Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,957,560 +C intergenic (‑129/‑732) ppiC ← / → rep peptidyl‑prolyl cis‑trans isomerase C/rep helicase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,957,5581.C100.0% 972.2 / NA 303intergenic (‑127/‑734)ppiC/reppeptidyl‑prolyl cis‑trans isomerase C/rep helicase
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (142/161);  total (142/161)

Only 100 of 325 total aligned reads displayed.

AGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑C‑T‑GC‑‑TCGCAGGT‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATG  >  NC_000913/3957471‑3957645
                                                                                             |                                                                                       
aGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGT‑ccc                                                                                      >  1:7779145/1‑92 (MQ=255)
 gCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGT‑ccct                                                                                     >  1:3780419/1‑91 (MQ=255)
     gATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAg                                                                                  >  2:5514374/1‑93 (MQ=255)
     gATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGACCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAg                                                                                  >  2:3786030/1‑93 (MQ=255)
      aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAgg                                                                                 <  2:5616166/93‑1 (MQ=255)
      aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAgg                                                                                 >  1:5738552/1‑93 (MQ=255)
       tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAggg                                                                                >  1:3056632/1‑93 (MQ=255)
       tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAggg                                                                                >  2:5975651/1‑93 (MQ=255)
         cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGga                                                                              >  1:6675462/1‑93 (MQ=255)
             gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGaaa                                                                          >  2:847809/1‑93 (MQ=255)
             gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGaaa                                                                          >  2:2164556/1‑93 (MQ=255)
             gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGaaa                                                                          >  2:3301149/1‑93 (MQ=255)
             gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATTGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGgaa                                                                          >  2:3236335/1‑93 (MQ=255)
              aTGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATTGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCCAGGGGAGaaaa                                                                         >  2:1888297/1‑93 (MQ=255)
              aTGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGaaaa                                                                         <  2:4461026/93‑1 (MQ=255)
              aTGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑C‑GGGCT‑TCGCAGGTCCCTCAAGGGGAGaaaa                                                                         <  2:1181422/93‑1 (MQ=255)
              aTGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑C‑GGGCT‑TCGCAGGTCCCTCAAGGGGAGaaaa                                                                         <  1:5022228/93‑1 (MQ=255)
               tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAAc                                                                        <  1:2988265/93‑1 (MQ=255)
               tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAAc                                                                        >  1:5541527/1‑93 (MQ=255)
                gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACt                                                                       >  1:4734322/1‑93 (MQ=255)
                 cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATTGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACtt                                                                      >  2:5280072/1‑93 (MQ=255)
                 cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACtt                                                                      <  2:6397098/93‑1 (MQ=255)
                 cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACtt                                                                      >  1:1016958/1‑93 (MQ=255)
                  tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTa                                                                     >  1:3986758/1‑93 (MQ=255)
                  tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTa                                                                     >  1:2291734/1‑93 (MQ=255)
                  tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTa                                                                     >  1:6304532/1‑93 (MQ=255)
                   aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAg                                                                    <  1:1727381/93‑1 (MQ=255)
                   aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAg                                                                    >  2:3389149/1‑93 (MQ=255)
                   aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAg                                                                    <  2:6156502/93‑1 (MQ=255)
                     cGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAAATTAggg                                                                  >  2:3024452/1‑93 (MQ=255)
                      gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGc                                                                 <  2:6752282/93‑1 (MQ=255)
                       tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGcc                                                                >  2:2045793/1‑93 (MQ=255)
                       tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGcc                                                                <  1:823182/93‑1 (MQ=255)
                       tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGcc                                                                >  1:1364343/1‑93 (MQ=255)
                        aaTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCct                                                               >  1:4623059/1‑93 (MQ=255)
                        aaTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCct                                                               >  1:5115053/1‑93 (MQ=255)
                         aTTGTCAGGCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCctc                                                              <  1:5174879/93‑1 (MQ=255)
                            gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTAt                                                           <  2:467456/93‑1 (MQ=255)
