Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F13 I0 R1 206 15500.2 9478722 98.3% 9317583 135.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NZ_CP022686 4,014,291 G→T 9.5% intergenic (+137/‑207) bolA → / → tig transcriptional regulator BolA/trigger factor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0226864,014,2910GT 9.5% 242.5 / 2.6 150intergenic (+137/‑207)bolA/tigtranscriptional regulator BolA/trigger factor
Reads supporting (aligned to +/- strand):  ref base G (46/76);  new base T (2/17);  total (49/101)
Fisher's exact test for biased strand distribution p-value = 2.00e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 151 total aligned reads displayed.

AAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAGAACATCCCGGTT  >  NZ_CP022686/4014155‑4014427
                                                                                                                                         |                                                                                                                                        
aaaCGCATTTGCAACTGGCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTCTGTTTTGTCTGGATTTTGAGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGaaa                                                                                                                                       <  4:950038/140‑1 (MQ=255)
  ccGCATGTGCAACGGCCGGCGCTTTTCCTGTCTGTTGATAACTATTTAATCAAAACCGGCCGGCGGGCCGTTTTGTTTTGTCTGGATGTTGCGCTTTTTGCCCAGCATTCAGACGAAAAGCGCCCGGTAATGGTGaaaaa                                                                                                                                     <  4:426390/139‑1 (MQ=255)
  aCGCATTTGCAACTGTCGGCGCTTTTCCTTTTTGTTGCAAAATTTTTTATGAAAACCGGCCTGGGGGCGTTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCATCATTCAGACTAAAATCGCCCGGTATTTGTGaaaaa                                                                                                                                     <  8:759756/140‑1 (MQ=255)
  aCGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATTAAAAACGGCCTGCGGGCCGTTTTGTTTTTTCGGTATTTTGCGGTTTTTGGCAAGCATTAAGACGAAAATAGCCCGGGAAATGTGaaa                                                                                                                                       >  5:613603/1‑138 (MQ=255)
             ccTGGCGGCGAGTTTCCTGTCTGTTGATAAATATTTTATGAAAAACGCCCTGCGGGACGTTTTGTTTTGTCTGTTTTTTGCGATTTTTGCCCAGCATTCAGACTAAAATCGCCCGGGAATTGTGAAAAATTACGCGACAg                                                                                                                          <  7:954154/139‑1 (MQ=255)
             aCTGGCGGCGCTTTTCCAGTCTGTTGATAAATTTTTTATGAAAACCGGCCTGCGGGCGTTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCATCATTCAGACTAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAg                                                                                                                          <  7:601240/140‑1 (MQ=255)
               tGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTTGCTGTATTTTGCGCTTTTTGCCCAGCATTCACACGAAAATCGCCCGGTAATTGTGAAAAAATACGCGACAg                                                                                                                          <  2:998266/138‑1 (MQ=255)
               tGTCGGCGCTTTACCAGTATTTTGAAAAATATTTTTTGAAAAACGGCCTGGGGGCCGTTTTGTTTTTTCTGTATTTTGCTCTTTTTGCCCAGCATTCCTACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAgcg                                                                                                                        <  7:870708/140‑1 (MQ=255)
                gTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCGTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACCgcgc                                                                                                                       >  4:402931/1‑140 (MQ=255)
                gTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGGTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGCCAgcgc                                                                                                                       >  8:111559/1‑140 (MQ=255)
                  cGGCGCTTTTCCTGTATTTTGATAAAGATTTAATTAAAAACGGCCTGCGGGCGTTTTTGTTTTGTCTGGATTTTGCGTTTTTTGCCCTGAATTCAGACGAAAATCGCCCGGTAATTGTTAAAAAATACGCGACAgcgcgc                                                                                                                     <  3:65836/140‑1 (MQ=255)
                    gcgcTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTATTGAGTTTTCGCTATTTTCGCAGCATTCAGACGAAAATCTCCCGGGAATTTTGTAAAAAAAACCGCCAgcgccc                                                                                                                     >  5:534019/1‑136 (MQ=255)
                     cgcTTTTACAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTTTCTGGAATTTTCGAATTTAGCCCAGCAATCAGACTAAAATCGCCCTGGAATATTAAAAAAATAAGCGACAtcgaccaaa                                                                                                                  >  8:116177/1‑134 (MQ=255)
                           tCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGt                                                                                                            >  3:280667/1‑140 (MQ=255)
                                tATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTTCGCTTTTTGCCCCGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCg                                                                                                       >  4:967230/1‑140 (MQ=255)
                                 ttGTTGCAAATGTTTTTATCAAACCCGGCGGGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCCGCATTCAGACTAAAATCGCCCGGGATTTGTTAAAAAAACCGCGACAGCGCGCAATAACCGTTCTCGa                                                                                                      <  7:486904/139‑1 (MQ=255)
