Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,353,950	A→G	T562A (ACC→GCC)	gltB →	glutamate synthase large subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,353,950	0	A	G	99.7%	894.3 / ‑5.2	286	T562A (ACC→GCC)	gltB	glutamate synthase large subunit
Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (148/137); total (148/138)
Fisher's exact test for biased strand distribution p-value = 4.83e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.00e-01

Only 100 of 316 total aligned reads displayed.

ATTATTTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCACCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCTGCTCTACTCC  >  NC_000913/3353860‑3354039

attattTACGCCTACTCCCGCCGGCATTTTGCCCAGTGGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCgccgcc                                                                                         <  1:6381120/93‑1 (MQ=255)

attattTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCgccgcc                                                                                         >  2:5002858/1‑93 (MQ=255)

attattTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCgccgcc                                                                                         >  2:2392079/1‑93 (MQ=255)

 ttattTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGccgcca                                                                                        >  1:5061852/1‑93 (MQ=255)

 ttattTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGccgcca                                                                                        >  2:5324023/1‑93 (MQ=255)

  tattTCCGACTACTCCCGCCAGCAGTTGGCCCAGGTGACTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAg                                                                                       <  2:5174162/93‑1 (MQ=255)

  tattTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAg                                                                                       >  2:2982270/1‑93 (MQ=255)

  tattTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAg                                                                                       <  2:233724/93‑1 (MQ=255)

    tttACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTa                                                                                     <  1:4171828/93‑1 (MQ=255)

     ttACGCCTCCTCCCGCCAGCATTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTAt                                                                                    <  2:7723404/93‑1 (MQ=255)

     ttACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTAt                                                                                    >  2:6774098/1‑93 (MQ=255)

     ttACGACTACTCCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTAt                                                                                    <  2:3530532/93‑1 (MQ=255)

      tACGCCTCCTCCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATc                                                                                   <  2:5749695/93‑1 (MQ=255)

           ctgctTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCg                                                                              <  1:2881963/90‑1 (MQ=255)

           ctactTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCg                                                                              >  1:2535104/1‑93 (MQ=255)

              ctcccGCAAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGa                                                                           <  1:3223576/90‑1 (MQ=255)

               ttCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGaa                                                                          >  1:5709522/1‑93 (MQ=255)

                tCCGCTAGCAGTTGCCCAAGGTCACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGaaa                                                                         <  1:4769484/93‑1 (MQ=255)

                tCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGaaa                                                                         <  1:3400300/93‑1 (MQ=255)

                  cGCCAGCAGTTTGCCCAGGTGCCTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATg                                                                       <  2:2798688/93‑1 (MQ=255)

                   gCCAGCAGTTTGGCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGa                                                                      >  1:2787601/1‑93 (MQ=255)

                   gCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGa                                                                      >  1:1946319/1‑93 (MQ=255)

                    ccAGCAGTTTGCCCGGGGGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCACCAGTATCGGTCGTGAAATGaa                                                                     <  1:977926/93‑1 (MQ=255)

                    ccAGCAGTTTGCCCAGGTGACTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGaa                                                                     <  1:208924/93‑1 (MQ=255)

                    ccAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGaa                                                                     >  2:4578446/1‑93 (MQ=255)

                    ccAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGaa                                                                     >  1:438886/1‑93 (MQ=255)

                       gcagTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAGTGAACgc                                                                  >  1:1088332/1‑92 (MQ=255)

                       gcagTTTGCCAAGGTGACTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGt                                                                  <  1:3982008/93‑1 (MQ=255)

                        gagTTCGCCCGCGCGACTGACCCGCCAATCGACCCGCTGCGTGAAGCACATGTTATGTCGCTCCCCTCCAGTATCGGTCGTGAAATGAACGTc                                                                 <  2:221297/92‑1 (MQ=255)

                        cagTTTTCTCAGGTGACAAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTc                                                                 <  2:4141145/93‑1 (MQ=255)