                             tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATg                                                          >  1:1172747/1‑93 (MQ=255)
                             tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATg                                                          <  2:4414582/93‑1 (MQ=255)
                              cagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg                                                         <  2:6546405/93‑1 (MQ=255)
                                  cagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTa                                                     <  2:7535113/93‑1 (MQ=255)
                                     ggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa                                                  <  1:7429987/93‑1 (MQ=255)
                                      gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa                                                 <  2:2873017/93‑1 (MQ=255)
                                       aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg                                                <  2:2811533/93‑1 (MQ=255)
                                         tGGCTGGTACATATATGGCAACAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc                                              <  2:2330600/93‑1 (MQ=255)
                                         tGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑C‑GGGCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc                                              >  2:111768/1‑93 (MQ=255)
                                           gCTGGTACATATATGGTAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt                                            <  2:5179412/93‑1 (MQ=255)
                                           gCTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt                                            <  2:5697526/93‑1 (MQ=255)
                                           gCTGGTACATATATGGCAAAAGCCCGAAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt                                            <  1:3129130/93‑1 (MQ=255)
                                            cTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt                                           <  1:448682/93‑1 (MQ=255)
                                            cTGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt                                           <  1:4108286/93‑1 (MQ=255)
                                            cTGGTACATATATGGCAAAAGCCCGGAAAATC‑C‑G‑GCCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt                                           <  1:6959356/93‑1 (MQ=255)
                                             tGGTACATATATGGCAAAAGCCCGGGAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                                          <  2:5135937/93‑1 (MQ=255)
                                             tGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                                          <  1:2877595/93‑1 (MQ=255)
                                             tGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                                          <  1:1609627/93‑1 (MQ=255)
                                             tGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                                          <  1:2390388/93‑1 (MQ=255)
                                             tGGTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                                          <  2:4038947/93‑1 (MQ=255)
                                             tGGTACATATATGGCAAAAGCCCGGAAAATC‑C‑GGGCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                                          >  2:745500/1‑93 (MQ=255)
                                              ggTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                                         <  1:1214886/93‑1 (MQ=255)
                                              ggTACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                                         <  1:6947204/93‑1 (MQ=255)
                                               gTACATATATGGCAAAAGCCCGGAAAATC‑C‑GGGCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc                                        >  2:6484374/1‑93 (MQ=255)
                                                tACATATATGGCAAAAGCCCGGAAACTC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg                                       <  1:1530851/93‑1 (MQ=255)
                                                tACATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg                                       <  2:6243400/93‑1 (MQ=255)
                                                 aCATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg                                      <  2:1015980/93‑1 (MQ=255)
                                                  cATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                                     <  2:1493795/93‑1 (MQ=255)
                                                  cATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                                     <  1:6377959/93‑1 (MQ=255)
                                                  cATATATGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                                     >  1:7687587/1‑93 (MQ=255)
                                                   atatatGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg                                    >  2:2496527/1‑93 (MQ=255)
                                                   atatatGAAAAAAGCCGGGAAAATCGG‑G‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg                                    <  2:2904237/93‑1 (MQ=255)
                                                    tatatGGCAGAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGCGAAAAATTAGGGCCTCTCTGGGCTACAAAGTCATTATCGGGGa                                   <  2:7030050/93‑1 (MQ=255)
                                                    tatatGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                                   <  2:332520/93‑1 (MQ=255)
                                                    tatatGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                                   <  2:7145380/93‑1 (MQ=255)
                                                    tatatGGCAAAAGCCCGGAAAATC‑C‑GGGCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                                   >  1:6134041/1‑93 (MQ=255)
                                                     atatGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt                                  <  2:1657477/93‑1 (MQ=255)
                                                     atatGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt                                  >  1:113035/1‑93 (MQ=255)
                                                       atGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATgg                                <  1:5324926/93‑1 (MQ=255)
                                                        tGGCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt                               >  2:7609268/1‑93 (MQ=255)
                                                          gCAAAAGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta                             >  2:4933352/1‑93 (MQ=255)
                                                            aaaaGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt                           >  1:7402266/1‑93 (MQ=255)
