Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1061	294.1	15065038	98.6%	14854127	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC	NC_000913	4,099,309	(G)_7→10	coding (48/993 nt)	kdgT →	2‑keto‑3‑deoxy‑D‑gluconate transport system

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4099302	37 (0.140)	173 (0.610) +GGG	94/164	2.0	82.1%	coding (41/993 nt)	kdgT	2‑keto‑3‑deoxy‑D‑gluconate transport system
*	?	NC_000913	4099303 =	38 (0.130)	173 (0.610) +GGG	94/164	2.0	82.1%	coding (42/993 nt)	kdgT	2‑keto‑3‑deoxy‑D‑gluconate transport system

Only 100 of 191 total aligned reads displayed.

CTGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4099211‑4099302

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTGGATCATTCACCAACG  >  NC_000913/4099303‑4099394

|||

CTGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCG                                                                                                 >  1:2690641/1‑93

 TGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG                                                                                                >  2:956748/1‑93

 TGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG                                                                                                >  2:6401664/1‑93

 TGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG                                                                                                <  2:5992337/93‑1

  GATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGG                                                                                               >  2:6818980/1‑93

   ATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGG                                                                                              <  2:7090338/93‑1

   ATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGG                                                                                              <  2:2678894/93‑1

     GCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGG                                                                                            <  1:2195414/93‑1

     GCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGG                                                                                            >  2:4097414/1‑93

     GCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGG                                                                                            >  1:5581635/1‑93

     GCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGG                                                                                            >  1:3384618/1‑93

      CTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGG                                                                                           <  1:5320905/93‑1

         CATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGGGa                                                                                        >  1:3277218/1‑92

         CATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGGGa                                                                                        >  1:4164826/1‑92

           TTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGGGGAT                                                                                      >  2:2243036/1‑93

             GAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGAT                                                                                   >  1:1225751/1‑93

              AGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATG                                                                                  >  2:106735/1‑93

               GGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGGGGATGATG                                                                                  >  2:6632238/1‑93

                GAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCT                                                                                >  1:3766993/1‑93

                GAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCT                                                                                >  1:992253/1‑93

                GAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCT                                                                                <  2:7215698/93‑1

                        CATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGC                                                                        <  2:838479/93‑1

                          TCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTA                                                                      >  1:1792132/1‑93

                          TCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTA                                                                      >  1:2972292/1‑93

                          TCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTA                                                                      >  1:2868896/1‑93

                           CAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTAT                                                                     >  2:5664084/1‑93

                           CAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTAT                                                                     >  1:1384419/1‑93

                              CCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCC                                                                  >  2:1099230/1‑93

                              CCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCC                                                                  >  2:6969596/1‑93

                               CCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCT                                                                 >  2:689900/1‑93

                               CCTAAAAAATATGCCGACAGGTGATGGAAATGCAGAAAAAACGCTCAATTGAGAAAA‑CCCCGGGGGGGGGATGATGCTCGTCCCGCTATTCCT                                                                 <  1:1934570/93‑1

                                CTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGCGGATGATGCTCGTCCCGCTATTCCTT                                                                >  1:2428304/1‑93

                                    AAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCG                                                            >  2:6435619/1‑93

                                    AAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCG                                                            >  2:6855064/1‑93

                                     AAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGC                                                           >  2:1764647/1‑93

                                      AATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGTTGATGCTCGTCCCGCTATTCCTTGGCGCA                                                          >  1:903060/1‑93

                                        TATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACT                                                        <  2:4535740/93‑1

                                        TATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACT                                                        >  1:3946684/1‑93

                                          TGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGT                                                      >  2:7333540/1‑93

                                            CCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGC                                                    >  2:392796/1‑93

                                             CGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAA‑CCCCGGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCC                                                   <  1:4458894/93‑1

                                              GACAGGTGATGGAAATGCAGAAAAAACGCTCGATTGA‑AAAAACCCCGGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCA                                                  <  1:5983152/93‑1

                                               ACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCAC                                                 >  2:4319771/1‑93

                                                 AGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACAC                                               >  2:7133401/1‑93

