Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,614,182	T→C	F124L (TTC→CTC)	nikC →	NikC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,614,182	0	T	C	99.7%	1193.1 / ‑5.4	377	F124L (TTC→CTC)	nikC	NikC
Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (194/181); total (195/182)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.42e-01

Only 100 of 395 total aligned reads displayed.

GGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGTTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGTG  >  NC_000913/3614092‑3614271

ggcAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTc                                                                                         <  1:2461599/93‑1 (MQ=255)

 gcAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGctct                                                                                        >  1:3548634/1‑93 (MQ=255)

 gcAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGctct                                                                                        >  2:1589352/1‑93 (MQ=255)

 gcAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGctct                                                                                        <  2:1388088/93‑1 (MQ=255)

 gcAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGctct                                                                                        >  1:1787869/1‑93 (MQ=255)

 gcAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGctct                                                                                        >  1:5024406/1‑93 (MQ=255)

    gcgcCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCtttt                                                                                     >  1:2085403/1‑92 (MQ=255)

    gcgcCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTa                                                                                     <  1:3891363/93‑1 (MQ=255)

        cGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGt                                                                                 <  2:3548114/93‑1 (MQ=255)

        cGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGt                                                                                 <  1:7569333/93‑1 (MQ=255)

         gggTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGtt                                                                                >  2:4466300/1‑93 (MQ=255)

          ggTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTg                                                                               >  2:802311/1‑93 (MQ=255)

          ggTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTg                                                                               >  1:4147777/1‑93 (MQ=255)

           gTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTgg                                                                              >  2:5190283/1‑93 (MQ=255)

            ttGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGc                                                                             <  1:6546142/93‑1 (MQ=255)

              gATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGt                                                                           >  1:1003495/1‑93 (MQ=255)

              gATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGGTGGCGt                                                                           >  1:6510457/1‑93 (MQ=255)

                 tGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCt                                                                        <  1:1264038/93‑1 (MQ=255)

                 tGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCt                                                                        <  2:2574863/93‑1 (MQ=255)

                     gggcgCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGc                                                                    >  1:67199/1‑93 (MQ=255)

                     gggcgCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGc                                                                    <  1:6896958/93‑1 (MQ=255)

                         gcgTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCg                                                                <  1:4762467/93‑1 (MQ=255)

                          cgTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCgg                                                               <  1:5066640/93‑1 (MQ=255)

                           gTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCggg                                                              >  2:466845/1‑93 (MQ=255)

                            ttGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGc                                                             >  1:4575050/1‑93 (MQ=255)

                            ttGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGc                                                             <  2:3309460/93‑1 (MQ=255)

                            ttGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGc                                                             <  1:1928454/93‑1 (MQ=255)

                            ttGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGc                                                             <  2:3498409/93‑1 (MQ=255)

                            ttGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGc                                                             >  2:169375/1‑93 (MQ=255)

                             tGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCt                                                            <  2:3373967/93‑1 (MQ=255)

                             tGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCt                                                            <  2:3959810/93‑1 (MQ=255)

                             tGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCt                                                            <  2:5422335/93‑1 (MQ=255)

                              gATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTg                                                           >  1:3415212/1‑93 (MQ=255)

                               aTCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGa                                                          >  1:1694652/1‑93 (MQ=255)

                                  aGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCa                                                       >  2:6965805/1‑93 (MQ=255)

                                    gCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAAc                                                     >  1:1351433/1‑93 (MQ=255)

                                     ccaccaTGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACg                                                    <  2:4076288/93‑1 (MQ=255)

                                      caccaTGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGt                                                   >  1:1589213/1‑93 (MQ=255)

                                      caccaTGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGt                                                   >  1:7189033/1‑93 (MQ=255)

                                       cccaTGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTa                                                  <  1:220011/92‑1 (MQ=255)

                                         caTGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAAt                                                <  1:6197450/93‑1 (MQ=255)

                                          aTGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACCGAAtt                                               >  2:5981867/1‑93 (MQ=255)

                                           tGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGTGTGCTCGGCACCGGGCTGACCAACGTAATTa                                              >  2:4260260/1‑93 (MQ=255)