                          gTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCtt                                                               >  1:4080414/1‑93 (MQ=255)

                          gTTTCCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCtt                                                               <  1:4961657/93‑1 (MQ=255)

                           tttGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCttt                                                              <  2:7774800/93‑1 (MQ=255)

                           tttGCCCAGGTGACCAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCttt                                                              <  1:2596922/93‑1 (MQ=255)

                            ttGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCtttt                                                             >  1:683698/1‑93 (MQ=255)

                              gCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGc                                                           >  1:5588651/1‑93 (MQ=255)

                                ccAGTTGCCTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGa                                                         <  1:3168849/93‑1 (MQ=255)

                                ccAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGa                                                         <  2:4894759/93‑1 (MQ=255)

                                  aGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCAGCCAGTATCGGTCGTGAAATGCACGTCTTTTGCGCAg                                                       >  1:5254209/1‑93 (MQ=255)

                                   ggTCACTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGc                                                      <  2:1177970/93‑1 (MQ=255)

                                    gTGACCACCCCGCCAATCGCCCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCa                                                     <  1:1517994/93‑1 (MQ=255)

                                     tGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCag                                                    >  2:4078966/1‑93 (MQ=255)

                                      gccTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCaga                                                   <  2:6292315/91‑1 (MQ=255)

                                      gACTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCaga                                                   <  1:6919688/93‑1 (MQ=255)

                                      gACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCaga                                                   <  1:187572/93‑1 (MQ=255)

                                        cTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAgg                                                 <  1:4147994/93‑1 (MQ=255)

                                        cTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAgg                                                 >  1:373613/1‑93 (MQ=255)

                                         tAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAggg                                                >  2:1796665/1‑93 (MQ=255)

                                          accccGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGc                                               <  1:539728/91‑1 (MQ=255)

                                          aaCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGc                                               <  2:2588483/93‑1 (MQ=255)

                                            cccGCCAATCGGCCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCa                                             <  1:2322590/93‑1 (MQ=255)

                                            cccGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCa                                             <  2:6967949/93‑1 (MQ=255)

                                             ccGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAg                                            >  1:7317299/1‑93 (MQ=255)

                                             ccGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAg                                            >  2:1317796/1‑93 (MQ=255)

                                             ccGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAg                                            >  1:2845248/1‑93 (MQ=255)

                                                   aTCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCAc                                      <  1:4665919/93‑1 (MQ=255)

                                                   aTCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGCCGTGAAATTTACGTCTTTTGCGAAGCAGAGGGGCACGCGCAc                                      >  2:3663206/1‑93 (MQ=255)

                                                    tCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCAcc                                     >  1:6564286/1‑93 (MQ=255)

                                                    tCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCAcc                                     >  2:3941180/1‑93 (MQ=255)

                                                    tCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCAcc                                     <  1:3926956/93‑1 (MQ=255)

                                                      gACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGt                                   >  2:6601841/1‑93 (MQ=255)

                                                       aCCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGtt                                  >  1:852323/1‑93 (MQ=255)

                                                       aCCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGtt                                  >  2:5895987/1‑93 (MQ=255)

                                                       aCCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGtt                                  >  1:7721583/1‑93 (MQ=255)

                                                         ccGCTGCGTGAAGCGCATGTTATGTCGCTCGGCGCCAGGATCGGTCGTGGAATGAAGGGCTTTTGCGAAGCAGAGGGCCAGGCGCACCGATTa                                >  2:1626081/1‑93 (MQ=255)

                                                         ccGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTa                                <  1:7184211/93‑1 (MQ=255)

                                                          cGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTaa                               >  1:7409393/1‑93 (MQ=255)

                                                          cGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAAGGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTaa                               <  2:6444796/93‑1 (MQ=255)

                                                            cggCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTATGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGc                             >  1:7022232/3‑93 (MQ=255)

