Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,001,717 +C coding (86/903 nt) rarD ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,001,7171.C100.0% 1217.4 / NA 387T29R (ACG→AGG) rarDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (188/199);  total (188/199)

Only 100 of 446 total aligned reads displayed.

TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑G‑TGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAAT  >  NC_000913/4001625‑4001809
                                                                                               |                                                                                            
tGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑g                                                                                               <  1:1561059/93‑1 (MQ=255)
 gCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑gc                                                                                              <  2:9002031/93‑2 (MQ=255)
 gCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑gc                                                                                              >  1:5323135/1‑92 (MQ=255)
 gCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑gc                                                                                              <  2:6551169/93‑2 (MQ=255)
 gCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAATA‑C‑gc                                                                                              >  1:8309601/1‑92 (MQ=255)
  cTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑gct                                                                                             <  1:9730714/93‑3 (MQ=255)
   tcatcaGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑gctg                                                                                            <  1:9509232/93‑4 (MQ=255)
      tcaGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGgcg                                                                                         >  2:5888111/1‑93 (MQ=255)
       caGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGgcgc                                                                                        <  2:5295275/93‑1 (MQ=255)
        aGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCt                                                                                       >  2:8722881/1‑93 (MQ=255)
         gCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCta                                                                                      <  1:8068102/93‑1 (MQ=255)
          caccacCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCtat                                                                                     >  1:9219809/1‑93 (MQ=255)
          caccacCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAAATTGAAGTA‑C‑GCTGGCGCtat                                                                                     >  2:1890105/1‑93 (MQ=255)
           accaccATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCtata                                                                                    <  2:5675382/93‑1 (MQ=255)
           accaccATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCtata                                                                                    >  2:7922249/1‑93 (MQ=255)
           accaccATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCtata                                                                                    >  2:4181691/1‑93 (MQ=255)
           accaccATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCtata                                                                                    <  1:1669352/93‑1 (MQ=255)
           accaccATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCtata                                                                                    >  1:6098288/1‑93 (MQ=255)
           accaccATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGCAATAAATCAAATTGAAAGA‑C‑GATGGCGCtata                                                                                    >  1:10004813/1‑93 (MQ=255)
            ccaccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATAc                                                                                   <  1:6021078/93‑1 (MQ=255)
            ccaccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGGA‑C‑GCTGGCGCTATAc                                                                                   >  2:8198527/1‑93 (MQ=255)
            ccaccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTCGAAGTA‑C‑GCTGGCGCTATAc                                                                                   <  2:7017374/93‑1 (MQ=255)
            ccaccaGAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATAc                                                                                   <  1:1215288/93‑1 (MQ=255)
             caccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCtataac                                                                                  >  2:3974453/1‑91 (MQ=255)
               ccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATAcccc                                                                                <  2:981177/93‑1 (MQ=255)
                 aTAAAGAAAAACGACCAGATCACCCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTTAAGTA‑C‑GCTGGCGCTATACCCCaa                                                                              <  2:7220375/93‑1 (MQ=255)
                   aaaGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCaaaa                                                                            >  1:424022/1‑92 (MQ=255)
                       aaaaaCGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCacataaaa                                                                        >  2:4464733/1‑93 (MQ=255)
                         aaaCGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCaaataaaata                                                                      >  1:8775750/1‑93 (MQ=255)
                          aaCGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAaataaaataa                                                                     <  1:4359015/93‑1 (MQ=255)
                            cGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGCGCACGTAGTAAATCAACTTGAAGTA‑C‑GCGGGCGCTATACCCCAAATAAAATAAGc                                                                   <  1:5737955/93‑1 (MQ=255)
                             gACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCAGGTAGGAAATCAACTTGAATTA‑CAC‑TGGCTCTATACACCAaataaaataaaag                                                                  >  1:2009258/1‑90 (MQ=255)
                             gACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCg                                                                  >  1:290855/1‑93 (MQ=255)
                              aCCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCgg                                                                 >  1:5894275/1‑93 (MQ=255)
                               ccAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTTGCGCTATACCCCAAATAAAATAAGCGGc                                                                >  2:4593638/1‑93 (MQ=255)
                               ccAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGc                                                                <  2:8289713/93‑1 (MQ=255)