                                                             aaaGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGTCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt                          >  1:3920899/1‑93 (MQ=255)
                                                             aaaGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt                          <  2:2265453/93‑1 (MQ=255)
                                                             aaaGCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt                          >  2:3104555/1‑93 (MQ=255)
                                                               aGCCCGGAAAAAC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta                        <  2:4892842/93‑1 (MQ=255)
                                                                gCCCGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat                       >  2:691460/1‑93 (MQ=255)
                                                                gCCCGGAAAATC‑C‑GGGCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat                       >  1:5925210/1‑93 (MQ=255)
                                                                 cccGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt                      <  2:7004594/93‑1 (MQ=255)
                                                                  ccGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg                     <  2:2670672/93‑1 (MQ=255)
                                                                  ccGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg                     >  1:2567450/1‑93 (MQ=255)
                                                                  ccGGAAAATC‑CGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg                     <  2:7837778/93‑1 (MQ=255)
                                                                                 ggcttCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAg         <  1:4384228/89‑1 (MQ=255)
                                                                                  gcttCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGc        <  2:414864/90‑1 (MQ=255)
                                                                                   cttCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCg       <  1:2223550/91‑1 (MQ=255)
                                                                                    ttCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGa      <  1:7310165/92‑1 (MQ=255)
                                                                                    ttCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGa      >  2:5384531/2‑93 (MQ=255)
                                                                                      cGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGata    <  1:6413956/93‑1 (MQ=255)
                                                                                       gCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGatat   <  2:4100698/93‑1 (MQ=255)
                                                                                        cAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATg  >  1:7170006/1‑93 (MQ=255)
                                                                                        cAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATg  >  2:1002374/1‑93 (MQ=255)
                                                                                        cAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATg  >  2:2471474/1‑93 (MQ=255)
                                                                                             |                                                                                       
AGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATC‑C‑T‑GC‑‑TCGCAGGT‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATG  >  NC_000913/3957471‑3957645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑TG‑‑C‑‑T‑CGCAGGT‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCATTGAT  >  NC_000913/3957478‑3957653
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TCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGG                                                                                       <  SRR4302543.3206911/94‑1 (MQ=60)
 CCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGA                                                                                      <  SRR4302543.821600/94‑1 (MQ=60)
 CCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGA                                                                                      >  SRR4302543.6738488/1‑94 (MQ=60)
  CGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAG                                                                                     >  SRR4302543.3158707/1‑94 (MQ=60)
   GCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGA                                                                                    <  SRR4302543.4692787/94‑1 (MQ=60)
     AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCCAGGGGAGAAA                                                                                  >  SRR4302543.1143234/1‑94 (MQ=60)
      GATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCGAGGGGAGAAAA                                                                                 >  SRR4302543.4657408/1‑94 (MQ=60)
       ATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAAC                                                                                <  SRR4302543.5067932/94‑1 (MQ=60)
       ATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAAC                                                                                >  SRR4302543.7410866/1‑94 (MQ=60)
       ATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAAC                                                                                >  SRR4302543.5591915/1‑94 (MQ=60)
        TGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGGAAACT                                                                               >  SRR4302543.4506441/1‑94 (MQ=60)
        TGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACT                                                                               <  SRR4302543.3015399/94‑1 (MQ=60)
        TGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACT                                                                               >  SRR4302543.4976400/1‑94 (MQ=60)
        TGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACT                                                                               >  SRR4302543.7244276/1‑94 (MQ=60)
        TGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACT                                                                               >  SRR4302543.4777591/1‑94 (MQ=60)
         GCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTT                                                                              >  SRR4302543.1025953/1‑94 (MQ=60)
          CTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTA                                                                             >  SRR4302543.2170059/1‑94 (MQ=60)
          CTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTA                                                                             >  SRR4302543.4022162/1‑94 (MQ=60)
          CTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTA                                                                             >  SRR4302543.2312650/1‑94 (MQ=60)
          CTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTA                                                                             >  SRR4302543.6363841/1‑94 (MQ=60)
           TAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAG                                                                            <  SRR4302543.6161410/94‑1 (MQ=60)
           TAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAG                                                                            <  SRR4302543.6439917/94‑1 (MQ=60)
           TAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAG                                                                            <  SRR4302543.3103903/94‑1 (MQ=60)
           CAACGTAATTGTCAGACAAGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGG‑‑C‑‑TCCGCAGGTCCCTCAAGGGGAGAAAACTTAG                                                                            <  SRR4302543.6439918/94‑1 (MQ=60)
            AACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGG                                                                           <  SRR4302543.1742777/94‑1 (MQ=60)
            AACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGG                                                                           >  SRR4302543.6283922/1‑94 (MQ=60)
            AACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGG                                                                           <  SRR4302543.7936356/94‑1 (MQ=60)
            AACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGG                                                                           >  SRR4302543.2287537/1‑94 (MQ=60)
               GTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCC                                                                        >  SRR4302543.1376569/1‑94 (MQ=60)
               GTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCC                                                                        <  SRR4302543.2860271/94‑1 (MQ=60)
               GTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCC                                                                        >  SRR4302543.5500202/1‑94 (MQ=60)
                TAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCT                                                                       >  SRR4302543.4665061/1‑94 (MQ=60)
                TAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCT                                                                       >  SRR4302543.5198651/1‑94 (MQ=60)
                TAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCT                                                                       >  SRR4302543.5161328/1‑94 (MQ=60)
                TAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCT                                                                       <  SRR4302543.830442/94‑1 (MQ=60)
                  ATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCT                                                                     <  SRR4302543.1198321/94‑1 (MQ=60)
                  ATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCT                                                                     >  SRR4302543.1407593/1‑94 (MQ=60)
                  ATTGTCAGGCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCT                                                                     <  SRR4302543.5221604/94‑1 (MQ=60)
                    TGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTAT                                                                   <  SRR4302543.4930178/94‑1 (MQ=60)
                    TGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTAT                                                                   <  SRR4302543.3000044/94‑1 (MQ=60)
                     GTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCCAGGGGAGAAAACTTAGGGCCTCTTTG                                                                  >  SRR4302543.7024249/1‑94 (MQ=60)
                     GTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATG                                                                  <  SRR4302543.6949361/94‑1 (MQ=60)
                     GTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATG                                                                  >  SRR4302543.7023996/1‑94 (MQ=60)
                     GTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATG                                                                  >  SRR4302543.1183382/1‑94 (MQ=60)
                     GTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATG                                                                  <  SRR4302543.1322395/94‑1 (MQ=60)
                     GTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATG                                                                  >  SRR4302543.5273310/1‑94 (MQ=60)
                      TCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGG                                                                 <  SRR4302543.3899190/94‑1 (MQ=60)
                       CAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGG                                                                >  SRR4302543.4726880/1‑94 (MQ=60)
                       CAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGG                                                                <  SRR4302543.3344900/94‑1 (MQ=60)
                        AGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGC                                                               <  SRR4302543.302958/94‑1 (MQ=60)
                        AGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGC                                                               >  SRR4302543.4032912/1‑94 (MQ=60)
                        AGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGC                                                               >  SRR4302543.741429/1‑94 (MQ=60)
                         GTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCT                                                              >  SRR4302543.1712533/1‑94 (MQ=60)
                         GTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCT                                                              <  SRR4302543.5569392/94‑1 (MQ=60)
                         GTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCT                                                              >  SRR4302543.604161/1‑94 (MQ=60)
                           CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC                                                            >  SRR4302543.4216177/1‑94 (MQ=60)
                           CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC                                                            >  SRR4302543.749344/1‑94 (MQ=60)
                           CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC                                                            >  SRR4302543.63986/1‑94 (MQ=60)
                            AGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACA                                                           >  SRR4302543.2061259/1‑94 (MQ=60)
                              GGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAA                                                         <  SRR4302543.7501229/94‑1 (MQ=60)
                              GGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAA                                                         <  SRR4302543.897369/94‑1 (MQ=60)
                                 GTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTC                                                      <  SRR4302543.2318274/94‑1 (MQ=60)