                                                 AGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACAC                                               >  2:3075035/1‑93

                                                  GGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGCTGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACC                                              >  2:4376128/1‑93

                                                   GTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCT                                             >  2:4141356/1‑93

                                                    TGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTT                                            <  2:2102785/93‑1

                                                     GATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTC                                           <  2:7400703/93‑1

                                                     GATGAAAATGCAAATAAAACGCTCGATTGA‑AAAAACCCCGGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTC                                           <  2:6701187/93‑1

                                                       TGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTC                                         >  2:692001/1‑93

                                                       TGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTC                                         >  1:6839078/1‑93

                                                       TGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTC                                         <  2:2241236/93‑1

                                                        GGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCG                                        >  2:4621848/1‑93

                                                        GGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCG                                        >  1:4353975/1‑93

                                                         GAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGC                                       >  2:2899506/1‑93

                                                            ATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGG                                    >  1:3547014/1‑93

                                                            ATGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGG                                    >  1:6241234/1‑93

                                                             TGCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGG                                   >  1:6761382/1‑93

                                                              GCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG                                  <  2:1793422/93‑1

                                                              GCAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG                                  >  2:4778461/1‑93

                                                               CAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑G                                >  2:5659060/1‑93

                                                               CAGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑G                                <  1:6942432/93‑1

                                                                AGATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GC                               >  1:2720198/1‑93

                                                                 GATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCG                              <  1:4924619/93‑1

                                                                  ATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGG                             >  2:6107862/1‑93

                                                                  ATAAAACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGG                             <  1:3408136/93‑1

                                                                  ATAAAACGCTCGATGGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTGCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGG                             <  2:381919/93‑1

                                                                       ACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAA                        >  2:6926880/1‑93

                                                                       ACGCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAA                        >  1:1733011/1‑93

                                                                       ACGCTCGATTGAAAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAA                        <  1:5631162/93‑1

                                                                         GCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATA                      >  1:62921/1‑93

                                                                         GCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATA                      >  2:5088417/1‑93

                                                                         GCTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTAGCTGGGGAGTGGGGAAAa                       >  2:4066941/1‑92

                                                                          CTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATAa                     >  1:7337567/1‑92

                                                                          CTCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCACGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGCAATAT                     >  1:6222521/1‑93

                                                                           TCGATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATT                    >  1:47961/1‑93

                                                                             GATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTT                  >  2:2746614/1‑93

                                                                              ATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTG                 <  1:2249364/93‑1

                                                                              ATTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTG                 >  1:4187792/1‑93

                                                                               TTGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTGG                >  1:7386982/1‑93

                                                                               TTGAG‑AAATCCCC‑GGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTGGA               <  2:2842549/93‑1

                                                                                TGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTGGA               <  1:1184845/93‑1

                                                                                TGAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTGGA               >  2:7360824/1‑93

                                                                                 GAGAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTGGAT              >  2:7008495/1‑93

                                                                                  aaAAAACCCCGGGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTGGAT              <  1:5107496/91‑1

                                                                                   aAAAACCCCCGGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTGGATC             <  1:5154570/92‑1

                                                                                   GAAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTGGATCA            >  2:3288937/1‑93

                                                                                    AAACTCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTGGATCAT           <  2:5532892/93‑1

                                                                                    AAAATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTGGATCAT           >  1:4783063/1‑93

                                                                                      AATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTGGATCATTC         >  1:5829171/1‑93

                                                                                       ATCCC‑GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTGGATCATTCA        <  1:7296881/93‑1

                                                                                        aCCCCGGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTGGATCATTCA        <  1:6429043/92‑1

                                                                                        aCCCCGGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTGGATCATTCA        <  2:356040/92‑1

                                                                                         tcccGGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTGGATCATTCAC       >  1:3482612/5‑93

                                                                                          cccGGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTGGATCATTCACC      <  1:5545496/90‑1

                                                                                             GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTGGATCATTCACCAAC   <  1:577153/93‑1

                                                                                             GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTGGATCATTCACCAAC   >  2:1235453/1‑93