                                cAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCa                                                               >  2:4885251/1‑93 (MQ=255)
                                 aGATCACGCGATGCGTCAGGATTTCATCGGCGTGCATGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATCCCCCAAATAAAATAAGCGGCaa                                                              <  1:5238681/93‑1 (MQ=255)
                                 aGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGGGCTATACCCCAAATAAAATAAGCGGCaa                                                              >  1:9977484/1‑93 (MQ=255)
                                 aGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCaa                                                              <  1:3206510/93‑1 (MQ=255)
                                 aGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCaa                                                              >  1:2151765/1‑93 (MQ=255)
                                 aGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCaa                                                              >  2:1092281/1‑93 (MQ=255)
                                  gATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCaaa                                                             >  1:145224/1‑92 (MQ=255)
                                  gATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAAATTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAag                                                             >  2:2548234/1‑93 (MQ=255)
                                   aTCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAaga                                                            <  2:9385827/93‑1 (MQ=255)
                                   aTCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAaga                                                            <  2:243603/93‑1 (MQ=255)
                                   aTCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAaga                                                            >  2:8066183/1‑93 (MQ=255)
                                      aCGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCg                                                         <  1:1932531/93‑1 (MQ=255)
                                        gcgATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAg                                                       <  2:3271008/93‑1 (MQ=255)
                                        gcgATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAg                                                       >  1:890952/1‑93 (MQ=255)
                                        gcgATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAAT‑AACTTTAAGGACC‑G‑TTGGGCTATAACCCAAATAAAAAAAACCGCGAGAACGAgg                                                      >  2:6131923/1‑92 (MQ=255)
                                         cgATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGt                                                      <  1:723307/93‑1 (MQ=255)
                                         cgATGCGTCAGGATTTAATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAga                                                      >  2:2184366/1‑92 (MQ=255)
                                           aTGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTaa                                                    >  2:22660/1‑93 (MQ=255)
                                           aTGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTaa                                                    >  1:5053143/1‑93 (MQ=255)
                                           aTGCGTCAGGATTTCATCGGCGGGCACGGAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTaa                                                    <  1:556028/93‑1 (MQ=255)
                                            tGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAAt                                                   <  1:7702115/93‑1 (MQ=255)
                                             gCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATa                                                  <  2:1213056/93‑1 (MQ=255)
                                             gCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATa                                                  <  2:6257125/93‑1 (MQ=255)
                                              cGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATAc                                                 <  1:6421224/93‑1 (MQ=255)
                                                tCAGGATTTCATCGGCGGGCTCGCAGTAAATCAACTTGAAGTA‑C‑GCCTGCGCTATACCCCTAAAAAAATAAGCTGCTAGAGCGAGGAATACGc                                               >  2:9264854/1‑93 (MQ=255)
                                                tCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGc                                               <  2:15796/93‑1 (MQ=255)
                                                tCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGc                                               >  2:7079535/1‑93 (MQ=255)
                                                tCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGc                                               <  2:3737298/93‑1 (MQ=255)
                                                  aGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑A‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGccc                                             >  1:4007498/1‑93 (MQ=255)
                                                   ggATTTCATCGGCGGGCCCGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGGAAGAGCGAGGAATAGGccgt                                            >  2:1777783/1‑91 (MQ=255)
                                                   ggATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCt                                            >  2:4349375/1‑93 (MQ=255)
                                                   ggATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCt                                            >  1:4669314/1‑93 (MQ=255)
                                                    gATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTg                                           >  2:884113/1‑93 (MQ=255)
                                                     aTTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGc                                          <  2:9089001/93‑1 (MQ=255)
                                                     aTTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGc                                          >  2:291922/1‑93 (MQ=255)
                                                     aTTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGc                                          >  2:1373953/1‑93 (MQ=255)
                                                       ttCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCcg                                        >  2:7936720/1‑93 (MQ=255)
                                                        tCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCcgc                                       <  2:96548/93‑1 (MQ=255)
                                                           tCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtt                                    <  1:6854728/93‑1 (MQ=255)