                                                             tGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCt                            >  2:7882633/1‑93 (MQ=255)

                                                                gTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTa                         <  2:3057729/93‑1 (MQ=255)

                                                                gTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTa                         >  2:2501744/1‑93 (MQ=255)

                                                                  gAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTaaa                       <  1:6007583/93‑1 (MQ=255)

                                                                  gAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTaaa                       >  2:2610928/1‑93 (MQ=255)

                                                                  gAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTGAAGCTTTaat                       >  2:1546219/1‑92 (MQ=255)

                                                                   aaGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAAt                      >  2:7403306/1‑93 (MQ=255)

                                                                   aaGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAAt                      >  2:2677869/1‑93 (MQ=255)

                                                                   aaGCGCATGTTATGTCCCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAAt                      <  1:4271482/93‑1 (MQ=255)

                                                                    aGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATc                     >  2:3717580/1‑93 (MQ=255)

                                                                    aGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATc                     <  1:6160883/93‑1 (MQ=255)

                                                                    aGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATc                     <  1:2009689/93‑1 (MQ=255)

                                                                    aGCGCATGTTAGGGCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATc                     <  1:2678494/93‑1 (MQ=255)

                                                                      cgcATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGc                   >  2:326194/1‑93 (MQ=255)

                                                                       gcATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGcc                  <  1:3073064/93‑1 (MQ=255)

                                                                       ccATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGcc                  <  1:5870730/92‑1 (MQ=255)

                                                                        cATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCg                 <  2:4253316/93‑1 (MQ=255)

                                                                        cATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCg                 >  1:6311344/1‑93 (MQ=255)

                                                                         aTGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGa                <  1:5165362/93‑1 (MQ=255)

                                                                         aTGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGa                <  1:3628476/93‑1 (MQ=255)

                                                                          tGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGAt               >  1:7684871/1‑93 (MQ=255)

                                                                          tGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGAt               >  1:454083/1‑93 (MQ=255)

                                                                            ttATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTc             <  2:7065253/93‑1 (MQ=255)

                                                                             tATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCt            <  2:3422450/93‑1 (MQ=255)

                                                                              aTGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCTg           >  2:7236765/1‑93 (MQ=255)

                                                                                 tcgctcgcCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCTATTCTGctc        >  2:4741057/1‑93 (MQ=255)

                                                                                 tcgctcgcCGCCAGTAGCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCTGctc        <  1:1250424/93‑1 (MQ=255)

                                                                                    ctcgcCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCTGCTCTAc     <  2:652570/93‑1 (MQ=255)

                                                                                    ctcgcCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCTGCTCTAc     <  1:7062740/93‑1 (MQ=255)

                                                                                      cgccgcCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCTGCTCTACTc   <  2:522234/93‑1 (MQ=255)

                                                                                      cgccgcCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCTGCTCTACTc   <  2:3871745/93‑1 (MQ=255)

ATTATTTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCACCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCTGCTCTACTCC  >  NC_000913/3353860‑3354039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCATTATTTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCACCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCTGCTCTACTCCGATT  >  NC_000913/3353857‑3354043

CGCATTATTTACGACTACTCCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCG                                                                                               <  SRR4302543.1258055/94‑1 (MQ=60)

CCCATTCTTTACGACTCCTCCCGCCAGCATTTTGCCCAGGTGACTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCG                                                                                               <  SRR4302543.4226145/94‑1 (MQ=60)

 GCATTATTTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACTCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGC                                                                                              >  SRR4302543.7316879/1‑94 (MQ=60)

 GCATTATTTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGC                                                                                              >  SRR4302543.5025766/1‑94 (MQ=60)

  CATTTTTTACGACTCCTACCCCCAGCAGTTTGCCCAGGTGACTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCC                                                                                             <  SRR4302543.2486516/94‑1 (MQ=60)

  CATTATTTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCC                                                                                             <  SRR4302543.7963748/94‑1 (MQ=60)

  CATTATTTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCC                                                                                             >  SRR4302543.1741312/1‑94 (MQ=60)

   ATTATTTACGCCTACTCCCGCCGGCATTTTGCCCAGTGGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCA                                                                                            <  SRR4302543.6441166/94‑1 (MQ=60)

   ATTATTTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCA                                                                                            >  SRR4302543.5107834/1‑94 (MQ=60)

   ATTATTTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCA                                                                                            >  SRR4302543.6760287/1‑94 (MQ=60)

    TTATTTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAG                                                                                           >  SRR4302543.2857160/1‑94 (MQ=60)

     TATTTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGT                                                                                          >  SRR4302543.5464618/1‑94 (MQ=60)

       TTTACGACTCCTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTAT                                                                                        <  SRR4302543.5881409/94‑1 (MQ=60)

       TTTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTAT                                                                                        <  SRR4302543.4209607/94‑1 (MQ=60)

        TTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATC                                                                                       >  SRR4302543.4762685/1‑94 (MQ=60)

         TACGACTCCCCCCGCCAGCAGTTTGCCCAGGTAACAAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCG                                                                                      <  SRR4302543.7463922/94‑1 (MQ=60)

          ACGACTACTCCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGG                                                                                     <  SRR4302543.878076/94‑1 (MQ=60)

          ACGACTACTCCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGG                                                                                     <  SRR4302543.5161331/94‑1 (MQ=60)

           CGACTACTTCCGCCAGCAGTTTGCCCGGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGT                                                                                    <  SRR4302543.6507979/94‑1 (MQ=60)

           CGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGT                                                                                    >  SRR4302543.4698887/1‑94 (MQ=60)

           CGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGT                                                                                    >  SRR4302543.2686128/1‑94 (MQ=60)

           CGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGT                                                                                    >  SRR4302543.6911278/1‑94 (MQ=60)

            tactctttccgccagaagtttccccagtggctTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTC                                                                                   <  SRR4302543.6556548/62‑1 (MQ=60)

            GACTTCTTCCGCCAGCAGTTTGCCCAGGTGACTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTC                                                                                   <  SRR4302543.6964461/94‑1 (MQ=60)

            CACTACTTCCGCCAGCAGTTTGCCCAGGTGACTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTC                                                                                   <  SRR4302543.2326975/94‑1 (MQ=60)

             ACTACTTCCGCCAGCAGTTTGCCCAGGTGACTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCG                                                                                  <  SRR4302543.7347456/94‑1 (MQ=60)

             ACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCG                                                                                  >  SRR4302543.2558196/1‑94 (MQ=60)

              CTGCTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGT                                                                                 <  SRR4302543.2908192/94‑1 (MQ=60)

              CTACTCCCGCCAGCAGTTTGCCCAGGTGACTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGT                                                                                 <  SRR4302543.5193460/94‑1 (MQ=60)

                ACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGA                                                                               >  SRR4302543.5598268/1‑94 (MQ=60)

                ACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGA                                                                               >  SRR4302543.3983081/1‑94 (MQ=60)

                ACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGA                                                                               >  SRR4302543.6871122/1‑94 (MQ=60)

                ACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGA                                                                               >  SRR4302543.1919939/1‑94 (MQ=60)

                 CTTCCGCCAGCAGTTTGCCCAGGTGACTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAA                                                                              <  SRR4302543.4046305/94‑1 (MQ=60)

                 CTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAA                                                                              >  SRR4302543.5761611/1‑94 (MQ=60)

                 CTCCCGCCAGCAGTTTGCCCAGGTGACTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAA                                                                              <  SRR4302543.7491512/94‑1 (MQ=60)

                 CTCCCGCAAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAA                                                                              <  SRR4302543.3252710/94‑1 (MQ=60)

                   TCCGCTAGCAGTTGCCCAAGGTCACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAAT                                                                            <  SRR4302543.4813076/94‑1 (MQ=60)