                                           tGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTa                                              >  2:6782213/1‑93 (MQ=255)

                                           tGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTa                                              <  2:1862959/93‑1 (MQ=255)

                                           tGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTa                                              >  1:4209539/1‑93 (MQ=255)

                                            gcgcGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTat                                             <  2:7208446/93‑1 (MQ=255)

                                             cgcgTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatc                                            >  1:5375318/1‑93 (MQ=255)

                                                 tCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgcca                                        >  1:3094338/1‑93 (MQ=255)

                                                  cGCCTATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgccat                                       <  2:6143389/93‑1 (MQ=255)

                                                  cGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgccat                                       <  2:7628110/93‑1 (MQ=255)

                                                  cGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgccat                                       <  1:5718147/93‑1 (MQ=255)

                                                   gCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgccatc                                      >  2:5893418/1‑93 (MQ=255)

                                                   gCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgccatc                                      >  2:5681168/1‑93 (MQ=255)

                                                   gCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgccatc                                      >  1:6396804/1‑93 (MQ=255)

                                                   gCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgccatc                                      >  1:2822644/1‑93 (MQ=255)

                                                    ccGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgccatcg                                     <  2:1496893/93‑1 (MQ=255)

                                                     cGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgccatcgc                                    >  2:5361243/1‑93 (MQ=255)

                                                      gATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgccatcgcc                                   >  1:2929125/1‑93 (MQ=255)

                                                      gATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgccatcgcc                                   >  2:289905/1‑93 (MQ=255)

                                                       atatGTTTATGACCTTCCCGACCTCGATTCTGTCGTTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGccc                                  >  2:7727166/1‑93 (MQ=255)

                                                       atatGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTTACCAACGTAATTATCGCCATCGccc                                  <  2:2756884/93‑1 (MQ=255)

                                                       atatGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGccc                                  >  1:5591256/1‑93 (MQ=255)

                                                       atatGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGccc                                  <  2:6865715/93‑1 (MQ=255)

                                                        tatGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCt                                 >  1:2569552/1‑93 (MQ=255)

                                                        tatGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCt                                 >  2:7308418/1‑93 (MQ=255)

                                                        tatGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCt                                 >  1:4786707/1‑93 (MQ=255)

                                                        tatGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCt                                 >  1:7921103/1‑93 (MQ=255)

                                                        tatGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCt                                 <  2:373322/93‑1 (MQ=255)

                                                          tGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGGCCAACGTAATTATCGCCATCGCCCTGt                               >  1:6251124/1‑93 (MQ=255)

                                                          tGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGt                               >  2:2237744/1‑93 (MQ=255)

                                                            tttATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCg                             >  1:365284/1‑93 (MQ=255)

                                                               aTGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCAc                          >  1:953893/1‑93 (MQ=255)

                                                                 gACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTg                        >  2:1094569/1‑93 (MQ=255)

                                                                 gACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTg                        >  2:2612548/1‑93 (MQ=255)

                                                                  gacTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTgg                       <  2:6534952/91‑1 (MQ=255)

                                                                   ccTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTggg                      >  2:2812144/1‑93 (MQ=255)

                                                                   ccTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTggg                      <  2:6323161/93‑1 (MQ=255)

                                                                    cTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGc                     <  2:4791278/93‑1 (MQ=255)

                                                                    cTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGc                     >  1:6107055/1‑93 (MQ=255)

                                                                     ttCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCg                    >  2:2991605/1‑93 (MQ=255)

                                                                     ttCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCg                    <  2:3111738/93‑1 (MQ=255)

                                                                       cccGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTg                  <  1:7422772/93‑1 (MQ=255)

                                                                       cccGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTg                  <  2:7423180/93‑1 (MQ=255)

                                                                        ccGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTgg                 >  2:1969430/1‑93 (MQ=255)

                                                                         cGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGt                >  1:5813809/1‑93 (MQ=255)

                                                                           aCCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGGACCGGGATGACCAACGTAATTATCGCCATCGACCTGTCGCACTGGGCGTgggag              >  2:4596129/1‑90 (MQ=255)

                                                                           aCCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTAt              <  2:1787869/93‑1 (MQ=255)