                                                           tCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtt                                    >  1:2602917/1‑93 (MQ=255)
                                                            cggcggGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgttt                                   <  1:9655462/93‑1 (MQ=255)
                                                             ggcggGCACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtttg                                  <  2:7623181/93‑1 (MQ=255)
                                                                   cACGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATAAGCCCTGCCGCGTTTGTTTTGc                            <  1:1849370/93‑1 (MQ=255)
                                                                    aCGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGca                           <  1:9152872/93‑1 (MQ=255)
                                                                    aCGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGca                           <  1:7132533/93‑1 (MQ=255)
                                                                     cGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcat                          >  2:6342110/1‑93 (MQ=255)
                                                                     cGTAGTAAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcat                          <  1:2364653/93‑1 (MQ=255)
                                                                      gtagtaAATCAACTTGAAGTA‑C‑GCTGGCGCTATCCCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatc                         <  2:6289524/93‑1 (MQ=255)
                                                                      gtagtaAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatc                         <  1:6278341/93‑1 (MQ=255)
                                                                      gtagtaAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatc                         <  1:54347/93‑1 (MQ=255)
                                                                          taAATCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatccatc                     >  1:7349227/1‑93 (MQ=255)
                                                                              tCAAGTTGAAGTA‑CTC‑TGGCGCTATACCGCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGa                 <  1:5724745/93‑1 (MQ=255)
                                                                              tCAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGa                 <  1:6671170/93‑1 (MQ=255)
                                                                               cAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGaa                <  1:3522289/93‑1 (MQ=255)
                                                                               cAACTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGaa                <  2:7403956/93‑1 (MQ=255)
                                                                                aaCTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAAt               >  1:8518309/1‑93 (MQ=255)
                                                                                 aCTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATa              >  2:8089816/1‑93 (MQ=255)
                                                                                 aCTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATa              >  2:8383167/1‑93 (MQ=255)
                                                                                 aCTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATa              <  2:3480055/93‑1 (MQ=255)
                                                                                 aCTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAACAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATa              <  2:2895390/93‑1 (MQ=255)
                                                                                  cTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATAc             <  2:4064470/93‑1 (MQ=255)
                                                                                  cTTGAAGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATAc             >  1:9424774/1‑93 (MQ=255)
                                                                                      aaGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCAt         >  1:3650492/1‑93 (MQ=255)
                                                                                       aGTA‑C‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCAtt        <  2:5491839/93‑1 (MQ=255)
                                                                                               |                                                                                            
TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTA‑C‑G‑TGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAAT  >  NC_000913/4001625‑4001809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 237 total aligned reads displayed.
ATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑G‑TGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATT  >  NC_000913/4001624‑4001810
                                                                                              |                                                                                              
ATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑G                                                                                                <  SRR4302540.7185462/94‑1 (MQ=60)
 TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑G‑C                                                                                              <  SRR4302540.1578199/94‑1 (MQ=60)
 TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑G‑C                                                                                              >  SRR4302540.234871/1‑94 (MQ=60)
 TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑G‑C                                                                                              <  SRR4302540.764819/94‑1 (MQ=60)
 TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAATAC‑G‑C                                                                                              >  SRR4302540.8406069/1‑94 (MQ=60)
   CTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑Gctg                                                                                             <  SRR4302540.9844977/94‑4 (MQ=60)
    TCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGG                                                                                            <  SRR4302540.9621876/94‑1 (MQ=60)
    TCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGG                                                                                            <  SRR4302540.9823725/94‑1 (MQ=60)
     CATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGC                                                                                           >  SRR4302540.7663390/1‑94 (MQ=60)
      ATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCG                                                                                          <  SRR4302540.6685058/94‑1 (MQ=60)
        CAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTTAAGTAC‑GCTGGCGCT                                                                                        >  SRR4302540.1459808/1‑94 (MQ=60)
        CAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCT                                                                                        <  SRR4302540.110510/94‑1 (MQ=60)
         AGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTA                                                                                       >  SRR4302540.9601494/1‑94 (MQ=60)
         AGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTA                                                                                       >  SRR4302540.1873279/1‑94 (MQ=60)
          GCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCCCGTAGTAAATTAAATTGAAGTAC‑GCTGGCGCTTT                                                                                      >  SRR4302540.3758599/1‑94 (MQ=60)
          GCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTAT                                                                                      <  SRR4302540.8161718/94‑1 (MQ=60)
          GCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTAT                                                                                      <  SRR4302540.2097029/94‑1 (MQ=60)
          GCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTAT                                                                                      >  SRR4302540.9330392/1‑94 (MQ=60)
           CACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATA                                                                                     >  SRR4302540.6166178/1‑94 (MQ=60)
           CACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATA                                                                                     <  SRR4302540.9580845/94‑1 (MQ=60)
           CACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGGAAATCAACTTGAAGTAC‑GCTTGCGCTATA                                                                                     >  SRR4302540.5382002/1‑94 (MQ=60)
           CACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGCAATAAATCAAATTGAAAGAC‑GATGGCGCTATA                                                                                     >  SRR4302540.10121343/1‑94 (MQ=60)
            ACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAATTAC‑GCTGGCGCTATAC                                                                                    <  SRR4302540.1130203/94‑1 (MQ=60)
            ACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATAC                                                                                    <  SRR4302540.1687517/94‑1 (MQ=60)
            ACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATAC                                                                                    <  SRR4302540.52493/94‑1 (MQ=60)
             CCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACC                                                                                   >  SRR4302540.1505103/1‑94 (MQ=60)
             CCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACC                                                                                   <  SRR4302540.6087864/94‑1 (MQ=60)
             CCACCATAAAGAAAAACGACCAGATCACGCGATGCGCCAGGATTTCATCGGCGGGCACGCAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACC                                                                                   >  SRR4302540.3246467/1‑94 (MQ=60)
              CACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCC                                                                                  <  SRR4302540.9374403/94‑1 (MQ=60)
               ACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCC                                                                                 >  SRR4302540.1261281/1‑94 (MQ=60)
               ACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCC                                                                                 >  SRR4302540.8020949/1‑94 (MQ=60)
                CCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCA                                                                                >  SRR4302540.1528879/1‑94 (MQ=60)
                CCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCA                                                                                >  SRR4302540.3655564/1‑94 (MQ=60)
                CCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCA                                                                                >  SRR4302540.3085473/1‑94 (MQ=60)
                 CATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGGAGGAAATCAACTTGAAGTAA‑GCTGGCGCTGAACCCCAA                                                                               >  SRR4302540.2924205/1‑94 (MQ=60)
                  ATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAA                                                                              >  SRR4302540.1519875/1‑94 (MQ=60)
                   TAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAAA                                                                             >  SRR4302540.428491/1‑94 (MQ=60)
                    AAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATA                                                                            <  SRR4302540.602297/94‑1 (MQ=60)
                    AAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATA                                                                            >  SRR4302540.5414659/1‑94 (MQ=60)
                     AAGAAAAACAACCAGATCACGCGATGCGTCAGGATTGCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAA                                                                           <  SRR4302540.8240006/94‑1 (MQ=60)
                      AGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAA                                                                          >  SRR4302540.5892115/1‑94 (MQ=60)
                        AAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAAA                                                                        >  SRR4302540.7674056/1‑94 (MQ=60)
                           AACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAG                                                                     <  SRR4302540.4406423/94‑1 (MQ=60)
                           AACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGAAA‑GCTGGCGCTATACCCCAAATACAATAAG                                                                     >  SRR4302540.9434269/1‑94 (MQ=60)
                             CGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCAGGTAGGAAATCAACTTGAATTACAC‑TGGCTCTATACACCAAATAAAATAAaag                                                                   >  SRR4302540.2030990/1‑91 (MQ=60)
                             CGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAAacatcg                                                                   >  SRR4302540.738487/1‑88 (MQ=60)
                             CGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCG                                                                   <  SRR4302540.6170864/94‑1 (MQ=60)
                             CGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCG                                                                   <  SRR4302540.762704/94‑1 (MQ=60)
                             CGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCG                                                                   <  SRR4302540.5801189/94‑1 (MQ=60)
