)
GATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCC > SRR4302543.2416916/1‑94 (MQ=60)
GATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCC > SRR4302543.5600908/1‑94 (MQ=60)
GATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCC > SRR4302543.3384640/1‑94 (MQ=60)
GTCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATTCCCG < SRR4302543.7894118/94‑1 (MQ=60)
TCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGG < SRR4302543.5903976/94‑1 (MQ=60)
CTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGT > SRR4302543.5959975/1‑94 (MQ=60)
CTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGT > SRR4302543.7422992/1‑94 (MQ=60)
CGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTC > SRR4302543.6356730/1‑94 (MQ=60)
CGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTC > SRR4302543.1895524/1‑94 (MQ=60)
CGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTC > SRR4302543.6643711/1‑94 (MQ=60)
GCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCA > SRR4302543.3809975/1‑94 (MQ=60)
GCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCA < SRR4302543.670745/94‑1 (MQ=60)
GCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCA < SRR4302543.7435701/94‑1 (MQ=60)
ctccgaGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACGTGGTCGATAGCCGCTTCGGCCAGCGGAATACCCGGTTTCAGC < SRR4302543.6401337/88‑1 (MQ=60)
TGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCTGTTTCAGC > SRR4302543.2087990/1‑94 (MQ=60)
TGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGC < SRR4302543.6401340/94‑1 (MQ=60)
TGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGC < SRR4302543.2016048/94‑1 (MQ=60)
TGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGC > SRR4302543.2096220/1‑94 (MQ=60)
TGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGC > SRR4302543.5915701/1‑94 (MQ=60)
TGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGC < SRR4302543.2016049/94‑1 (MQ=60)
GCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCC > SRR4302543.7421032/1‑94 (MQ=60)
CCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCC < SRR4302543.6164304/94‑1 (MQ=60)
GCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGTATACCCGGTTTCAGCCCCA < SRR4302543.6079403/94‑1 (MQ=60)
CGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCAT < SRR4302543.3251036/94‑1 (MQ=60)
CGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCAT > SRR4302543.5178942/1‑94 (MQ=60)
ccgaaagCTTCAATGCGCGAGTGGGTACAGTAACCGAGAAACACGTTCTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATAT < SRR4302543.4753570/87‑1 (MQ=60)
CGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATAT < SRR4302543.7789690/94‑1 (MQ=60)
CGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATAT > SRR4302543.2595871/1‑94 (MQ=60)
CGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATAT < SRR4302543.2247749/94‑1 (MQ=60)
CGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATAT < SRR4302543.4753571/94‑1 (MQ=60)
CGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATAT > SRR4302543.561909/1‑94 (MQ=60)
CGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATAT > SRR4302543.2851303/1‑94 (MQ=60)
CGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATAT < SRR4302543.2008070/94‑1 (MQ=60)
GTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATA > SRR4302543.5970887/1‑94 (MQ=60)
GTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATA > SRR4302543.7956943/1‑94 (MQ=60)
GTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATA < SRR4302543.316233/94‑1 (MQ=60)
TAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAG < SRR4302543.4157682/94‑1 (MQ=60)
TAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAG < SRR4302543.7470708/94‑1 (MQ=60)
TAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAG > SRR4302543.3255891/1‑94 (MQ=60)
TAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAG < SRR4302543.6418611/94‑1 (MQ=60)
TAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAG < SRR4302543.1364201/94‑1 (MQ=60)
GAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATGCCCGGTTTCAGCCCCATATAG < SRR4302543.2408670/94‑1 (MQ=60)
AAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGG < SRR4302543.6610774/94‑1 (MQ=60)
AAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGG > SRR4302543.6055761/1‑94 (MQ=60)
AAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGC > SRR4302543.2192707/1‑94 (MQ=60)
AAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGC > SRR4302543.1916054/1‑94 (MQ=60)
CTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAG > SRR4302543.5078761/1‑94 (MQ=60)
TTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGC < SRR4302543.2999058/94‑1 (MQ=60)
TTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGC > SRR4302543.395/1‑94 (MQ=60)
ATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTT > SRR4302543.2683403/1‑94 (MQ=60)
ATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTT > SRR4302543.3893407/1‑94 (MQ=60)
ATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTT < SRR4302543.4612383/94‑1 (MQ=60)
ATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTT > SRR4302543.456519/1‑94 (MQ=60)
TGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCACTCCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTT < SRR4302543.3193925/94‑1 (MQ=60)
GCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTT < SRR4302543.554726/94‑1 (MQ=60)
CGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTT < SRR4302543.1904642/94‑1 (MQ=60)
CGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTT > SRR4302543.2709141/1‑94 (MQ=60)
CGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTT > SRR4302543.1810770/1‑94 (MQ=60)
GCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTC > SRR4302543.6788542/1‑94 (MQ=60)
GCGAGTTGGTACAGGAACCGATAAACACTGTGTCGATAGCCGCTTCGGTCAGCGGAATTCCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTC < SRR4302543.400141/94‑1 (MQ=60)
CGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCT < SRR4302543.7665082/94‑1 (MQ=60)
CGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCT < SRR4302543.2235174/94‑1 (MQ=60)
CGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCT < SRR4302543.3171638/94‑1 (MQ=60)
GAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTG < SRR4302543.6292459/94‑1 (MQ=60)
AGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGC > SRR4302543.703242/1‑94 (MQ=60)
TGGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGA > SRR4302543.6755213/1‑94 (MQ=60)
TGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGAC < SRR4302543.5976714/94‑1 (MQ=60)
GGTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGAC > SRR4302543.2738257/1‑94 (MQ=60)
GTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACG > SRR4302543.2345465/1‑94 (MQ=60)
GTACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACG > SRR4302543.6371004/1‑94 (MQ=60)
ACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCG < SRR4302543.6969150/94‑1 (MQ=60)
ACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCG > SRR4302543.1593897/1‑94 (MQ=60)
ACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCG < SRR4302543.916599/94‑1 (MQ=60)
ACAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCG < SRR4302543.7128374/94‑1 (MQ=60)
CAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGC < SRR4302543.5938831/94‑1 (MQ=60)
CAGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGC > SRR4302543.5123092/1‑94 (MQ=60)
AGGAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCG > SRR4302543.4500731/1‑94 (MQ=60)
GAACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTT < SRR4302543.5493511/94‑1 (MQ=60)
ACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCA > SRR4302543.1207829/1‑94 (MQ=60)
ACCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGCTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCA > SRR4302543.5397823/1‑94 (MQ=60)
CCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAA > SRR4302543.7283324/1‑94 (MQ=60)
CCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAA < SRR4302543.2226606/94‑1 (MQ=60)
CCGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAA < SRR4302543.3130850/94‑1 (MQ=60)
CGATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAAC < SRR4302543.4459292/94‑1 (MQ=60)
GATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACC > SRR4302543.6322767/1‑94 (MQ=60)
GATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACC < SRR4302543.7033486/94‑1 (MQ=60)
GATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACC > SRR4302543.1521594/1‑94 (MQ=60)
GATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACC < SRR4302543.4506999/94‑1 (MQ=60)
CATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACC < SRR4302543.3277573/94‑1 (MQ=60)
ATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCG > SRR4302543.5541017/1‑94 (MQ=60)
ATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCG > SRR4302543.2262495/1‑94 (MQ=60)
ATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCG < SRR4302543.6456800/94‑1 (MQ=60)
ATAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTATCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCG > SRR4302543.7309124/1‑94 (MQ=60)
TAAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGG < SRR4302543.7582926/94‑1 (MQ=60)
AAACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGA > SRR4302543.5649655/1‑94 (MQ=60)
ACCACTTTGTCGATAGCCGCGTCGGTCAGCGGAATCCCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGAT < SRR4302543.6007244/94‑1 (MQ=60)
ACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCTCTTTTTCTGCCGACGCGCGTTCAACCGGATC < SRR4302543.7147856/94‑1 (MQ=60)
ACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATG > SRR4302543.4168931/1‑94 (MQ=60)
ACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATC < SRR4302543.1342005/94‑1 (MQ=60)
ACACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATC > SRR4302543.4033184/1‑94 (MQ=60)
CACTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCG > SRR4302543.6250014/1‑94 (MQ=60)
CCTTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGG < SRR4302543.294512/94‑1 (MQ=60)
TTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCA > SRR4302543.3925741/1‑94 (MQ=60)
TTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCA < SRR4302543.4185148/94‑1 (MQ=60)
TTTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCA > SRR4302543.6059872/1‑94 (MQ=60)
TTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAA > SRR4302543.4567122/1‑94 (MQ=60)
TTGTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAA < SRR4302543.3315486/94‑1 (MQ=60)
GTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAAC < SRR4302543.337223/94‑1 (MQ=60)
GTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAAC < SRR4302543.6196827/94‑1 (MQ=60)
GTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAAC < SRR4302543.5078970/94‑1 (MQ=60)
GTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAAC < SRR4302543.6112534/94‑1 (MQ=60)
GTCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAAC < SRR4302543.480944/94‑1 (MQ=60)
TCGATAGCCGCTTCGGTCAGCGTAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACG < SRR4302543.17089/94‑1 (MQ=60)
TCGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACG < SRR4302543.6147638/94‑1 (MQ=60)
CGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGA > SRR4302543.4101164/1‑94 (MQ=60)
CGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGA > SRR4302543.5415070/1‑94 (MQ=60)
CGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGA > SRR4302543.5403364/1‑94 (MQ=60)
CGATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGA > SRR4302543.441145/1‑94 (MQ=60)
GATAGCCGCTTCGGTCAGCGGTATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAA < SRR4302543.3943591/94‑1 (MQ=60)
ATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAG > SRR4302543.7436301/1‑94 (MQ=60)
ATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAG < SRR4302543.949437/94‑1 (MQ=60)
ATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAG > SRR4302543.1750760/1‑94 (MQ=60)
ATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAG > SRR4302543.5200862/1‑94 (MQ=60)
ATAGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAG > SRR4302543.424012/1‑94 (MQ=60)
AGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGCC > SRR4302543.7002078/1‑94 (MQ=60)
AGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGCC > SRR4302543.590101/1‑94 (MQ=60)
AGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGCC > SRR4302543.2673265/1‑94 (MQ=60)
AGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGCC < SRR4302543.4784049/94‑1 (MQ=60)
AGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGCC < SRR4302543.3955243/94‑1 (MQ=60)
AGCCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGCC > SRR4302543.7704281/1‑94 (MQ=60)
CCGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGCCGG > SRR4302543.6983592/1‑94 (MQ=60)
CGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGCCGGA > SRR4302543.4380105/1‑94 (MQ=60)
CGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGCCGGA > SRR4302543.4698811/1‑94 (MQ=60)
CGCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGCCGGA > SRR4302543.2927146/1‑94 (MQ=60)
GCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTGAACCGGATCGGCAAACGAAGCCGGAT < SRR4302543.4547430/94‑1 (MQ=60)
GCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGCCGGAT < SRR4302543.4720261/94‑1 (MQ=60)
GCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGCCGGAT < SRR4302543.5677735/94‑1 (MQ=60)
GCTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGCCGGAT > SRR4302543.6970288/1‑94 (MQ=60)
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CGACTTTTCGCCCTTTGGCGATCTCCGCTGCCGCGCGTAAATCTTCAATGCGCGAGTTGGTACAGGAACCGATAAACACTTTGTCGATAGCCACTTCGGTCAGCGGAATACCCGGTTTCAGCCCCATATAGGCCAGCGCTTTTTCTGCCGACGCGCGTTCAACCGGATCGGCAAACGAAGCCGGAT > NC_000913/79763‑79948
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