                                                                           aCCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTAt              >  1:777543/1‑93 (MQ=255)

                                                                           aCCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTAt              >  1:7341809/1‑93 (MQ=255)

                                                                             cTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGc            <  1:889280/93‑1 (MQ=255)

                                                                              tCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCa           <  1:1523781/93‑1 (MQ=255)

                                                                               cGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCAc          <  1:707659/93‑1 (MQ=255)

                                                                               cGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCAc          <  1:4866720/93‑1 (MQ=255)

                                                                                gATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACg         >  2:2432821/1‑93 (MQ=255)

                                                                                gATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACg         >  1:3235959/1‑93 (MQ=255)

                                                                                 aTTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGc        >  2:5531954/1‑93 (MQ=255)

                                                                                 aTTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGc        >  2:494922/1‑93 (MQ=255)

                                                                                      gTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGt   <  1:1063048/93‑1 (MQ=255)

                                                                                       tCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGTg  >  2:75513/1‑93 (MQ=255)

GGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGTTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGTG  >  NC_000913/3614092‑3614271

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 209 total aligned reads displayed.

GGCGGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGTTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGTGCGCA  >  NC_000913/3614089‑3614275

GGCGGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCCCCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGC                                                                                               >  SRR4302543.7189534/1‑94 (MQ=60)

 GCGGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCT                                                                                              <  SRR4302543.1688731/94‑1 (MQ=60)

  CGGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTC                                                                                             <  SRR4302543.2540387/94‑1 (MQ=60)

   GGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCT                                                                                            >  SRR4302543.4204842/1‑94 (MQ=60)

   GGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCT                                                                                            >  SRR4302543.3580126/1‑94 (MQ=60)

   GGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCT                                                                                            >  SRR4302543.3167404/1‑94 (MQ=60)

   GGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCT                                                                                            >  SRR4302543.3167403/1‑94 (MQ=60)

   GGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCT                                                                                            <  SRR4302543.2483791/94‑1 (MQ=60)

   GGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCT                                                                                            >  SRR4302543.5070129/1‑94 (MQ=60)

   GGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCT                                                                                            >  SRR4302543.1803861/1‑94 (MQ=60)

    GCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTT                                                                                           >  SRR4302543.5343120/1‑94 (MQ=60)

      AGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTT                                                                                         >  SRR4302543.7409320/1‑94 (MQ=60)

      AGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTT                                                                                         >  SRR4302543.2104022/1‑94 (MQ=60)

      AGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTA                                                                                         >  SRR4302543.6268842/1‑94 (MQ=60)

      AGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTA                                                                                         <  SRR4302543.7455106/94‑1 (MQ=60)

      AGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTA                                                                                         >  SRR4302543.5003443/1‑94 (MQ=60)

       GCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTAT                                                                                        <  SRR4302543.3925720/94‑1 (MQ=60)

        CGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATG                                                                                       <  SRR4302543.1468399/94‑1 (MQ=60)

        CGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATG                                                                                       <  SRR4302543.1046625/94‑1 (MQ=60)

          CCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGT                                                                                     <  SRR4302543.5784917/94‑1 (MQ=60)

          CCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGT                                                                                     <  SRR4302543.251083/94‑1 (MQ=60)

           CGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTT                                                                                    <  SRR4302543.259565/94‑1 (MQ=60)

           CGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTT                                                                                    <  SRR4302543.7641349/94‑1 (MQ=60)

           CGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTT                                                                                    <  SRR4302543.5722731/94‑1 (MQ=60)

           CGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTT                                                                                    >  SRR4302543.432554/1‑94 (MQ=60)

            GGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATTGTTG                                                                                   >  SRR4302543.1696556/1‑94 (MQ=60)

            GGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTG                                                                                   >  SRR4302543.4185271/1‑94 (MQ=60)

            GGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTG                                                                                   <  SRR4302543.5043194/94‑1 (MQ=60)

            GGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTG                                                                                   <  SRR4302543.2487130/94‑1 (MQ=60)

              GTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGGTTCTGTCGCTCTTTATGGTTGGC                                                                                 >  SRR4302543.5206974/1‑94 (MQ=60)

               TTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCG                                                                                <  SRR4302543.6607753/94‑1 (MQ=60)

                TGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGT                                                                               >  SRR4302543.2227000/1‑94 (MQ=60)

                TGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGT                                                                               >  SRR4302543.1012367/1‑94 (MQ=60)

                TGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGGTGGCGT                                                                               >  SRR4302543.6571783/1‑94 (MQ=60)

                 GATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTG                                                                              >  SRR4302543.6299809/1‑94 (MQ=60)

                  ATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGC                                                                             >  SRR4302543.6380788/1‑94 (MQ=60)

                  ATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGC                                                                             >  SRR4302543.3241088/1‑94 (MQ=60)

                  ATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGGCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTTGCTCTTTATCGTTGGCGTGC                                                                             >  SRR4302543.6759012/1‑94 (MQ=60)

                    TGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTC                                                                           <  SRR4302543.1275357/94‑1 (MQ=60)

                      GCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGG                                                                         <  SRR4302543.5091846/94‑1 (MQ=60)

                       CGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGC                                                                        <  SRR4302543.6768329/94‑1 (MQ=60)

                       CGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGC                                                                        >  SRR4302543.67799/1‑94 (MQ=60)

                        GGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCA                                                                       <  SRR4302543.7271694/94‑1 (MQ=60)

                        GGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCA                                                                       <  SRR4302543.6961779/94‑1 (MQ=60)

                        GGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCA                                                                       <  SRR4302543.3493860/94‑1 (MQ=60)

                          GCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACC                                                                     <  SRR4302543.1350772/94‑1 (MQ=60)

                           CGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCG                                                                    >  SRR4302543.6527742/1‑94 (MQ=60)

                            GCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGG                                                                   <  SRR4302543.4805985/94‑1 (MQ=60)

                            GCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGG                                                                   >  SRR4302543.627435/1‑94 (MQ=60)

                            GCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGG                                                                   <  SRR4302543.2114176/94‑1 (MQ=60)

                            GCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCAG                                                                   <  SRR4302543.7718827/94‑1 (MQ=60)

                             CGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGG                                                                  >  SRR4302543.1197541/1‑94 (MQ=60)

                             CGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGG                                                                  >  SRR4302543.2569380/1‑94 (MQ=60)

                             CGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGG                                                                  <  SRR4302543.5112637/94‑1 (MQ=60)

                              GTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGC                                                                 >  SRR4302543.3004987/1‑94 (MQ=60)

                              GTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGC                                                                 >  SRR4302543.4616647/1‑94 (MQ=60)

                               TTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCT                                                                <  SRR4302543.5822383/94‑1 (MQ=60)

                               TTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCT                                                                <  SRR4302543.1945819/94‑1 (MQ=60)

                               TTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCT                                                                <  SRR4302543.3677574/94‑1 (MQ=60)

                               TTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCT                                                                <  SRR4302543.3310846/94‑1 (MQ=60)

                               TTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCT                                                                <  SRR4302543.3310845/94‑1 (MQ=60)

                                TGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTG                                                               >  SRR4302543.3445784/1‑94 (MQ=60)

                                TGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTG                                                               <  SRR4302543.7771900/94‑1 (MQ=60)

                                 GATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGA                                                              >  SRR4302543.1709852/1‑94 (MQ=60)

                                   TCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACC                                                            <  SRR4302543.7561306/94‑1 (MQ=60)

                                   TCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACC                                                            >  SRR4302543.6539681/1‑94 (MQ=60)

                                   TCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACC                                                            <  SRR4302543.1481/94‑1 (MQ=60)

                                    CAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCA                                                           <  SRR4302543.2313221/94‑1 (MQ=60)

                                    CAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCA                                                           <  SRR4302543.7859870/94‑1 (MQ=60)

                                    CAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCA                                                           >  SRR4302543.5491819/1‑94 (MQ=60)

                                     AGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAC                                                          >  SRR4302543.2190965/1‑94 (MQ=60)

                                     AGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAA                                                          >  SRR4302543.2713100/1‑94 (MQ=60)

                                     AGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAA                                                          >  SRR4302543.6802379/1‑94 (MQ=60)

                                      GGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAAC                                                         >  SRR4302543.1363524/1‑94 (MQ=60)

                                       GCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACG                                                        <  SRR4302543.5432895/94‑1 (MQ=60)