                             CGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCG                                                                   <  SRR4302540.7258276/94‑1 (MQ=60)
                             CGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCG                                                                   >  SRR4302540.293728/1‑94 (MQ=60)
                             CGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCG                                                                   <  SRR4302540.2743344/94‑1 (MQ=60)
                             CGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCG                                                                   <  SRR4302540.552945/94‑1 (MQ=60)
                             CGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGCGCACGTAGTAAATCAACTTGAAGTAC‑GCGGGCGCTATACCCCAAATAAAATAAGCG                                                                   <  SRR4302540.5801190/94‑1 (MQ=60)
                              GACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGG                                                                  >  SRR4302540.5959374/1‑94 (MQ=60)
                              GACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAAAAAAATAAACGG                                                                  >  SRR4302540.738044/1‑94 (MQ=60)
                              GAACAGATCTCGCGATTCGTCAGGATTTCATCGGCGGGCATGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGG                                                                  <  SRR4302540.3660566/94‑1 (MQ=60)
                               ACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGGACGGAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAAAAAAATAAGAGGC                                                                 >  SRR4302540.4564727/1‑94 (MQ=60)
                               ACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAAATTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAACGGC                                                                 >  SRR4302540.7225479/1‑94 (MQ=60)
                               ACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATAAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGAGGC                                                                 >  SRR4302540.3149599/1‑94 (MQ=60)
                               ACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGGAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAcccga                                                                 >  SRR4302540.501452/1‑89 (MQ=60)
                                CCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCA                                                                >  SRR4302540.8482432/1‑94 (MQ=60)
                                CCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCA                                                                >  SRR4302540.9290055/1‑94 (MQ=60)
                                 CAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGGGCTATACCCCAAATAAAATAAGCGGCAA                                                               >  SRR4302540.10093833/1‑94 (MQ=60)
                                 CAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAA                                                               >  SRR4302540.6810653/1‑94 (MQ=60)
                                 CAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAA                                                               >  SRR4302540.4291302/1‑94 (MQ=60)
                                 CAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAA                                                               >  SRR4302540.9306469/1‑94 (MQ=60)
                                 CAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAA                                                               >  SRR4302540.924193/1‑94 (MQ=60)
                                 CAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAA                                                               >  SRR4302540.2174907/1‑94 (MQ=60)
                                  CGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAG                                                              <  SRR4302540.1750339/94‑1 (MQ=60)
                                  AGATCACGCGATGCGTCAGGATTTCATCGGCGTGCATGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATCCCCCAAATAAAATAAGCGGCAAG                                                              <  SRR4302540.5295832/94‑1 (MQ=60)
                                  AGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAG                                                              <  SRR4302540.5295833/94‑1 (MQ=60)
                                  AGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAG                                                              >  SRR4302540.6143287/1‑94 (MQ=60)
                                  AGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAG                                                              <  SRR4302540.4425629/94‑1 (MQ=60)
                                  AGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAG                                                              <  SRR4302540.27091/94‑1 (MQ=60)
                                  AGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAG                                                              <  SRR4302540.3241329/94‑1 (MQ=60)
                                   GATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGA                                                             >  SRR4302540.208664/1‑94 (MQ=60)
                                   GATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAACGGCAAGA                                                             >  SRR4302540.8122425/1‑94 (MQ=60)
                                    ATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTACATCAACTTCAAGTAC‑GCTGGTGCTATAGCCCAAATAAAATTATCGGCAAGAG                                                            >  SRR4302540.5428997/1‑94 (MQ=60)
                                    ATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAG                                                            <  SRR4302540.4109293/94‑1 (MQ=60)
                                    ATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAG                                                            <  SRR4302540.9749056/94‑1 (MQ=60)
                                       ACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGA                                                         <  SRR4302540.1953594/94‑1 (MQ=60)
                                       ACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATAACCCAAATAAAATAAGCCGCCAGAGCGA                                                         >  SRR4302540.9766161/1‑94 (MQ=60)
                                        CGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAG                                                        >  SRR4302540.900421/1‑94 (MQ=60)
                                        CGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAG                                                        <  SRR4302540.6147005/94‑1 (MQ=60)
                                         GCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGT                                                       <  SRR4302540.9782621/94‑1 (MQ=60)
