Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	744	338.8	17650688	97.8%	17262372	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,210,786	A→G	intergenic (+384/+117)	mcrA → / ← ycgW	McrA/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,210,786	0	A	G	99.6%	806.7 / NA	236	intergenic (+384/+117)	mcrA/ycgW	McrA/hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (108/126); total (109/127)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 247 total aligned reads displayed.

GCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGC  >  NC_000913/1210696‑1210875

gcAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGatcgtc                                                                                         >  1:3821622/1‑93 (MQ=255)

 caatcaatGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGAtcgtcg                                                                                        >  2:8424247/1‑93 (MQ=255)

  aatcaatGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGa                                                                                       >  1:7736337/1‑93 (MQ=255)

  aatcaatGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGa                                                                                       >  1:2192136/1‑93 (MQ=255)

    tcaatGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGaaa                                                                                     <  1:1373626/93‑1 (MQ=255)

     caatGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGaaaa                                                                                    <  2:6400584/93‑1 (MQ=255)

     caatGCCAAGACCATAACTTATGACTTCGACCGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGaaaa                                                                                    <  2:6645526/93‑1 (MQ=255)

       atGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACa                                                                                  <  1:2699101/93‑1 (MQ=255)

       atGCCAAGACCGTAACTTATGACTTCGAACGTCGGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACa                                                                                  <  1:8486275/93‑1 (MQ=255)

        tGCCAAGACCGTAACTTATGCCTTCTAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACAt                                                                                 <  2:3647742/93‑1 (MQ=255)

          ccAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATga                                                                               >  1:1156461/1‑92 (MQ=255)

          ccAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGt                                                                               <  2:2226696/93‑1 (MQ=255)

           cAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTa                                                                              <  1:8441298/93‑1 (MQ=255)

            aaGACCGTAACTTATTACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTaa                                                                             <  1:7348412/93‑1 (MQ=255)

              gACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTTAtc                                                                           <  2:8626175/93‑1 (MQ=255)

              gACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAAtc                                                                           >  1:1024194/1‑93 (MQ=255)

              aaCCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAAtc                                                                           <  2:6441164/92‑1 (MQ=255)

                acGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAAtctc                                                                         <  1:5714099/92‑1 (MQ=255)

                   tAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTcc                                                                      >  1:1815314/1‑93 (MQ=255)

                    aaCTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCa                                                                     >  2:2045108/1‑93 (MQ=255)

                     aCTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCAt                                                                    >  1:8730385/1‑93 (MQ=255)

                     aCTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCAt                                                                    >  1:4383270/1‑93 (MQ=255)

                     aCTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCAt                                                                    >  2:3556710/1‑93 (MQ=255)

                      cTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCAtg                                                                   <  2:2934909/93‑1 (MQ=255)

                       ttATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCAtgt                                                                  >  2:7734145/1‑93 (MQ=255)

                        tATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATCTAATCTCTCCAtgtg                                                                 <  2:8709559/93‑1 (MQ=255)

                          tGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGtt                                                               >  2:8392784/1‑93 (MQ=255)

                          tGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGtt                                                               <  1:4026885/93‑1 (MQ=255)

                             cTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTaaa                                                            >  2:1363558/1‑93 (MQ=255)

                              ttCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAat                                                           >  2:4071243/1‑93 (MQ=255)

                              ttCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAat                                                           <  1:5777766/93‑1 (MQ=255)

                                 gAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATAtt                                                        >  2:1888227/1‑93 (MQ=255)

                                 gAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATAtt                                                        >  1:1197402/1‑93 (MQ=255)

                                 gAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATAtt                                                        >  1:744941/1‑93 (MQ=255)

                                 gAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATAtt                                                        >  1:7295118/1‑93 (MQ=255)

                                  aaCGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTg                                                       <  1:3988943/93‑1 (MQ=255)

                                  aaCGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTg                                                       <  2:6042128/93‑1 (MQ=255)

                                   aCGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGa                                                      >  2:7866628/1‑93 (MQ=255)