                                 GTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTC                                                      >  SRR4302543.5824974/1‑94 (MQ=60)
                                   GGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAT                                                    >  SRR4302543.5316096/1‑94 (MQ=60)
                                   GGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAT                                                    >  SRR4302543.5622739/1‑94 (MQ=60)
                                    GCTGGTACATATATGGCAAAAGCCCGAAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATT                                                   <  SRR4302543.3157275/94‑1 (MQ=60)
                                     CTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTA                                                  >  SRR4302543.7487292/1‑94 (MQ=60)
                                     CTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTA                                                  >  SRR4302543.2829207/1‑94 (MQ=60)
                                     CTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTA                                                  <  SRR4302543.1319137/94‑1 (MQ=60)
                                     CTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTA                                                  <  SRR4302543.452872/94‑1 (MQ=60)
                                     CTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTA                                                  <  SRR4302543.4145250/94‑1 (MQ=60)
                                     CTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GG‑‑CCTT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTA                                                  <  SRR4302543.7024835/94‑1 (MQ=60)
                                      TGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAT                                                 <  SRR4302543.2412020/94‑1 (MQ=60)
                                      TGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAT                                                 <  SRR4302543.1623988/94‑1 (MQ=60)
                                      TGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAT                                                 <  SRR4302543.2903782/94‑1 (MQ=60)
                                       GGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC                                                <  SRR4302543.6224282/94‑1 (MQ=60)
                                       GGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC                                                <  SRR4302543.7211803/94‑1 (MQ=60)
                                       GGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC                                                <  SRR4302543.5195371/94‑1 (MQ=60)
                                       GGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC                                                <  SRR4302543.1225801/94‑1 (MQ=60)
                                       GGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC                                                <  SRR4302543.5968994/94‑1 (MQ=60)
                                       GGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC                                                <  SRR4302543.7012565/94‑1 (MQ=60)
                                         TACATATATGGCAAAAGCCCGGAAACTCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGG                                              <  SRR4302543.1544573/94‑1 (MQ=60)
                                         TACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGG                                              <  SRR4302543.7717590/94‑1 (MQ=60)
                                         TACATATACGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGG                                              <  SRR4302543.5132843/94‑1 (MQ=60)
                                          ACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGG                                             <  SRR4302543.7842963/94‑1 (MQ=60)
                                          ACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGG                                             >  SRR4302543.7760385/1‑94 (MQ=60)
                                          ACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGG                                             >  SRR4302543.7748030/1‑94 (MQ=60)
                                           CATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG                                            <  SRR4302543.1111138/94‑1 (MQ=60)
                                           CATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG                                            <  SRR4302543.6437965/94‑1 (MQ=60)
                                           CATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGG                                            >  SRR4302543.2947722/1‑94 (MQ=60)
                                            ATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGA                                           >  SRR4302543.6192148/1‑94 (MQ=60)
                                            ATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGA                                           >  SRR4302543.3121105/1‑94 (MQ=60)
                                            ATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGA                                           >  SRR4302543.1728331/1‑94 (MQ=60)
                                             TATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAT                                          >  SRR4302543.114063/1‑94 (MQ=60)
                                             TATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAT                                          <  SRR4302543.7137388/94‑1 (MQ=60)
                                              ATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATG                                         >  SRR4302543.1113178/1‑94 (MQ=60)
                                              ATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATG                                         >  SRR4302543.3060956/1‑94 (MQ=60)
                                                ATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGT                                       >  SRR4302543.2254224/1‑94 (MQ=60)
                                                ATGGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGT                                       <  SRR4302543.5373082/94‑1 (MQ=60)
                                                  GGCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTA                                     >  SRR4302543.4612314/1‑94 (MQ=60)
                                                   GCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTAT                                    <  SRR4302543.7243908/94‑1 (MQ=60)
                                                   GCAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTAT                                    <  SRR4302543.1191650/94‑1 (MQ=60)
                                                    CAAAAGCCGGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATT                                   <  SRR4302543.5620075/94‑1 (MQ=60)
                                                    CAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATT                                   <  SRR4302543.4408275/94‑1 (MQ=60)