                                         GCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGA                                                       >  SRR4302540.9950701/1‑94 (MQ=60)
                                          CGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTA                                                      <  SRR4302540.731060/94‑1 (MQ=60)
                                           GATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAA                                                     >  SRR4302540.5107770/1‑94 (MQ=60)
                                           GATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAA                                                     <  SRR4302540.2209353/94‑1 (MQ=60)
                                            ATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAAT                                                    >  SRR4302540.4226326/1‑94 (MQ=60)
                                            ATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAAT                                                    >  SRR4302540.544760/1‑94 (MQ=60)
                                            ATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAAT                                                    >  SRR4302540.7363832/1‑94 (MQ=60)
                                            ATGCGTCAGGATTTCATCGGCGGGCACGGAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAAT                                                    <  SRR4302540.562089/94‑1 (MQ=60)
                                             TGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATA                                                   <  SRR4302540.7790174/94‑1 (MQ=60)
                                             TGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATA                                                   >  SRR4302540.5693033/1‑94 (MQ=60)
                                              GCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATAC                                                  <  SRR4302540.1997156/94‑1 (MQ=60)
                                              GCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATAC                                                  >  SRR4302540.6012054/1‑94 (MQ=60)
                                              GCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATAC                                                  <  SRR4302540.9010232/94‑1 (MQ=60)
                                               CGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACG                                                 >  SRR4302540.5763760/1‑94 (MQ=60)
                                               CGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACG                                                 <  SRR4302540.6492690/94‑1 (MQ=60)
                                               CGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACG                                                 >  SRR4302540.6417028/1‑94 (MQ=60)
                                               CGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACG                                                 >  SRR4302540.5003212/1‑94 (MQ=60)
                                               CGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACG                                                 <  SRR4302540.6047638/94‑1 (MQ=60)
                                                GTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGC                                                >  SRR4302540.9467076/1‑94 (MQ=60)
                                                GTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGC                                                >  SRR4302540.1676666/1‑94 (MQ=60)
                                                GTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGGAATACGC                                                >  SRR4302540.8824740/1‑94 (MQ=60)
                                                GTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAAAGCGAGTAATACGC                                                >  SRR4302540.6261348/1‑94 (MQ=60)
                                                 TCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCCAATAAAATAAGCGGCAAGAGCGAGTAATACGCC                                               >  SRR4302540.2524692/1‑94 (MQ=60)
                                                 TCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCC                                               <  SRR4302540.5798655/94‑1 (MQ=60)
                                                 TCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAAAGCGAGAAATACACC                                               >  SRR4302540.9934588/1‑94 (MQ=60)
                                                  CAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCC                                              <  SRR4302540.146059/94‑1 (MQ=60)
                                                  CAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAA‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCC                                              >  SRR4302540.4050643/1‑94 (MQ=60)
                                                   AGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCT                                             >  SRR4302540.4719291/1‑94 (MQ=60)
                                                   AGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCT                                             <  SRR4302540.641081/94‑1 (MQ=60)
                                                   AGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCCGCAAGAGCGAGTAATACGCCCT                                             >  SRR4302540.5749690/1‑94 (MQ=60)
                                                   AGGATTTCATCGGCGGGCACGTAATAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCT                                             <  SRR4302540.3443865/94‑1 (MQ=60)
                                                    GGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTG                                            >  SRR4302540.8703987/1‑94 (MQ=60)
                                                    GGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTG                                            >  SRR4302540.8461031/1‑94 (MQ=60)
                                                    GGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTG                                            <  SRR4302540.9139468/94‑1 (MQ=60)
                                                     GATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC                                           >  SRR4302540.8810694/1‑94 (MQ=60)
                                                      ATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCC                                          >  SRR4302540.2404511/1‑94 (MQ=60)
                                                       TTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCG                                         >  SRR4302540.895487/1‑94 (MQ=60)
                                                       TTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAACACCCCCTGCCG                                         >  SRR4302540.1930223/1‑94 (MQ=60)