                                        CCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGT                                                       >  SRR4302543.1603399/1‑94 (MQ=60)

                                        CCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGT                                                       >  SRR4302543.2474634/1‑94 (MQ=60)

                                        CCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGT                                                       >  SRR4302543.7258767/1‑94 (MQ=60)

                                         CACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTA                                                      >  SRR4302543.344679/1‑94 (MQ=60)

                                         CACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTA                                                      >  SRR4302543.7515990/1‑94 (MQ=60)

                                          CCCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAA                                                     <  SRR4302543.221908/94‑1 (MQ=60)

                                          ACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAA                                                     >  SRR4302543.7832098/1‑94 (MQ=60)

                                           CCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAAT                                                    <  SRR4302543.2019712/94‑1 (MQ=60)

                                            CATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATT                                                   <  SRR4302543.6255985/94‑1 (MQ=60)

                                            CATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATT                                                   <  SRR4302543.94296/94‑1 (MQ=60)

                                            CATGCGAGTCGCCGATATGTTTAGCACCTGTCCGACCGCGATGATGTCGATCTGTATGGTGGGCGTGATCGGCACCGGGCTGACCAACGTAATT                                                   <  SRR4302543.3458836/94‑1 (MQ=23)

                                             ATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTA                                                  >  SRR4302543.4866143/1‑94 (MQ=60)

                                             ATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTA                                                  >  SRR4302543.4247704/1‑94 (MQ=60)

                                              ggcgctgcgcctATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTAT                                                 <  SRR4302543.3345880/82‑1 (MQ=60)

                                              TGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTAT                                                 <  SRR4302543.5116798/94‑1 (MQ=60)

                                              TGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTAT                                                 <  SRR4302543.826298/94‑1 (MQ=60)

                                               GCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATC                                                <  SRR4302543.4084044/94‑1 (MQ=60)

                                               GCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATC                                                >  SRR4302543.3933052/1‑94 (MQ=60)

                                               GCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATC                                                >  SRR4302543.5424011/1‑94 (MQ=60)

                                                CGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCG                                               <  SRR4302543.4196460/94‑1 (MQ=60)

                                                   GTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCA                                            <  SRR4302543.287335/94‑1 (MQ=60)

                                                   GTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCA                                            <  SRR4302543.1586283/94‑1 (MQ=60)

                                                   GTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCA                                            >  SRR4302543.6323598/1‑94 (MQ=60)

                                                   GTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCA                                            >  SRR4302543.3122170/1‑94 (MQ=60)

                                                    TCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCAT                                           <  SRR4302543.1034973/94‑1 (MQ=60)

                                                    TCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCAT                                           <  SRR4302543.3909369/94‑1 (MQ=60)

                                                     CGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATC                                          <  SRR4302543.384726/94‑1 (MQ=60)

                                                     CGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATC                                          >  SRR4302543.2848468/1‑94 (MQ=60)

                                                     CGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATC                                          >  SRR4302543.2801889/1‑94 (MQ=60)

                                                     CGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATC                                          <  SRR4302543.3046875/94‑1 (MQ=60)

                                                     CGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATC                                          <  SRR4302543.6594148/94‑1 (MQ=60)

                                                     CGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATC                                          <  SRR4302543.6594147/94‑1 (MQ=60)

                                                     CGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATC                                          <  SRR4302543.4743260/94‑1 (MQ=60)

                                                     CGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATC                                          <  SRR4302543.5770321/94‑1 (MQ=60)

                                                     CGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATC                                          >  SRR4302543.386114/1‑94 (MQ=60)

                                                     CGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATC                                          >  SRR4302543.6457023/1‑94 (MQ=60)

                                                     CGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATC                                          <  SRR4302543.58720/94‑1 (MQ=60)

                                                      GCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCG                                         <  SRR4302543.5843641/94‑1 (MQ=60)

                                                      GCCGATATGTTTATGACCTGCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCG                                         <  SRR4302543.1737922/94‑1 (MQ=60)

                                                       CCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGC                                        >  SRR4302543.4825961/1‑94 (MQ=60)

                                                       CCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTT‑GCGTGCTCGGACCCGGGCTGACCAACCTAATTAacgcccttccc                                       >  SRR4302543.2310957/1‑83 (MQ=60)