                                 agtttGCTAAAGATTTTATGAACAAGGGCCTGGGGGCCGTTTTTTTTTGTCTGTATTTTGCGCGTTTTGCCCAGCATTCAGAGTAAAATGGCCCGGGAATTGTTAAAAATTACGCGACAGCGCGCAATAACCGTtctc                                                                                                        <  2:1170060/135‑1 (MQ=255)
                                   ttttatAAATATTTTATCAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGTTTTTGCGCTTTTTCCCCCGCATTCAGACTAAAATCGCCCGGTAATTTTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGa                                                                                                      <  1:865442/133‑1 (MQ=255)
                                     tGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTTTCTGGATTTTGCGGTTTTTGGCCAGCAATCAGACGTAAATCGACCGGGAATTGTGAAAAAAAACGCGAAAGCGCGCAAAAACCGTTCTCGACTCa                                                                                                  >  7:1026756/1‑140 (MQ=255)
                                      tcTAAAGATTTTATGAAAAACGGCCTGCGGGAGGTTTTGTTTTGGCTGGATTTTTCGCTTTTTGCCCAGCATTCAGAAGAAAATCGCCCGGTAATTGTGAAAAAATACTCGACAGCGCGCAATAACCGTTCTCGACTc                                                                                                   <  6:1091702/137‑1 (MQ=255)
                                      gCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCCACAGCGCGCAATAACCGTTGTCGGCTCaa                                                                                                 >  3:1188979/1‑139 (MQ=255)
                                         aaaGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCGTTTTGGCCAGCATTCAGACGAAAATAGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTGTCCACTCATa                                                                                                >  5:1147108/1‑138 (MQ=255)
                                         aaaGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCAGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAATAATACGCGAc                                                                                                                            <  1:79661/110‑1 (MQ=255)
                                          aaGATTTTATGAAAAACGGCCTGCGGGCCGTTTTTTTTTGTATGGATTTTGAGCTTTTTGCCCAGAATTCAGACGAAAATCGCCCGGGCATTGTGAAAAAATAAGCGCCAGCGCGAAATAACCCTTATCGACGCATataa                                                                                             >  8:707526/1‑140 (MQ=255)
                                            gATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTGTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCCATAACCGTTCTCGACTCATaaaa                                                                                             >  2:964282/1‑138 (MQ=255)
                                            gATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCATTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGCCCGCGCGCAATAAACCGTCTCGACGCATaaaa                                                                                             >  2:122277/1‑138 (MQ=255)
                                            gATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTATGGATTTTTCGCGTTTTGCACAGCATTCAGACGAAAATCGCCCGGGAATTTTTAAAAAATACGCGACAGCCCGCCATAACCGTTCTAGACTCaaaaaa                                                                                             >  2:327597/1‑138 (MQ=255)
                                            gATTTTATGAAAAACGGCCTGCGGGCCGTGGTGTTTGGTCTGGATGTTGAGAGTTTTGGCCAGCAGTCAGACGAACATCGCCCGGGCTTTGTGAAAAAATACACGAAAGCGCGCACAAAACGTTCTCCACTCATaaaa                                                                                             >  6:791838/1‑138 (MQ=255)
                                              ttttATGAAAAACGGCGTGCGGGCCTTTTTGTTTTGTATGGATTTGGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATGGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGa                                                                                         <  8:321496/140‑1 (MQ=255)
                                                 tttgtaaacCGGCCTGGGGGGGTTTTTGTTTTTGCGGTATTTTGCCCTTTTTGCCCTCATTTCAGCCGAAAAACGCCCGGAAATTTTCAAAAATACCGCGACAGCGCGAAATAACCGTTCTCGACTCATAAAAGTGAt                                                                                        <  5:389464/133‑1 (MQ=255)
                                                 tATTAAAAACGGCGGGCGGGCGGTTTTGTTTTTTGTGGATTTGGCTCTTTTTGCCCAGCATTCAGACTAAAAGCGCCGGGTATTTGTTAAATAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGAt                                                                                        <  5:390973/138‑1 (MQ=255)
                                                 tATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGTATTTTGCGCTTTTTGCCCAGAATACAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc                                                                                      <  3:9583/140‑1 (MQ=255)
                                                 tATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGTGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc                                                                                      <  4:753446/140‑1 (MQ=255)
                                                 tATCAAAACCGGCCTGGGGGCGTTTTTGTTTTGTGTGTATTTTGCGCTTTTTCCCCCGCATTCACACGAAAATCGCCCGGTAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc                                                                                      <  7:987931/140‑1 (MQ=255)
                                                 tATCAAAAACGGCCGGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACCAAAATCGCCCGGTAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc                                                                                      <  4:201924/140‑1 (MQ=255)
                                                 aaTGAAAACCGGCCTGCGGGCGGTTTTGTTTTGTCTGGATTTGGCGGTTTTTGCCCAGAATTCTCCCGAAAAGCGCCCGGTAATTGTGAAAAAATCCGCGACAGCGCGCAATAACCGTGCTCGACTCATAAAAGTGATGc                                                                                      <  4:530383/139‑1 (MQ=255)
                                                  tatcaaaaCGGGCCGCGGCGCCGTTTTGTTTTGTAGGGATTTTGCGCTTTTAGCCCAGCATTAATACCAAAATCGCCCGGCAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc                                                                                      <  7:468224/136‑1 (MQ=255)
                                                   tGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc                                                                                      >  2:1132065/1‑138 (MQ=255)
                                                   tGAAAAACGGCCTGCGGGCCGTTTTGGTTTGTGTGGATTTTGCGCTTTTTGGCCAGCATTCAGACGCAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc                                                                                      >  5:200457/1‑138 (MQ=255)
                                                         aCGGCCTGCGGGCCGTGTTGTTTTGTGTGGATTTTGCGCGTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCtat                                                                                >  2:262666/1‑138 (MQ=255)
                                                              gtGCGGGCGTTTTTTTTTTGTATTTATTTTGCGCTTTTTCCCCCGCATTCAGACTAAAATCCCCCGGTAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGc                                                                           <  1:983121/137‑1 (MQ=255)
                                                              gggggggCGGTTTTGTTTGTGCTGTATTTTGCGCTTTTGGCCCCGCTTTCACACCAAAATCGCCCGGGAATTGTCAAAAAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGc                                                                           <  2:409178/134‑1 (MQ=255)
                                                               tGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCGGCATTAAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGGTCTCGACTCATAAAAGTGATGCCGCTATAATGCcgc                                                                        >  4:617726/1‑140 (MQ=255)
                                                                gCGGGCGTTTTTGTTTTGTCTGGATTTTGCTATTTTTGCCCAGCATTCAGACGAAAATCGCCCGGTATTTGTGAAAAAATCCGCGACAGCGCGAAATAACCGTTCTCGACTCATAAAAGAGATGCCGCTATAATGCcgcg                                                                       <  7:454444/140‑1 (MQ=255)
                                                                gCGGGCGTTTTTGTTTTGTCTGGATTTTGCGCTTTTGGCCCAGAATTCAGACGAAAATCGCCCGGTAATTGTTAAAAAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCcg                                                                         <  1:1090451/138‑1 (MQ=255)
                                                                gCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCcg                                                                         <  6:562166/138‑1 (MQ=255)
                                                                gCGGGCCGTTTTGTTTTGTCTGGATTTTGCGATTTTTGCCCAGAATTCATACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCcgcg                                                                       <  8:774576/140‑1 (MQ=255)
                                                                   gggcgtttttgttttgTATGGTTTTTTCGATTTTTGCCCTGCATTCCGACCAAAATCGCCCGTGATTTGTGAAAAAATACGCGACAGCGCTCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTc                                                                     <  4:998346/134‑1 (MQ=255)
                                                                   ggCGGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGCCGAAACTCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGt                                                                      <  6:1160652/138‑1 (MQ=255)
                                                                   ggCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTcc                                                                    <  4:866815/140‑1 (MQ=255)
                                                                        gtttttttttGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGTAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTAtt                                                                <  8:1096779/140‑1 (MQ=255)
                                                                         tgttgttttgtCTGGATTTTGCGCTTTTTGCCCAGCATTACGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGCCAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTAttt                                                               >  8:208435/3‑140 (MQ=255)
                                                                           ttgttttttCAGGATTTTGCGCATTTTGCCCAGCATTCCGACGAAAATCGCCCGGGAATTTTTAAAAAATACGCGCCAGCGCGCAAAAAACGTTCTCGACTCATAAAAGTTATGCCGGCTTAATGCCGCGGCCTAatt                                                               >  2:815595/1‑138 (MQ=255)
                                                                            tgttttttCTTTATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGATTTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTg                                                              <  2:867613/138‑1 (MQ=255)
                                                                            tgttttgtttTGATTTTGGGCTTTTTGACCACAATTATTACTAAAATCTCCAGTTAATTGATAAAAAATACGCGACAGCGAGCAATAACCGTTCTCGACTCATAAAAGTGATGCCTCTATAATGCCGCGTCCTATTTg                                                              <  6:630098/138‑1 (MQ=255)