                                                         TCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCG                                       <  SRR4302540.9261438/94‑1 (MQ=60)
                                                           ATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTT                                     >  SRR4302540.2630992/1‑94 (MQ=60)
                                                           ATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGCT                                     >  SRR4302540.8704891/1‑94 (MQ=60)
                                                           ATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGCT                                     >  SRR4302540.699956/1‑94 (MQ=60)
                                                            TCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTT                                    <  SRR4302540.6930663/94‑1 (MQ=60)
                                                             CGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTG                                   <  SRR4302540.9769135/94‑1 (MQ=60)
                                                              GGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGT                                  >  SRR4302540.1887292/1‑94 (MQ=60)
                                                              GGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGT                                  >  SRR4302540.5742046/1‑94 (MQ=60)
                                                              GGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGGAATACGCCCTGCCGCGTTTGT                                  >  SRR4302540.5499047/1‑94 (MQ=60)
                                                               GCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACGCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTT                                 >  SRR4302540.5533529/1‑94 (MQ=60)
                                                                CGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTT                                >  SRR4302540.65782/1‑94 (MQ=60)
                                                                CGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTT                                <  SRR4302540.1743738/94‑1 (MQ=60)
                                                                CGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTT                                >  SRR4302540.9380161/1‑94 (MQ=60)
                                                                 GGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGGTTGTTTT                               >  SRR4302540.1718652/1‑94 (MQ=60)
                                                                  GGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTG                              <  SRR4302540.4311976/94‑1 (MQ=60)
                                                                   GCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGC                             >  SRR4302540.2596488/1‑94 (MQ=60)
                                                                    CACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCA                            <  SRR4302540.7047955/94‑1 (MQ=60)
                                                                    CACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCA                            <  SRR4302540.5280587/94‑1 (MQ=60)
                                                                    CACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATAAGCCCTGCCGCGTTTGTTTTGCA                            <  SRR4302540.1869651/94‑1 (MQ=60)
                                                                     ACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCAT                           >  SRR4302540.7351273/1‑94 (MQ=60)
                                                                     ACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCAT                           <  SRR4302540.9262765/94‑1 (MQ=60)
                                                                     ACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCAT                           <  SRR4302540.7211988/94‑1 (MQ=60)
                                                                     ACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCAT                           <  SRR4302540.4002378/94‑1 (MQ=60)
                                                                      CGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATC                          <  SRR4302540.2390118/94‑1 (MQ=60)
                                                                       GTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCC                         >  SRR4302540.9010078/1‑94 (MQ=60)
                                                                       GTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCC                         >  SRR4302540.1963962/1‑94 (MQ=60)
                                                                       GTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCC                         >  SRR4302540.8433748/1‑94 (MQ=60)
                                                                       GTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCC                         >  SRR4302540.4071051/1‑94 (MQ=60)
                                                                       GTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCC                         <  SRR4302540.6348196/94‑1 (MQ=60)
                                                                         AGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCAT                       >  SRR4302540.3308325/1‑94 (MQ=60)
                                                                         AGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCAT                       <  SRR4302540.8352389/94‑1 (MQ=60)
                                                                          GTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATC                      >  SRR4302540.7431218/1‑94 (MQ=60)
                                                                          GTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATC                      >  SRR4302540.4495185/1‑94 (MQ=60)
                                                                           TAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCG                     >  SRR4302540.5206183/1‑94 (MQ=60)
                                                                            AAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCGATCGG                    >  SRR4302540.2303608/1‑94 (MQ=60)
                                                                            AAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGG                    <  SRR4302540.6660480/94‑1 (MQ=60)
                                                                            AAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGG                    >  SRR4302540.7111729/1‑94 (MQ=60)
                                                                            AAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGG                    <  SRR4302540.4343191/94‑1 (MQ=60)
                                                                             AATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGG                   >  SRR4302540.9718892/1‑94 (MQ=60)