                                   aCGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGa                                                      >  1:93618/1‑93 (MQ=255)

                                    cGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGaa                                                     >  1:6905702/1‑93 (MQ=255)

                                    cGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGaa                                                     <  1:811524/93‑1 (MQ=255)

                                    cGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGaa                                                     >  1:3655718/1‑93 (MQ=255)

                                     gTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTTaaa                                                    >  2:309814/1‑93 (MQ=255)

                                     gTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGaaa                                                    <  2:7566213/93‑1 (MQ=255)

                                     gTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGaaa                                                    <  2:2105482/93‑1 (MQ=255)

                                      tCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAAc                                                   >  2:8600400/1‑93 (MQ=255)

                                      tCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAAc                                                   <  2:1542911/93‑1 (MQ=255)

                                         gATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACggg                                                <  2:6248213/93‑1 (MQ=255)

                                          aTGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGc                                               <  2:116766/93‑1 (MQ=255)

                                            ggAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGt                                             >  2:3714743/1‑93 (MQ=255)

                                              aaGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGtat                                           >  2:4944790/1‑93 (MQ=255)

                                              aaGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGtat                                           >  1:3012882/1‑93 (MQ=255)

                                               aGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGtata                                          <  2:5242641/93‑1 (MQ=255)

                                               aGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGtata                                          >  1:2039953/1‑93 (MQ=255)

                                                 gcgcTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAac                                        <  1:3505827/93‑1 (MQ=255)

                                                 gcgcTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAac                                        <  2:3865451/93‑1 (MQ=255)

                                                   gcTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAacac                                      >  1:6152289/1‑93 (MQ=255)

                                                   gcTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAacac                                      <  1:2361411/93‑1 (MQ=255)

                                                    cTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACg                                     <  2:5081188/93‑1 (MQ=255)

                                                    cTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACg                                     >  1:780132/1‑93 (MQ=255)

                                                     tAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGc                                    <  1:6059035/93‑1 (MQ=255)

                                                     tAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGc                                    >  2:4232342/1‑93 (MQ=255)

                                                       aGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGccc                                  <  2:5434016/93‑1 (MQ=255)

                                                       aGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCCAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGccc                                  <  2:6315772/93‑1 (MQ=255)

                                                         ctgctgAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCgt                                <  1:967889/93‑1 (MQ=255)

                                                          tgctgAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCgtt                               <  2:3513858/93‑1 (MQ=255)

                                                          tgctgAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCgtt                               >  1:2445379/1‑93 (MQ=255)

                                                          tgctgAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCgtt                               >  2:8174607/1‑93 (MQ=255)

                                                           gctgAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCgttg                              >  1:6016314/1‑93 (MQ=255)

                                                           gctgAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCgttg                              <  1:6412293/93‑1 (MQ=255)

                                                            ctgAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCgttgt                             <  1:6664016/93‑1 (MQ=255)

                                                            ctgAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCgttgt                             <  2:6590084/93‑1 (MQ=255)

                                                            ctgAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCgttgt                             <  2:1701611/93‑1 (MQ=255)

                                                             tgAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCgttgtt                            >  2:7105716/1‑93 (MQ=255)

                                                              gAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGttt                           <  1:463606/93‑1 (MQ=255)

                                                              gAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGttt                           >  2:4727091/1‑93 (MQ=255)

                                                                aaTGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTttta                         <  1:3750964/93‑1 (MQ=255)

                                                                   gTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTtttattt                      <  2:8798543/93‑1 (MQ=255)

                                                                     tCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTttatttat                    <  1:4265890/93‑1 (MQ=255)

                                                                      cAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTAtg                   <  2:334851/93‑1 (MQ=255)

                                                                      cAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTAtg                   <  2:2642347/93‑1 (MQ=255)

                                                                       agagTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTAtgt                  <  2:5917089/93‑1 (MQ=255)

                                                                       agagTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTAtgt                  <  1:5156536/93‑1 (MQ=255)