                                                    CAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATT                                   >  SRR4302543.1157008/1‑94 (MQ=60)
                                                    CAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATT                                   >  SRR4302543.7473321/1‑94 (MQ=60)
                                                    CAAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATT                                   >  SRR4302543.6912513/1‑94 (MQ=60)
                                                     AAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGTCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTT                                  >  SRR4302543.3955502/1‑94 (MQ=60)
                                                     AAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTT                                  >  SRR4302543.4074125/1‑94 (MQ=60)
                                                     AAAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTT                                  <  SRR4302543.3964687/94‑1 (MQ=60)
                                                      AAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTT                                 >  SRR4302543.6846229/1‑94 (MQ=60)
                                                      AAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTT                                 <  SRR4302543.2810858/94‑1 (MQ=60)
                                                      AAAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTT                                 <  SRR4302543.2583382/94‑1 (MQ=60)
                                                       AAGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTA                                >  SRR4302543.7982055/1‑94 (MQ=60)
                                                        AGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTAT                               <  SRR4302543.5072055/94‑1 (MQ=60)
                                                        AGCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTAT                               >  SRR4302543.5979362/1‑94 (MQ=60)
                                                         GCCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATT                              <  SRR4302543.126405/94‑1 (MQ=60)
                                                          CCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG                             >  SRR4302543.4895292/1‑94 (MQ=60)
                                                          CCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG                             >  SRR4302543.2590892/1‑94 (MQ=60)
                                                          CCCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG                             >  SRR4302543.1582685/1‑94 (MQ=60)
                                                           agcacggaaaatccgggctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTAT                               <  SRR4302543.255185/75‑1 (MQ=60)
                                                           CCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT                            >  SRR4302543.5573755/1‑94 (MQ=60)
                                                           CCGGAAAATCC‑GGGCT‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT                            >  SRR4302543.4172971/1‑94 (MQ=60)
                                                               cggaaaatccgggctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTC                           >  SRR4302543.1879538/16‑94 (MQ=60)
                                                               cggaaaatccgggctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTC                           >  SRR4302543.7470683/16‑94 (MQ=60)
                                                                ggaaaatccgggctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCA                          >  SRR4302543.5912111/15‑94 (MQ=60)
                                                                ggaaaatccgggctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCA                          >  SRR4302543.6671748/15‑94 (MQ=60)
                                                                  aaaatccgggctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAAT                        <  SRR4302543.135918/82‑1 (MQ=60)
                                                                  aaaatccgggctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAAT                        <  SRR4302543.5693999/82‑1 (MQ=60)
                                                                  aaaatccgggctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAAT                        <  SRR4302543.5676207/82‑1 (MQ=60)
                                                                    aatccgggctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTT                      <  SRR4302543.4714338/84‑1 (MQ=60)
                                                                     atccgggctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTA                     <  SRR4302543.927225/85‑1 (MQ=60)
                                                                     atccgggctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTA                     <  SRR4302543.4572968/85‑1 (MQ=60)
                                                                     atccgggctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTA                     >  SRR4302543.6361846/10‑94 (MQ=60)
                                                                       ccgggctT‑CGCAGGTCCCTCAAGGGGAGCAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATG                   >  SRR4302543.6350375/8‑94 (MQ=60)
                                                                       ccgggctT‑CGCAGGTCCCTCAAGGGGAGAAAGCTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATG                   <  SRR4302543.6094663/87‑1 (MQ=60)
                                                                       ccgggctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATG                   >  SRR4302543.6298085/8‑94 (MQ=60)
                                                                       ccgggctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATG                   <  SRR4302543.6609704/87‑1 (MQ=60)
                                                                       ccgggctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATG                   >  SRR4302543.7382602/8‑94 (MQ=60)
                                                                        cgggctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGA                  <  SRR4302543.4541667/88‑1 (MQ=60)
                                                                        cgggctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGA                  >  SRR4302543.1732957/7‑94 (MQ=60)
                                                                        cgggctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGA                  >  SRR4302543.1723134/7‑94 (MQ=60)
                                                                        cgggcgT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGA                  <  SRR4302543.5499512/88‑1 (MQ=60)
                                                                         gggctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAG                 <  SRR4302543.5125603/89‑1 (MQ=60)
                                                                         gggctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAG                 <  SRR4302543.7427612/89‑1 (MQ=60)