                   TCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAAT                                                                            <  SRR4302543.3430764/94‑1 (MQ=60)

                    CCGCCAGCAGTTTGCCCGGGTGACTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATG                                                                           <  SRR4302543.4257317/94‑1 (MQ=60)

                     CGCCAGCAGTTTGGCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGA                                                                          >  SRR4302543.2813040/1‑94 (MQ=60)

                     CGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGA                                                                          >  SRR4302543.4326199/1‑94 (MQ=60)

                     CGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGA                                                                          >  SRR4302543.1963793/1‑94 (MQ=60)

                      GCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAA                                                                         >  SRR4302543.5060836/1‑94 (MQ=60)

                      GCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAA                                                                         >  SRR4302543.442998/1‑94 (MQ=60)

                       CCAGCAGTTTGCCCGGGGGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCACCAGTATCGGTCGTGAAATGAAC                                                                        <  SRR4302543.986560/94‑1 (MQ=60)

                       CCAGCAGTTTGCCCAGGTGACTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAAC                                                                        <  SRR4302543.210702/94‑1 (MQ=60)

                       CCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAAC                                                                        >  SRR4302543.4297566/1‑94 (MQ=60)

                        CAGCAGTTTGCTCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACG                                                                       >  SRR4302543.5214886/1‑94 (MQ=60)

                        CAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACG                                                                       >  SRR4302543.4897841/1‑94 (MQ=60)

                        CAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACG                                                                       >  SRR4302543.4739399/1‑94 (MQ=60)

                         AGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAGTGAACGC                                                                      >  SRR4302543.1098108/1‑94 (MQ=60)

                         AGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGT                                                                      >  SRR4302543.3509085/1‑94 (MQ=60)

                          GCAGTTTGCCAAGGTGACTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTC                                                                     <  SRR4302543.4017327/94‑1 (MQ=60)

                           CAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCT                                                                    >  SRR4302543.1925516/1‑94 (MQ=60)

                            ATTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTT                                                                   <  SRR4302543.2895211/94‑1 (MQ=60)

                            AGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTT                                                                   >  SRR4302543.2910241/1‑94 (MQ=60)

                            AGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTT                                                                   >  SRR4302543.4116989/1‑94 (MQ=60)

                            AGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTT                                                                   >  SRR4302543.4202002/1‑94 (MQ=60)

                             GTTTGCCCGGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTT                                                                  <  SRR4302543.3562049/94‑1 (MQ=60)

                             GTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTT                                                                  >  SRR4302543.4148527/1‑94 (MQ=60)

                             GTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTT                                                                  >  SRR4302543.5299992/1‑94 (MQ=60)

                             GTTTCCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTT                                                                  <  SRR4302543.5006822/94‑1 (MQ=60)

                              gtgtcccggggggctcaccccccaaatcccccagcgccTGAAGCGCATTTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTT                                                                 <  SRR4302543.1796315/56‑1 (MQ=60)

                              TTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTT                                                                 >  SRR4302543.690004/1‑94 (MQ=60)

                              TTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTT                                                                 >  SRR4302543.709782/1‑94 (MQ=60)

                              TTTGCCCAGGTGACCAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTT                                                                 <  SRR4302543.2620513/94‑1 (MQ=60)

                               TTCCCCGGGTGACTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTG                                                                <  SRR4302543.2870436/94‑1 (MQ=60)

                                tcccaaggtacCTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGC                                                               <  SRR4302543.4972303/83‑1 (MQ=60)

                                TGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGC                                                               <  SRR4302543.1294907/94‑1 (MQ=60)

                                TGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGC                                                               >  SRR4302543.5639564/1‑94 (MQ=60)

                                TGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGC                                                               >  SRR4302543.7054273/1‑94 (MQ=60)

                                   cggcggcACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAA                                                            <  SRR4302543.360232/87‑1 (MQ=60)

                                   CCAGTTGCCTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAA                                                            <  SRR4302543.3197382/94‑1 (MQ=60)