                                                                        gagTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTAtgtg                 >  1:1274692/1‑93 (MQ=255)

                                                                         agTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTgg                <  2:2388128/93‑1 (MQ=255)

                                                                          gTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGa               <  1:3775200/93‑1 (MQ=255)

                                                                          gTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGa               >  1:7587956/1‑93 (MQ=255)

                                                                           tttGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGat              >  2:3880528/1‑93 (MQ=255)

                                                                            ttGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGata             <  2:6465839/93‑1 (MQ=255)

                                                                            ttGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGata             <  1:5299872/93‑1 (MQ=255)

                                                                              tgTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGAtatt           <  1:4500910/92‑1 (MQ=255)

                                                                                tGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGAtattat         <  1:5390579/93‑1 (MQ=255)

                                                                                 gAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATattatt        >  2:7260348/1‑93 (MQ=255)

                                                                                 gAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATattatt        <  1:8254403/93‑1 (MQ=255)

                                                                                 gAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATattatt        >  1:8723256/1‑93 (MQ=255)

                                                                                 gAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATattatt        >  1:3186496/1‑93 (MQ=255)

                                                                                   aGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTaa      >  1:7184929/1‑93 (MQ=255)

                                                                                     cGATCGTCGANAACATGTAATNTNTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATa    <  1:8563478/93‑1 (MQ=255)

                                                                                      gATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAg   <  2:4702416/93‑1 (MQ=255)

                                                                                       atcgtcGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTGTTTATGTGGATGTTATTAATAga  >  1:4851748/1‑92 (MQ=255)

GCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGC  >  NC_000913/1210696‑1210875

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATAT  >  NC_000913/1210693‑1210879

GGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCG                                                                                               <  SRR4302541.4827619/94‑1 (MQ=60)

  CGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTC                                                                                             >  SRR4302541.3860122/1‑94 (MQ=60)

  CGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTC                                                                                             <  SRR4302541.6669656/94‑1 (MQ=60)

   GCAATCAATGCCAAGACCGTAACTTATGACTCCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCG                                                                                            >  SRR4302541.7857376/1‑94 (MQ=60)

    CAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGA                                                                                           >  SRR4302541.2213344/1‑94 (MQ=60)

    CAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGA                                                                                           >  SRR4302541.5940822/1‑94 (MQ=60)

    CAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGA                                                                                           >  SRR4302541.7818641/1‑94 (MQ=60)

    CAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGA                                                                                           >  SRR4302541.8130444/1‑94 (MQ=60)

     AATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAA                                                                                          <  SRR4302541.2562128/94‑1 (MQ=60)

      ATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAA                                                                                         >  SRR4302541.5369654/1‑94 (MQ=60)

       TCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAA                                                                                        <  SRR4302541.1387134/94‑1 (MQ=60)

          ATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACAT                                                                                     <  SRR4302541.2725902/94‑1 (MQ=60)

          ATGCCAAGACCGTAACTTATGACTTCGAACGTCGGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACAT                                                                                     <  SRR4302541.8577731/94‑1 (MQ=60)

           TGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATG                                                                                    <  SRR4302541.210276/94‑1 (MQ=60)

            GCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGA                                                                                   >  SRR4302541.1167534/1‑94 (MQ=60)

             CCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTA                                                                                  >  SRR4302541.7665392/1‑94 (MQ=60)

              CAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAA                                                                                 <  SRR4302541.8532464/94‑1 (MQ=60)

               AAGACCGTAACTTATTACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAAT                                                                                <  SRR4302541.7426916/94‑1 (MQ=60)

               AAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAAT                                                                                <  SRR4302541.4483607/94‑1 (MQ=60)

                AGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATC                                                                               >  SRR4302541.1033651/1‑94 (MQ=60)

                AGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATC                                                                               <  SRR4302541.5254976/94‑1 (MQ=60)

                AGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATC                                                                               <  SRR4302541.7434127/94‑1 (MQ=60)

                   CCGTAACTTATGACTTCGAACGTTTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATGGTCGAAAACATATAATCTCT                                                                            >  SRR4302541.8823177/1‑94 (MQ=60)