                                                                                             GGGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTGGATCATTCACCAAC   <  2:1480542/93‑1

                                                                                              GGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTGGATCATTCACCAACG  >  2:5374910/1‑93

|||

CTGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4099211‑4099302

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG‑GCGGGGAAATATTTTGGATCATTCACCAACG  >  NC_000913/4099303‑4099394

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑‑‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCACCAACGGGATGATT  >  NC_000913/4099216‑4099402

GCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑‑‑G‑‑GGGG‑‑GG                                                                                               <  SRR4302542.2214320/94‑1 (MQ=60)

 CTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑‑‑G‑‑GGGG‑‑GGG                                                                                              >  SRR4302542.6284572/1‑94 (MQ=60)

 CTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑‑‑G‑‑GGGG‑‑GGG                                                                                              <  SRR4302542.5372592/94‑1 (MQ=60)

  TCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑‑‑G‑‑GGGG‑‑GGAT                                                                                             <  SRR4302542.611097/94‑1 (MQ=60)

   CCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑‑‑G‑‑GGGG‑‑GGgga                                                                                            >  SRR4302542.4205894/1‑91 (MQ=60)

   CCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑‑‑G‑‑GGGG‑‑GGgga                                                                                            >  SRR4302542.3313064/1‑91 (MQ=60)

   CCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑‑‑G‑‑GGGG‑‑GGgga                                                                                            >  SRR4302542.3308140/1‑91 (MQ=60)

     ATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑‑‑G‑‑GGGG‑‑GGggatg                                                                                          >  SRR4302542.1659827/1‑89 (MQ=60)

      TTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑‑‑GGTGGGG‑‑GGATGA                                                                                           <  SRR4302542.5173652/94‑1 (MQ=60)

      TTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑‑‑G‑‑GGGG‑‑GGATGATG                                                                                         <  SRR4302542.4508007/94‑1 (MQ=60)

      TTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑‑‑G‑‑GGGG‑‑GGATGATG                                                                                         >  SRR4302542.7371226/1‑94 (MQ=60)

      TTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGGGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑‑‑G‑‑GGGG‑‑GGATGATG                                                                                         >  SRR4302542.3524306/1‑94 (MQ=60)

       TGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGAT                                                                                          >  SRR4302542.1236296/1‑94 (MQ=60)

          GGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCT                                                                                       >  SRR4302542.1000800/1‑94 (MQ=60)

          GGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCT                                                                                       >  SRR4302542.3804252/1‑94 (MQ=60)

          GGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCT                                                                                       >  SRR4302542.6472588/1‑94 (MQ=60)

            AATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCG                                                                                     >  SRR4302542.5020872/1‑94 (MQ=60)

            AATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCG‑‑G‑‑GGGG‑‑GGATGATGCTCGT                                                                                    >  SRR4302542.6048144/1‑94 (MQ=60)

              TTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGG‑‑GGGG‑‑GGATGATGCTCGT                                                                                    <  SRR4302542.2376694/94‑1 (MQ=60)

                    ATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGG‑‑GGGG‑‑GGATGATGCTCGTCCCGCT                                                                              >  SRR4302542.2730964/1‑94 (MQ=60)

                    ATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTA                                                                             >  SRR4302542.1807681/1‑94 (MQ=60)

                    ATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTA                                                                             >  SRR4302542.3000759/1‑94 (MQ=60)

                    ATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTA                                                                             >  SRR4302542.2896456/1‑94 (MQ=60)

                    ATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTA                                                                             >  SRR4302542.5299438/1‑94 (MQ=60)

                     TCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTAT                                                                            >  SRR4302542.1396379/1‑94 (MQ=60)

                        GCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑‑‑G‑‑GGGG‑‑GGggggggttcccggtcccccttttc                                                                       >  SRR4302542.4177079/1‑70 (MQ=60)

                          CCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑‑‑G‑‑GGGGGCGGATGATGCTCGTCCCGCTATTCCTT                                                                       >  SRR4302542.2451910/1‑94 (MQ=60)