                                                        CGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTCATTATCGCCATCGCC                                       >  SRR4302543.2936963/1‑94 (MQ=60)

                                                        CGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCC                                       >  SRR4302543.7978060/1‑94 (MQ=60)

                                                        CGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCC                                       >  SRR4302543.7247433/1‑94 (MQ=60)

                                                        CGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCC                                       >  SRR4302543.4810644/1‑94 (MQ=60)

                                                        CGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCC                                       >  SRR4302543.7461166/1‑94 (MQ=60)

                                                        CGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCC                                       >  SRR4302543.2955731/1‑94 (MQ=60)

                                                        CGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGAC                                       >  SRR4302543.1926060/1‑94 (MQ=60)

                                                         GATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCC                                      >  SRR4302543.466701/1‑94 (MQ=60)

                                                         GATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCC                                      >  SRR4302543.5642189/1‑94 (MQ=60)

                                                          ATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCT                                     >  SRR4302543.5696534/1‑94 (MQ=60)

                                                          ATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCT                                     >  SRR4302543.940095/1‑94 (MQ=60)

                                                          ATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCT                                     >  SRR4302543.7995506/1‑94 (MQ=60)

                                                          ATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCT                                     >  SRR4302543.4830463/1‑94 (MQ=60)

                                                          ATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCT                                     >  SRR4302543.2593001/1‑94 (MQ=60)

                                                          ATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCT                                     >  SRR4302543.6907429/1‑94 (MQ=60)

                                                            ATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGGCCAACGTAATTATCGCCATCGCCCTGT                                   >  SRR4302543.6310093/1‑94 (MQ=60)

                                                              GTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCG                                 <  SRR4302543.4757676/94‑1 (MQ=60)

                                                              GTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCG                                 >  SRR4302543.368665/1‑94 (MQ=60)

                                                              GTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCG                                 >  SRR4302543.7091263/1‑94 (MQ=60)

                                                               TTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGC                                >  SRR4302543.937966/1‑94 (MQ=60)

                                                                 TATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCAC                              <  SRR4302543.163920/94‑1 (MQ=60)

                                                                 TATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCAC                              <  SRR4302543.7915654/94‑1 (MQ=60)

                                                                 TATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCAC                              >  SRR4302543.962253/1‑94 (MQ=60)

                                                                  ATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACT                             <  SRR4302543.1913993/94‑1 (MQ=60)

                                                                   TGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTG                            <  SRR4302543.4283079/94‑1 (MQ=60)

                                                                   TGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTG                            <  SRR4302543.6674274/94‑1 (MQ=60)

                                                                   TGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTG                            <  SRR4302543.1000811/94‑1 (MQ=60)

                                                                   TGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTG                            <  SRR4302543.1321124/94‑1 (MQ=60)

                                                                    GACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGG                           >  SRR4302543.7451236/1‑94 (MQ=60)

                                                                    GACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGG                           >  SRR4302543.884205/1‑94 (MQ=60)

                                                                      CCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGC                         <  SRR4302543.4825981/94‑1 (MQ=60)

                                                                      CCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGC                         >  SRR4302543.6164917/1‑94 (MQ=60)

                                                                      CCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGC                         >  SRR4302543.6164916/1‑94 (MQ=60)

                                                                       CTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCG                        >  SRR4302543.1774914/1‑94 (MQ=60)

                                                                       CTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCG                        >  SRR4302543.5630159/1‑94 (MQ=60)

                                                                       CTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCG                        >  SRR4302543.5725878/1‑94 (MQ=60)

                                                                       CTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCG                        <  SRR4302543.6227988/94‑1 (MQ=60)

                                                                          CCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGG                     <  SRR4302543.6499224/94‑1 (MQ=60)

                                                                          CCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGG                     >  SRR4302543.1103611/1‑94 (MQ=60)

                                                                          CCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGG                     >  SRR4302543.1217792/1‑94 (MQ=60)

                                                                           CCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGT                    >  SRR4302543.5866674/1‑94 (MQ=60)

                                                                           CCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGT                    >  SRR4302543.754901/1‑94 (MQ=60)

                                                                           CCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGT                    >  SRR4302543.4397506/1‑94 (MQ=60)