                   CCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTTCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCT                                                                            >  SRR4302541.921298/1‑94 (MQ=60)

                   CCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCT                                                                            >  SRR4302541.8823037/1‑94 (MQ=60)

                   CCGCAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCT                                                                            <  SRR4302541.2906630/94‑1 (MQ=60)

                   ACGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCT                                                                            <  SRR4302541.5772364/94‑1 (MQ=60)

                     GTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCC                                                                          >  SRR4302541.1832964/1‑94 (MQ=60)

                     GTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCC                                                                          >  SRR4302541.4797651/1‑94 (MQ=60)

                       AACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCAT                                                                        >  SRR4302541.4427091/1‑94 (MQ=60)

                       AACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCAT                                                                        >  SRR4302541.8823860/1‑94 (MQ=60)

                         CTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATTTTCAGAGGTTGGTGAAGCGATCGTCTAAAACATGTAATCTCTCCATGT                                                                      <  SRR4302541.13570/94‑1 (MQ=60)

                         CTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGT                                                                      >  SRR4302541.7377917/1‑94 (MQ=60)

                            ATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTT                                                                   >  SRR4302541.2401036/1‑94 (MQ=60)

                             TGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTA                                                                  <  SRR4302541.4066671/94‑1 (MQ=60)

                              GACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAA                                                                 <  SRR4302541.357367/94‑1 (MQ=60)

                                CTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGCTCGTCGAAAACATAAAACCTCTCCTTTTGTTAAAT                                                               >  SRR4302541.1802117/1‑94 (MQ=40)

                                CTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAAT                                                               <  SRR4302541.619914/94‑1 (MQ=60)

                                CTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAAT                                                               <  SRR4302541.726029/94‑1 (MQ=60)

                                CTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAAT                                                               <  SRR4302541.5722351/94‑1 (MQ=60)

                                 TTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATA                                                              >  SRR4302541.6101000/1‑94 (MQ=60)

                                 TTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATA                                                              <  SRR4302541.5836521/94‑1 (MQ=60)

                                  TCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATAT                                                             >  SRR4302541.3904249/1‑94 (MQ=60)

                                   CGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGCAAACATGTAATCTCTCCATGTGTTAAATATT                                                            >  SRR4302541.4280045/1‑94 (MQ=60)

                                   CGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATT                                                            >  SRR4302541.752006/1‑94 (MQ=60)

                                   CGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATT                                                            >  SRR4302541.7372978/1‑94 (MQ=60)

                                   CGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATT                                                            >  SRR4302541.1209018/1‑94 (MQ=60)

                                    GATCGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTG                                                           <  SRR4302541.4090005/94‑1 (MQ=60)

                                     AACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGA                                                          >  SRR4302541.94430/1‑94 (MQ=60)

                                     AACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGA                                                          <  SRR4302541.4028451/94‑1 (MQ=60)

                                      ACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAA                                                         >  SRR4302541.3692805/1‑94 (MQ=60)

                                      ACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAA                                                         >  SRR4302541.6979391/1‑94 (MQ=60)

                                       CGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAA                                                        <  SRR4302541.818947/94‑1 (MQ=60)

                                          CTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGG                                                     >  SRR4302541.7145431/1‑94 (MQ=60)

                                          CTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGG                                                     <  SRR4302541.178481/94‑1 (MQ=60)

                                           TGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGTGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGG                                                    <  SRR4302541.8575432/94‑1 (MQ=60)

                                           TGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGG                                                    <  SRR4302541.4330780/94‑1 (MQ=60)

                                            GATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGC                                                   <  SRR4302541.6861318/94‑1 (MQ=60)

                                            GATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGC                                                   >  SRR4302541.4754351/1‑94 (MQ=60)

                                            GATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGC                                                   >  SRR4302541.6183825/1‑94 (MQ=60)

                                             ATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCG                                                  <  SRR4302541.3195306/94‑1 (MQ=60)

                                             ATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCG                                                  <  SRR4302541.3400582/94‑1 (MQ=60)