                          CCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑‑‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGG                                                                     >  SRR4302542.7436526/1‑94 (MQ=60)

                          CCTAAAAAATATGCCGACAGGTGATGGAAATGCAGAAAAAACGCTCAATTGAGAAAACCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTT                                                                       <  SRR4302542.1951277/94‑1 (MQ=60)

                           CTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTG                                                                      >  SRR4302542.4328012/1‑94 (MQ=60)

                            TTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAACCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGG                                                                     <  SRR4302542.3710216/94‑1 (MQ=60)

                             aaaaaaatgcgcgggggggaaaaaaaaaaaaaaaaaaacccaaaaaaaaaaaaccccccggG‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGG                                                                     <  SRR4302542.2492601/33‑1 (MQ=60)

                             aaaaaaaggggccgaggggtgatgaaaaggaaaaaaaacccctagataaaaaaaaccccggG‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGG                                                                     <  SRR4302542.229482/33‑1 (MQ=60)

                             TAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCG‑‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCG                                                                   >  SRR4302542.3045720/1‑94 (MQ=60)

                                AAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGTTGATGCTCGTCCCGCTATTCCTTGGCGCA                                                                 >  SRR4302542.910868/1‑94 (MQ=60)

                                AAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCA                                                                 >  SRR4302542.5543714/1‑94 (MQ=60)

                                 AATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCAC                                                                >  SRR4302542.4034097/1‑94 (MQ=60)

                                  NNATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACT                                                               <  SRR4302542.3435698/94‑1 (MQ=60)

                                  ATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACT                                                               >  SRR4302542.3985655/1‑94 (MQ=60)

                                   TATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTG                                                              <  SRR4302542.4965574/94‑1 (MQ=60)

                                     ggggagaggggaaaaaaaaaaaaaaaaaaagccaaaaaaaaaaaaacccccggG‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGT                                                             <  SRR4302542.3834985/41‑1 (MQ=60)

                                      cccgaagaggaagaaaaaggaaaaaaaaaaccccgttgaaaaaaacccccggG‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTG                                                            <  SRR4302542.6414656/42‑1 (MQ=60)

                                      GCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGC                                                           >  SRR4302542.3128391/1‑94 (MQ=60)

                                        ccgaagggtaatgaaaaggaaaaaaaaccgctcgattaaaaaaaccccggG‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCC                                                          <  SRR4302542.4103626/44‑1 (MQ=60)

                                        CGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAACCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCA                                                         <  SRR4302542.4502635/94‑1 (MQ=60)

                                         GACAGGTGATGGAAATGCAGAAAAAACGCTCGATTGAAAAAACCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCAC                                                        <  SRR4302542.6041107/94‑1 (MQ=60)

                                          gaggggtgagaaaaagacaaaaaaagcgctaaattgaaaaacccccggG‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCAC                                                        <  SRR4302542.3878625/46‑1 (MQ=60)

                                           agggggaaggaaaagaaaaaaaaaacgctggatagaaaaaaccccggG‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACA                                                       <  SRR4302542.6605256/47‑1 (MQ=60)

                                            AGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGCTGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACC                                                     >  SRR4302542.3528489/1‑94 (MQ=60)

                                            AGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACC                                                     >  SRR4302542.4209562/1‑94 (MQ=60)

                                            AGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACC                                                     >  SRR4302542.7377033/1‑94 (MQ=60)

                                             GGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCT                                                    >  SRR4302542.6739334/1‑94 (MQ=60)

                                             GGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑‑‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTC                                                  <  SRR4302542.6411204/94‑1 (MQ=60)

                                                gaaaaaaaaaaaaaaaaaacggtagaaaaaaaaaccccccggG‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTC                                                  <  SRR4302542.5141750/52‑1 (MQ=60)

                                                 ATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTC                                                >  SRR4302542.6906274/1‑94 (MQ=60)

                                                  TGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCG                                               >  SRR4302542.4396749/1‑94 (MQ=60)

                                                    AAAATGCAGATAAAACGCTCGATTGAGAAAATCCCG‑‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCG                                            <  SRR4302542.1891180/94‑1 (MQ=60)