                                                                         gggctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAG                 >  SRR4302543.6415158/6‑94 (MQ=60)
                                                                          ggctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGC                <  SRR4302543.4423974/90‑1 (MQ=60)
                                                                           T‑‑T‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGAT             <  SRR4302543.7380634/94‑1 (MQ=60)
                                                                            ctT‑CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGA              <  SRR4302543.2243621/92‑1 (MQ=60)
                                                                                CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATAT           <  SRR4302543.2343167/94‑1 (MQ=60)
                                                                                CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATAT           <  SRR4302543.6474366/94‑1 (MQ=60)
                                                                                CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATAT           <  SRR4302543.6197515/94‑1 (MQ=60)
                                                                                CGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATAT           <  SRR4302543.88242/94‑1 (MQ=60)
                                                                                 GCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATG          <  SRR4302543.1772189/94‑1 (MQ=60)
                                                                                 GCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATG          <  SRR4302543.3875001/94‑1 (MQ=60)
                                                                                 GCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATG          >  SRR4302543.7239633/1‑94 (MQ=60)
                                                                                 GCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATG          <  SRR4302543.7765205/94‑1 (MQ=60)
                                                                                  CAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGG         >  SRR4302543.222953/1‑94 (MQ=60)
                                                                                  CAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGG         <  SRR4302543.4315119/94‑1 (MQ=60)
                                                                                  CAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGG         >  SRR4302543.7412870/1‑94 (MQ=60)
                                                                                   AGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGC        >  SRR4302543.5773142/1‑94 (MQ=60)
                                                                                   AGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGC        >  SRR4302543.246762/1‑94 (MQ=60)
                                                                                   AGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGC        >  SRR4302543.3921663/1‑94 (MQ=60)
                                                                                    GGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCT       >  SRR4302543.2118361/1‑94 (MQ=60)
                                                                                    GGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCA       <  SRR4302543.1499921/94‑1 (MQ=60)
                                                                                    GGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCA       >  SRR4302543.5107995/1‑94 (MQ=60)
                                                                                     gtcCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCAT      <  SRR4302543.2853380/91‑1 (MQ=60)
                                                                                     gtcCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCAT      <  SRR4302543.2890886/91‑1 (MQ=60)
                                                                                     gtcCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCAT      <  SRR4302543.3956761/91‑1 (MQ=60)
                                                                                      tcCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCATT     >  SRR4302543.5709213/3‑94 (MQ=60)
                                                                                      tcCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCATT     <  SRR4302543.3421694/92‑1 (MQ=60)
                                                                                      tcCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCATT     <  SRR4302543.6740826/92‑1 (MQ=60)
                                                                                      C‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCATTG    <  SRR4302543.5709968/94‑1 (MQ=60)
                                                                                      C‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCATTG    >  SRR4302543.2966397/1‑94 (MQ=60)
                                                                                      C‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCATTG    >  SRR4302543.533991/1‑94 (MQ=60)
                                                                                      C‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCATTG    >  SRR4302543.3680226/1‑94 (MQ=60)
                                                                                        CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCATTGA   <  SRR4302543.2554185/94‑1 (MQ=60)
                                                                                        CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCATTGA   <  SRR4302543.2049480/94‑1 (MQ=60)
                                                                                         CTGAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAGGGTTATTTTATTGTCAATTTATGAGCGATATGGCATTGAT  <  SRR4302543.801743/94‑1 (MQ=60)
                                                                                         CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCATTGAT  <  SRR4302543.801742/94‑1 (MQ=60)
                                                                                         CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCATTGAT  <  SRR4302543.1750002/94‑1 (MQ=60)
                                                                                         CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCATTGAT  >  SRR4302543.3267003/1‑94 (MQ=60)
                                                                                         CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCATTGAT  >  SRR4302543.7372684/1‑94 (MQ=60)
                                                                                         CTCAAGGAGAGAAAACTTAGGGCCTCTATGAGCTACAAAGTCATTATGTGGGTTGGTTATTTTATTGTCAATTTATGAGCGATATGGCATTGAT  <  SRR4302543.801744/94‑1 (MQ=60)
                                                                                         |                                                                                             
TCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑TG‑‑C‑‑T‑CGCAGGT‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCATTGAT  >  NC_000913/3957478‑3957653

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