                                                GAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTAT                                               >  SRR4302541.8774888/1‑94 (MQ=60)

                                                GAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTAT                                               >  SRR4302541.3043292/1‑94 (MQ=60)

                                                 AAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATA                                              >  SRR4302541.2059649/1‑94 (MQ=60)

                                                 AAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATA                                              <  SRR4302541.6824912/94‑1 (MQ=60)

                                                  AGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAA                                             <  SRR4302541.3974214/94‑1 (MQ=60)

                                                  AGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAA                                             >  SRR4302541.8356704/1‑94 (MQ=60)

                                                   GGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAAC                                            <  SRR4302541.1836001/94‑1 (MQ=60)

                                                   GGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACAGGTAATCTCGCGATGGGTTAAAACTTGAAACGGGCGGATAAA                                            >  SRR4302541.5091303/1‑94 (MQ=27)

                                                    GCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACA                                           <  SRR4302541.3541035/94‑1 (MQ=60)

                                                    GCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACA                                           <  SRR4302541.3748337/94‑1 (MQ=60)

                                                     CGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACAC                                          >  SRR4302541.6215149/1‑94 (MQ=60)

                                                      GCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACG                                         >  SRR4302541.787391/1‑94 (MQ=60)

                                                      GCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACG                                         <  SRR4302541.2384426/94‑1 (MQ=60)

                                                        TAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCC                                       <  SRR4302541.6120942/94‑1 (MQ=60)

                                                        TAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCC                                       >  SRR4302541.8158655/1‑94 (MQ=60)

                                                         AAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCC                                      <  SRR4302541.381540/94‑1 (MQ=60)

                                                         AAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCC                                      >  SRR4302541.6269964/1‑94 (MQ=60)

                                                         AAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCC                                      <  SRR4302541.5627650/94‑1 (MQ=60)

                                                            CTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTT                                   >  SRR4302541.2469659/1‑94 (MQ=60)

                                                            CTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTT                                   >  SRR4302541.2469660/1‑94 (MQ=60)

                                                            CTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTT                                   <  SRR4302541.976975/94‑1 (MQ=60)

                                                             TGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTG                                  >  SRR4302541.8452491/1‑94 (MQ=60)

                                                             TGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTG                                  >  SRR4302541.1165115/1‑94 (MQ=60)

                                                             TGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTG                                  >  SRR4302541.6077972/1‑94 (MQ=60)

                                                             TGCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTG                                  >  SRR4302541.1231969/1‑94 (MQ=60)

                                                              GCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGT                                 <  SRR4302541.225341/94‑1 (MQ=60)

                                                              GCTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGT                                 <  SRR4302541.6477690/94‑1 (MQ=60)

                                                               CTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTT                                <  SRR4302541.3496734/94‑1 (MQ=60)

                                                               CTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTT                                <  SRR4302541.6732399/94‑1 (MQ=60)

                                                               CTGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTT                                >  SRR4302541.457616/1‑94 (MQ=60)

                                                                TGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTT                               <  SRR4302541.6055983/94‑1 (MQ=60)

                                                                TGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTT                               >  SRR4302541.821189/1‑94 (MQ=60)

                                                                TGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTT                               >  SRR4302541.3705676/1‑94 (MQ=60)

                                                                TGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTT                               >  SRR4302541.7806380/1‑94 (MQ=60)

                                                                TGAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTT                               >  SRR4302541.977377/1‑94 (MQ=60)

                                                                 TAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTT                              <  SRR4302541.8598924/94‑1 (MQ=60)

                                                                 GAAATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTT                              <  SRR4302541.468018/94‑1 (MQ=60)

                                                                   AATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTAT                            <  SRR4302541.3788700/94‑1 (MQ=60)

                                                                    ATGTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATT                           >  SRR4302541.7331573/1‑94 (MQ=60)

                                                                      GTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTT                         >  SRR4302541.2776570/1‑94 (MQ=60)

                                                                      GTTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTA                         >  SRR4302541.1234526/1‑94 (MQ=60)