                                                      AATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGG                                           >  SRR4302542.3580176/1‑94 (MQ=60)

                                                      AATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGG                                           >  SRR4302542.5683081/1‑94 (MQ=60)

                                                      AATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGG                                           >  SRR4302542.6302724/1‑94 (MQ=60)

                                                      AATGCAGATAAAACGCTCGATTGAGAAAATCCC‑‑‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGG                                         <  SRR4302542.126281/94‑1 (MQ=60)

                                                       ATGCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGG                                          >  SRR4302542.6827889/1‑94 (MQ=60)

                                                         GCAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCCCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGG                                        <  SRR4302542.6273351/94‑1 (MQ=60)

                                                         GCAGAAAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGG                                        <  SRR4302542.1960630/94‑1 (MQ=60)

                                                          gaaaaaaaagcgttagatagaaaaaaccccggG‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGG                                        <  SRR4302542.2838502/62‑1 (MQ=60)

                                                          gaaaaaaaacggttgagtgaaaaaaaccccggG‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGG                                        <  SRR4302542.6828522/62‑1 (MQ=60)

                                                          aaaaaaaaaccgcttgataaaaaaacccccggG‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGG                                        <  SRR4302542.6550000/62‑1 (MQ=60)

                                                          CAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGC                                       >  SRR4302542.4515161/1‑94 (MQ=60)

                                                          CAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGC                                       <  SRR4302542.7010644/94‑1 (MQ=60)

                                                          CAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGC                                       >  SRR4302542.3477647/1‑94 (MQ=60)

                                                          CAGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGC                                       >  SRR4302542.2746426/1‑94 (MQ=60)

                                                           AGATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCG                                      >  SRR4302542.5764338/1‑94 (MQ=60)

                                                           AGATAAAACGCTCGATTGAGAAAATCCC‑‑‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGG                                    <  SRR4302542.2773581/94‑1 (MQ=60)

                                                            GATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGG                                     <  SRR4302542.4972489/94‑1 (MQ=60)

                                                             ATAAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGG                                    <  SRR4302542.3440082/94‑1 (MQ=60)

                                                              TAAAACGCTCGATTGAGAAAATCCC‑‑‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAA                                 >  SRR4302542.3455897/1‑94 (MQ=60)

                                                               aaacccgcgagagaaaaaaacccccggG‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGG                                   <  SRR4302542.1530693/67‑1 (MQ=60)

                                                               aaaaagccctaaagaaaaaaacccccgG‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGG                                   <  SRR4302542.1414071/67‑1 (MQ=60)

                                                               AAAACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGA                                  <  SRR4302542.1835657/94‑1 (MQ=60)

                                                                 aaccgtgagaaagaaaaacccccggG‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAA                                 <  SRR4302542.6378602/69‑1 (MQ=60)

                                                                 AACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAA                                >  SRR4302542.1748051/1‑94 (MQ=60)

                                                                 AACGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAA                                >  SRR4302542.2219173/1‑94 (MQ=60)

                                                                 AACGCTCGATTGAGAAAATCCCG‑‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAAT                               <  SRR4302542.7091932/94‑1 (MQ=60)

                                                                  ACGCTCGATTGAAAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAAT                               <  SRR4302542.5685838/94‑1 (MQ=60)

                                                                   CGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGGAATA                              >  SRR4302542.6341256/1‑94 (MQ=60)

                                                                   CGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATA                              >  SRR4302542.3935454/1‑94 (MQ=60)

                                                                   CGCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATA                              >  SRR4302542.63432/1‑94 (MQ=60)

                                                                    GCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATAA                             >  SRR4302542.7409441/1‑94 (MQ=60)

                                                                    GCTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCACGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGCAATAT                             >  SRR4302542.6283803/1‑94 (MQ=60)

                                                                     tctaaatggaaaaaccccgggG‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATAT                             <  SRR4302542.148193/73‑1 (MQ=60)

                                                                     CTCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATT                            >  SRR4302542.48359/1‑94 (MQ=60)