                                                                             AATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGG                   <  SRR4302540.5329886/94‑1 (MQ=60)
                                                                             AATCAACTTGAAGTAC‑GCTGGCGCTATAACCCAAATAAAATAAGCGGCAAGAGCGAGTAATCCGCCCTGCCGCGTTTGTTTTGCATCCATCGGG                   <  SRR4302540.5329885/94‑1 (MQ=60)
                                                                              ATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGA                  <  SRR4302540.6347575/94‑1 (MQ=60)
                                                                              ATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGA                  >  SRR4302540.4670766/1‑94 (MQ=60)
                                                                               TCAAGTTGAAGTACTC‑TGGCGCTATACCGCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAA                 <  SRR4302540.5787773/94‑1 (MQ=60)
                                                                               TCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAA                 <  SRR4302540.1591069/94‑1 (MQ=60)
                                                                               TCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAA                 <  SRR4302540.9559316/94‑1 (MQ=60)
                                                                               TCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAA                 <  SRR4302540.6744880/94‑1 (MQ=60)
                                                                               TCAACTTGAAGTAC‑GCTCGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGCTTGTTTTGCATCCATCGGGAA                 >  SRR4302540.701307/1‑94 (MQ=60)
                                                                               ACAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAA                 <  SRR4302540.5842722/94‑1 (MQ=60)
                                                                                CAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAAT                >  SRR4302540.5394580/1‑94 (MQ=60)
                                                                                CAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAAT                >  SRR4302540.8617303/1‑94 (MQ=60)
                                                                                CAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAAT                <  SRR4302540.3560678/94‑1 (MQ=60)
                                                                                CAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAAT                <  SRR4302540.4872562/94‑1 (MQ=60)
                                                                                 AACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATA               >  SRR4302540.1166454/1‑94 (MQ=60)
                                                                                   CTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACT             <  SRR4302540.2000432/94‑1 (MQ=60)
                                                                                   CTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACT             <  SRR4302540.8019527/94‑1 (MQ=60)
                                                                                    TTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTC            <  SRR4302540.1530189/94‑1 (MQ=60)
                                                                                    TTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTC            >  SRR4302540.6696182/1‑94 (MQ=60)
                                                                                    GTGAAGTAC‑GCTGGCGCTATGCCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTC            <  SRR4302540.6797829/94‑1 (MQ=60)
                                                                                      GAAGTAC‑GCTGTCGCTATACCCCAAATAAAATAATCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCAT          >  SRR4302540.5907687/1‑94 (MQ=60)
                                                                                      GAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCAT          >  SRR4302540.3690480/1‑94 (MQ=60)
                                                                                      GAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCAT          >  SRR4302540.3690481/1‑94 (MQ=60)
                                                                                      GAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCAT          <  SRR4302540.6373722/94‑1 (MQ=60)
                                                                                       AAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATT         >  SRR4302540.10040629/1‑94 (MQ=60)
                                                                                        AGTAC‑GCTGGCGCTATGCCCCAAATAAAATAAGCGGCAAGAGCGAGTAATCCGCCCTGCCCCGTTTGTTTTGCATCCATCGGGAATACTCATTT        <  SRR4302540.810767/94‑1 (MQ=60)
                                                                                        AGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTT        >  SRR4302540.5987499/1‑94 (MQ=60)
                                                                                        AGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTT        >  SRR4302540.980914/1‑94 (MQ=60)
                                                                                        AGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTT        >  SRR4302540.1237262/1‑94 (MQ=60)
                                                                                         GTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTT       >  SRR4302540.5726080/1‑94 (MQ=60)
                                                                                         GTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTT       <  SRR4302540.1324421/94‑1 (MQ=60)
                                                                                         GTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTT       <  SRR4302540.989302/94‑1 (MQ=60)
                                                                                         GTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTT       >  SRR4302540.5349812/1‑94 (MQ=60)
                                                                                          TAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT      <  SRR4302540.9911681/94‑1 (MQ=60)
                                                                                           AC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTA     >  SRR4302540.2936854/1‑94 (MQ=60)
                                                                                              C‑TGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATT  >  SRR4302540.2358207/1‑94 (MQ=60)
                                                                                              C‑TGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATT  <  SRR4302540.9216458/94‑1 (MQ=60)
                                                                                              |                                                                                              
ATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑G‑TGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATT  >  NC_000913/4001624‑4001810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