                                    CAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAG                                                           >  SRR4302543.2876741/1‑94 (MQ=60)

                                    CAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCAGCCAGTATCGGTCGTGAAATGCACGTCTTTTGCGCAG                                                           >  SRR4302543.5301594/1‑94 (MQ=60)

                                    CAGGTAACTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAG                                                           <  SRR4302543.2873199/94‑1 (MQ=60)

                                    CAGATCACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATCTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAG                                                           <  SRR4302543.5998814/94‑1 (MQ=60)

                                     agcggcatcACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGC                                                          <  SRR4302543.3433112/85‑1 (MQ=60)

                                     AGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGC                                                          >  SRR4302543.1177205/1‑94 (MQ=60)

                                      gggtACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCA                                                         <  SRR4302543.2004940/90‑1 (MQ=60)

                                      GGTGACTCACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCA                                                         <  SRR4302543.3730731/94‑1 (MQ=60)

                                      GGTGACTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCA                                                         <  SRR4302543.713103/94‑1 (MQ=60)

                                      GGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCA                                                         >  SRR4302543.1404948/1‑94 (MQ=60)

                                      GGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCA                                                         <  SRR4302543.5720922/94‑1 (MQ=60)

                                       GTGACCACCCCGCCAATCGCCCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAG                                                        <  SRR4302543.1531627/94‑1 (MQ=60)

                                         atatacCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAG                                                      <  SRR4302543.6622936/88‑1 (MQ=60)

                                         GACTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAG                                                      <  SRR4302543.5903013/94‑1 (MQ=60)

                                         GACTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAG                                                      <  SRR4302543.6984749/94‑1 (MQ=60)

                                         GACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAG                                                      >  SRR4302543.5109682/1‑94 (MQ=60)

                                         GACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAG                                                      <  SRR4302543.5370439/94‑1 (MQ=60)

                                         GACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAG                                                      <  SRR4302543.189165/94‑1 (MQ=60)

                                         GACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAG                                                      <  SRR4302543.6435759/94‑1 (MQ=60)

                                          ACTACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGG                                                     <  SRR4302543.988526/94‑1 (MQ=60)

                                          ACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGG                                                     >  SRR4302543.377052/1‑94 (MQ=60)

                                          ACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAAG                                                     >  SRR4302543.377051/1‑94 (MQ=60)

                                           CTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGG                                                    >  SRR4302543.1240298/1‑94 (MQ=60)

                                           CTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGG                                                    >  SRR4302543.3661652/1‑94 (MQ=60)

                                           CTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGG                                                    <  SRR4302543.4185491/94‑1 (MQ=60)

                                            TAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGC                                                   >  SRR4302543.845898/1‑94 (MQ=60)

                                             ACCCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCC                                                  <  SRR4302543.544725/94‑1 (MQ=60)

                                              CCCCGCCAATCGACCCGCCGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCA                                                 <  SRR4302543.940822/94‑1 (MQ=60)

                                               CCCGCCAATCGGCCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAG                                                <  SRR4302543.2343698/94‑1 (MQ=60)

                                               CCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAG                                                >  SRR4302543.7387797/1‑94 (MQ=60)

                                               CCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAG                                                >  SRR4302543.2490356/1‑94 (MQ=60)

                                               CCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAG                                                >  SRR4302543.2871232/1‑94 (MQ=60)

                                               CCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGGCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAG                                                <  SRR4302543.6917188/94‑1 (MQ=60)

                                                 CGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGC                                              >  SRR4302543.6335117/1‑94 (MQ=60)

                                                   CCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGC                                            <  SRR4302543.418769/94‑1 (MQ=60)

                                                    CAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCA                                           <  SRR4302543.3186033/94‑1 (MQ=60)

                                                    CAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCA                                           <  SRR4302543.6608164/94‑1 (MQ=60)

                                                    CAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCA                                           >  SRR4302543.2603183/1‑94 (MQ=60)