                                                                            CGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTA                   >  SRR4302543.1548939/1‑94 (MQ=60)

                                                                            CGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATAGCCATCGCCCTGTCGCACTGGGCGAGGTA                   >  SRR4302543.1935378/1‑94 (MQ=60)

                                                                             GACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTAT                  >  SRR4302543.3318234/1‑94 (MQ=60)

                                                                             GACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTAT                  >  SRR4302543.7412441/1‑94 (MQ=60)

                                                                             GACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTAT                  <  SRR4302543.2857435/94‑1 (MQ=60)

                                                                             GACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTAT                  >  SRR4302543.784374/1‑94 (MQ=60)

                                                                             CACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTAT                  <  SRR4302543.4858070/94‑1 (MQ=60)

                                                                              ACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCATCGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATG                 <  SRR4302543.6370328/94‑1 (MQ=60)

                                                                              ACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATG                 <  SRR4302543.7185282/94‑1 (MQ=60)

                                                                               CCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGC                >  SRR4302543.2063786/1‑94 (MQ=60)

                                                                               CCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGC                >  SRR4302543.3048742/1‑94 (MQ=60)

                                                                               CCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGC                >  SRR4302543.5364962/1‑94 (MQ=60)

                                                                                CTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCA               <  SRR4302543.897148/94‑1 (MQ=60)

                                                                                 TCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGTGCGTGGTATGCAC              <  SRR4302543.7045345/94‑1 (MQ=60)

                                                                                 TCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCAC              <  SRR4302543.4865368/94‑1 (MQ=60)

                                                                                 TCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCAC              <  SRR4302543.3459619/94‑1 (MQ=60)

                                                                                 TCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCAC              <  SRR4302543.1537460/94‑1 (MQ=60)

                                                                                 TCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCAC              <  SRR4302543.7998284/94‑1 (MQ=60)

                                                                                 TCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCAC              <  SRR4302543.6801178/94‑1 (MQ=60)

                                                                                  CGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACG             <  SRR4302543.5953185/94‑1 (MQ=60)

                                                                                  CGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACG             >  SRR4302543.5091803/1‑94 (MQ=60)

                                                                                  CGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACG             >  SRR4302543.7328091/1‑94 (MQ=60)

                                                                                  CGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACG             <  SRR4302543.7166340/94‑1 (MQ=60)

                                                                                  CGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACG             <  SRR4302543.714095/94‑1 (MQ=60)

                                                                                  CGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACG             <  SRR4302543.4911083/94‑1 (MQ=60)

                                                                                   GATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGC            >  SRR4302543.6216336/1‑94 (MQ=60)

                                                                                   GATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGC            >  SRR4302543.1517237/1‑94 (MQ=60)

                                                                                    ATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCA           <  SRR4302543.2138384/94‑1 (MQ=60)

                                                                                       CTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGG        <  SRR4302543.1565480/94‑1 (MQ=60)

                                                                                       CTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGG        <  SRR4302543.3596948/94‑1 (MQ=60)

                                                                                       CTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGG        <  SRR4302543.3607902/94‑1 (MQ=60)

                                                                                       CTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGG        >  SRR4302543.4970719/1‑94 (MQ=60)

                                                                                       CTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGG        <  SRR4302543.1778675/94‑1 (MQ=60)

                                                                                        TGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGT       <  SRR4302543.1315617/94‑1 (MQ=60)

                                                                                        TGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGT       >  SRR4302543.6590521/1‑94 (MQ=60)

                                                                                         GTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGTG      <  SRR4302543.2062053/94‑1 (MQ=60)

                                                                                         GTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGTG      <  SRR4302543.1072593/94‑1 (MQ=60)

                                                                                          TCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGTGC     >  SRR4302543.7855267/1‑94 (MQ=60)

                                                                                           CGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGTGCG    >  SRR4302543.1386746/1‑94 (MQ=60)

                                                                                            GCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGTGCGC   >  SRR4302543.872282/1‑94 (MQ=60)

                                                                                             CTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGTGCGCA  >  SRR4302543.4085731/1‑94 (MQ=60)

GGCGGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGTTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGTGCGCA  >  NC_000913/3614089‑3614275

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`