                                                                      TCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTT                           <  SRR4302542.5635590/94‑1 (MQ=60)

                                                                      TCGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTT                           >  SRR4302542.6008967/1‑94 (MQ=60)

                                                                      TCGATTGAGAAAATCCCG‑‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTT                          >  SRR4302542.1786655/1‑94 (MQ=60)

                                                                       CGATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTNGTNNNGNNATTNCNTGGNNCANTGNGCNANNCCTTCTCGCCnnggncngnnnnanannnn                          >  SRR4302542.4319224/1‑75 (MQ=30)

                                                                        GATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTG                         >  SRR4302542.4229090/1‑94 (MQ=60)

                                                                         ATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGG                        >  SRR4302542.7459294/1‑94 (MQ=60)

                                                                         ATTGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGG                        <  SRR4302542.2268707/94‑1 (MQ=60)

                                                                           TGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGAT                      <  SRR4302542.1195065/94‑1 (MQ=60)

                                                                           TGAGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGAT                      >  SRR4302542.1797247/1‑94 (MQ=60)

                                                                             aaaaaaccccgggG‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATC                     <  SRR4302542.5157111/81‑1 (MQ=60)

                                                                             AGAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCA                    <  SRR4302542.7335824/94‑1 (MQ=60)

                                                                              aaaaacccccggG‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCA                    <  SRR4302542.5204665/82‑1 (MQ=60)

                                                                              GAAAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCAT                   >  SRR4302542.4829683/1‑94 (MQ=60)

                                                                               aaaccccccggG‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCAT                   <  SRR4302542.2609262/83‑1 (MQ=60)

                                                                                AAATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTC                 >  SRR4302542.5885745/1‑94 (MQ=60)

                                                                                 AATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCA                >  SRR4302542.696831/1‑94 (MQ=60)

                                                                                  ATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCAC               >  SRR4302542.7536623/1‑94 (MQ=60)

                                                                                  ATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCAC               >  SRR4302542.3515195/1‑94 (MQ=60)

                                                                                  ATCCCGG‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCAC               <  SRR4302542.7368387/94‑1 (MQ=60)

                                                                                   accccggG‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCAC               <  SRR4302542.6492382/87‑1 (MQ=60)

                                                                                    CCCG‑‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCACCAA            <  SRR4302542.4829858/94‑1 (MQ=60)

                                                                                     cccggG‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCACCA             <  SRR4302542.5599385/89‑1 (MQ=60)

                                                                                        ggG‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCACCAACG          >  SRR4302542.930562/3‑94 (MQ=60)

                                                                                        ggG‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCACCAACG          <  SRR4302542.582145/92‑1 (MQ=60)

                                                                                          G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCACCAACGGG        <  SRR4302542.5196451/94‑1 (MQ=60)

                                                                                             GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGGAATATTTTGGATCATTCACCAACGGGA       >  SRR4302542.1370546/1‑94 (MQ=60)

                                                                                              GGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCACCAACGGGAT      <  SRR4302542.2920817/94‑1 (MQ=60)

                                                                                              GGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCACCAACGGGAT      <  SRR4302542.3504812/94‑1 (MQ=60)

                                                                                               GG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCACCAACGGGATG     <  SRR4302542.6286129/94‑1 (MQ=60)

                                                                                                G‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCACCAACGGGATGA    >  SRR4302542.2655291/1‑94 (MQ=60)

                                                                                                   GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCACCAACGGGATGAT   <  SRR4302542.831270/94‑1 (MQ=60)

                                                                                                    GATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCACCAACGGGATGATT  >  SRR4302542.2947340/1‑94 (MQ=60)

                                                                                                    GATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCACCAACGGGATGATT  <  SRR4302542.2821204/94‑1 (MQ=60)

                                                                                                    GATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCACCAACGGGATGATT  <  SRR4302542.2667920/94‑1 (MQ=60)

GCTCCATTGAGGAATTACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCC‑‑‑G‑‑GGGG‑‑GGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCACCAACGGGATGATT  >  NC_000913/4099216‑4099402

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`