                                                     AATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCAC                                          <  SRR4302543.3885628/94‑1 (MQ=60)

                                                     AATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGGCTTTTGCGAAGCAGAGGGCCAGGCGCAC                                          >  SRR4302543.4020182/1‑94 (MQ=60)

                                                      ATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACC                                         <  SRR4302543.7792575/94‑1 (MQ=60)

                                                      ATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACC                                         <  SRR4302543.4708443/94‑1 (MQ=60)

                                                      ATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACC                                         >  SRR4302543.6626056/1‑94 (MQ=60)

                                                      ATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACC                                         >  SRR4302543.2027536/1‑94 (MQ=60)

                                                      ATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACC                                         >  SRR4302543.244078/1‑94 (MQ=60)

                                                      ATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACC                                         >  SRR4302543.4663155/1‑94 (MQ=60)

                                                       TCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCG                                        <  SRR4302543.3961615/94‑1 (MQ=60)

                                                        CGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGT                                       >  SRR4302543.6035998/1‑94 (MQ=60)

                                                         GACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTT                                      >  SRR4302543.7794592/1‑94 (MQ=60)

                                                         GACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTT                                      >  SRR4302543.859890/1‑94 (MQ=60)

                                                           CCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTA                                    >  SRR4302543.4535476/1‑94 (MQ=60)

                                                           CCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTA                                    >  SRR4302543.2691778/1‑94 (MQ=60)

                                                           CCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTA                                    >  SRR4302543.7231984/1‑94 (MQ=60)

                                                            CCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAA                                   >  SRR4302543.7480492/1‑94 (MQ=60)

                                                            CCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAA                                   <  SRR4302543.2153976/94‑1 (MQ=60)

                                                            CCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAA                                   <  SRR4302543.7253919/94‑1 (MQ=60)

                                                             CTCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAG                                  >  SRR4302543.4533378/1‑94 (MQ=60)

                                                             CGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAG                                  >  SRR4302543.3197728/1‑94 (MQ=60)

                                                             CGCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAG                                  >  SRR4302543.6285411/1‑94 (MQ=60)

                                                              GCTGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGC                                 <  SRR4302543.3221487/94‑1 (MQ=60)

                                                              GCGGCGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTATGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGC                                 >  SRR4302543.7089501/1‑94 (MQ=60)

                                                                  CGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTA                             >  SRR4302543.2061257/1‑94 (MQ=60)

                                                                  CGTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTA                             >  SRR4302543.6382757/1‑94 (MQ=60)

                                                                   GTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAA                            >  SRR4302543.610038/1‑94 (MQ=60)

                                                                   GTGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAA                            <  SRR4302543.414318/94‑1 (MQ=60)

                                                                    TGAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAA                           >  SRR4302543.7471797/1‑94 (MQ=60)

                                                                     GAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAAT                          <  SRR4302543.7492165/94‑1 (MQ=60)

                                                                     GAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAAT                          <  SRR4302543.3383136/94‑1 (MQ=60)

                                                                     GAAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAAT                          <  SRR4302543.6062907/94‑1 (MQ=60)

                                                                      AAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATC                         <  SRR4302543.1781617/94‑1 (MQ=60)

                                                                      AAGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATA                         >  SRR4302543.4211426/1‑94 (MQ=60)

                                                                      AAGCGCATGTTATGTCCCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATC                         <  SRR4302543.4310299/94‑1 (MQ=60)

                                                                       AGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCG                        <  SRR4302543.2027747/94‑1 (MQ=60)

                                                                       AGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCG                        <  SRR4302543.6219193/94‑1 (MQ=60)

                                                                       AGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCG                        <  SRR4302543.753479/94‑1 (MQ=60)

                                                                       AGCGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCG                        <  SRR4302543.7112590/94‑1 (MQ=60)

                                                                       AGCGCATGTTAGGGCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCG                        <  SRR4302543.2702775/94‑1 (MQ=60)