                                                                       TTCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTAT                        <  SRR4302541.5318128/94‑1 (MQ=60)

                                                                        TCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATG                       <  SRR4302541.743904/94‑1 (MQ=60)

                                                                        TCAGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATG                       <  SRR4302541.4308525/94‑1 (MQ=60)

                                                                          AGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTG                     <  SRR4302541.5209584/94‑1 (MQ=60)

                                                                          AGAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTG                     >  SRR4302541.1287355/1‑94 (MQ=60)

                                                                           GAGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAAAACGCCCGTTGTTTTATTTATGTGG                    >  SRR4302541.3789267/1‑94 (MQ=60)

                                                                            AGTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGA                   >  SRR4302541.7669025/1‑94 (MQ=60)

                                                                             GTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGAT                  <  SRR4302541.955558/94‑1 (MQ=60)

                                                                             GTTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGAT                  <  SRR4302541.3813122/94‑1 (MQ=60)

                                                                              TTTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATA                 <  SRR4302541.1175281/94‑1 (MQ=60)

                                                                               TTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATAT                <  SRR4302541.2114658/94‑1 (MQ=60)

                                                                               TTGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATAT                <  SRR4302541.5354422/94‑1 (MQ=60)

                                                                                TGGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATT               <  SRR4302541.6519850/94‑1 (MQ=60)

                                                                                 TGTGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTA              <  SRR4302541.4546312/94‑1 (MQ=60)

                                                                                   TGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATT            <  SRR4302541.5445913/94‑1 (MQ=60)

                                                                                   TGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATT            >  SRR4302541.3218690/1‑94 (MQ=60)

                                                                                   TGAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATT            >  SRR4302541.8816530/1‑94 (MQ=60)

                                                                                   TGAAGCGATCGTCGAAAACATGGAATCTCTCCATGTGTTAAATATTGCAACGGGCGTATAACACGCCCGTTGTTTTATTgatagggatactgtt            >  SRR4302541.3218691/1‑79 (MQ=60)

                                                                                    GAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTA           <  SRR4302541.7731066/94‑1 (MQ=60)

                                                                                    GAAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTA           <  SRR4302541.8344295/94‑1 (MQ=60)

                                                                                     AAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAA          >  SRR4302541.5802947/1‑94 (MQ=60)

                                                                                     AAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAA          <  SRR4302541.4442763/94‑1 (MQ=60)

                                                                                     AAGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAA          >  SRR4302541.7261576/1‑94 (MQ=60)

                                                                                      AGCGATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAAT         >  SRR4302541.4055490/1‑94 (MQ=60)

                                                                                        CGATCGTCGANAACATGTAATNTNTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAG       <  SRR4302541.8655478/94‑1 (MQ=60)

                                                                                         GATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTGTTTATGTGGATGTTATTAATAGA      >  SRR4302541.4901214/1‑94 (MQ=60)

                                                                                         GATCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGC      >  SRR4302541.8628987/1‑94 (MQ=60)

                                                                                           TCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCAT    >  SRR4302541.2634987/1‑94 (MQ=60)

                                                                                           TCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCAT    >  SRR4302541.4677665/1‑94 (MQ=60)

                                                                                           TCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCAT    >  SRR4302541.4677666/1‑94 (MQ=60)

                                                                                           TCGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCAT    <  SRR4302541.6821284/94‑1 (MQ=60)

                                                                                            CGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATA   >  SRR4302541.2151407/1‑94 (MQ=60)

                                                                                            CGTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATA   >  SRR4302541.7202823/1‑94 (MQ=60)

                                                                                             GTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATAT  <  SRR4302541.2436778/94‑1 (MQ=60)

                                                                                             GTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATAT  >  SRR4302541.980534/1‑94 (MQ=60)

                                                                                             GTCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGCTGTTTTATTTATGTGGATATTATTAATAGCATAT  >  SRR4302541.7186857/1‑94 (MQ=60)

GGCGCAATCAATGCCAAGACCGTAACTTATGACTTCGAACGTCTGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATAT  >  NC_000913/1210693‑1210879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`