                                                                         CGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCC                      <  SRR4302543.3349397/94‑1 (MQ=60)

                                                                         CGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCC                      >  SRR4302543.2795212/1‑94 (MQ=60)

                                                                         CGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCC                      >  SRR4302543.2075593/1‑94 (MQ=60)

                                                                         CGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCC                      >  SRR4302543.6106580/1‑94 (MQ=60)

                                                                         CGCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCC                      >  SRR4302543.7009062/1‑94 (MQ=60)

                                                                          GCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCG                     >  SRR4302543.6370700/1‑94 (MQ=60)

                                                                          GCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCG                     <  SRR4302543.3100700/94‑1 (MQ=60)

                                                                          CCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCG                     <  SRR4302543.5924190/94‑1 (MQ=60)

                                                                          CCATGTTATGTCGCTCGCCGCCAGTATCGGTCGTCAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCG                     <  SRR4302543.3100699/94‑1 (MQ=60)

                                                                           CATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGA                    >  SRR4302543.5078088/1‑94 (MQ=60)

                                                                            ATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGAT                   <  SRR4302543.3660430/94‑1 (MQ=60)

                                                                            ATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGAT                   >  SRR4302543.7757654/1‑94 (MQ=60)

                                                                            ATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGAT                   >  SRR4302543.7757653/1‑94 (MQ=60)

                                                                            ATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGAT                   <  SRR4302543.4825321/94‑1 (MQ=60)

                                                                            ATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGAT                   >  SRR4302543.458313/1‑94 (MQ=60)

                                                                            ATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGAT                   <  SRR4302543.5212028/94‑1 (MQ=60)

                                                                            ATGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGAT                   >  SRR4302543.7359560/1‑94 (MQ=60)

                                                                             TGTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATT                  >  SRR4302543.2707779/1‑94 (MQ=60)

                                                                              GTTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTC                 >  SRR4302543.5303060/1‑94 (MQ=60)

                                                                               TTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCT                <  SRR4302543.2590791/94‑1 (MQ=60)

                                                                               TTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCT                <  SRR4302543.5722348/94‑1 (MQ=60)

                                                                               TTATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCT                <  SRR4302543.3931297/94‑1 (MQ=60)

                                                                                 ATGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCTGC              <  SRR4302543.399950/94‑1 (MQ=60)

                                                                                  TGTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCTGCT             <  SRR4302543.3120537/94‑1 (MQ=60)

                                                                                   GTCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCTGCTC            <  SRR4302543.4387054/94‑1 (MQ=60)

                                                                                    TCGCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCTGCTCT           >  SRR4302543.6008264/1‑94 (MQ=60)

                                                                                    TCGCTCGCCGCCAGTAGCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCTGCTCT           <  SRR4302543.1261636/94‑1 (MQ=60)

                                                                                      CCTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCTGCTCTAC         <  SRR4302543.6032258/94‑1 (MQ=60)

                                                                                       CTCGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCTGCTCTACT        <  SRR4302543.7131300/94‑1 (MQ=60)

                                                                                         CGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCTGCTCTACTCC      <  SRR4302543.2176926/94‑1 (MQ=60)

                                                                                         CGCCGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCTGCTCTACTCC      >  SRR4302543.825403/1‑94 (MQ=60)

                                                                                            CGCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCTGCTCTACTCCGAT   >  SRR4302543.278210/1‑94 (MQ=60)

                                                                                             GCCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCTGCTCTACTCCGATT  <  SRR4302543.5034808/94‑1 (MQ=60)

CGCATTATTTACGACTACTTCCGCCAGCAGTTTGCCCAGGTGACTAACCCGCCAATCGACCCGCTGCGTGAAGCGCATGTTATGTCGCTCGCCACCAGTATCGGTCGTGAAATGAACGTCTTTTGCGAAGCAGAGGGCCAGGCGCACCGTTTAAGCTTTAAATCGCCGATTCTGCTCTACTCCGATT  >  NC_000913/3353857‑3354043

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`