                                                                            tgttttgtCTGTATTTTGCGGTTTTTGCCCAGCATTCAGACTAAAATCGCCCGGTAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTg                                                              <  1:528495/138‑1 (MQ=255)
                                                                            tgttttgtCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACTAAAATCGCCCGGTAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGaa                                                            <  3:223373/140‑1 (MQ=255)
                                                                            tgttttgtCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTg                                                              <  2:628803/138‑1 (MQ=255)
                                                                            ggttttgtATTGATTTTGCGTTTTTTCCCCTGCTTTCTCCCGAAATTCGCCGGGGATTTGTGAAAAAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTg                                                              <  2:218901/137‑1 (MQ=255)
                                                                                  gtgtgtaTTTTGCGCTTTTTGCCCAGCATGCAGCCTAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCt                                                        <  5:599558/132‑1 (MQ=255)
                                                                                   tCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTc                                                     >  3:1138499/1‑140 (MQ=255)
                                                                                   tCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTc                                                     >  8:889660/1‑140 (MQ=255)
                                                                                   tCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTc                                                     >  4:609620/1‑140 (MQ=255)
                                                                                       ttttttGCGATTTTTGCCCAGCATCACGATCAAAATCGCCCGGTATTTTTCAAAAAAAACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCgg                                                   <  5:196517/136‑1 (MQ=255)
                                                                                        aTTTTGCGCTTTTTGCCCAGCATTCATACGAAAATCGCCCGGGAATTTTGAAAAAATACGCGACAGCGAGCAATAACCGTTCTCGACTCATAAAAGAGATGCCGCTATAATGCCGCGTCCTATTTACAGGCTTTCGGtat                                                >  7:473273/1‑140 (MQ=255)
                                                                                             gtgcTTTTAGCCCTGCTTTCAGACTAAAATCGCCCGGTATTGTTTAAAAATTACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGgatgat                                             <  1:1163768/136‑1 (MQ=255)
                                                                                             gctttttttCCCAATCTTTCATATGAAAATCCCGCGGGAATTGATAAAAATTTCGCGACAGCGCTCAATAACCGTTCTAGACTCATAAAATTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGgatgat                                             <  1:327597/134‑1 (MQ=255)
                                                                                             gcgcTTTTTGCCCAGCATTCCGACTAAAATCGCCAGGTATTTGTGAAAAATTCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGgatgat                                             <  5:778689/138‑1 (MQ=255)
                                                                                             gcgcTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTc                                           >  8:393932/1‑140 (MQ=255)
                                                                                              cgcTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGAtt                                            >  5:94011/1‑138 (MQ=255)
                                                                                               gcTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTc                                           >  2:1221961/1‑138 (MQ=255)
                                                                                               gcTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGAAATAACCGTTCTAGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAAGGCTTTCGGGATGAGTc                                           >  2:464997/1‑138 (MQ=255)
                                                                                                 tttttGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTg                                         <  6:869793/138‑1 (MQ=255)
                                                                                                     tGCCCAGCATTCATACGAAAATCGCCCGGTAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTaa                                     <  5:921729/138‑1 (MQ=255)
                                                                                                       cccATCATACAGCCTAAAATCGCCCGTGAATTGTGAAAAAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAgg                                 <  3:816979/140‑1 (MQ=255)
                                                                                                         ctccATTCAGACGAAATTCTCCGGGGAATTGTGAAAAACAACGCGACAGCGCGCAATACCCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTATCAGGGa                               <  8:530932/137‑1 (MQ=255)
                                                                                                               tgattagAAATTCGGCCGGTATTTTTGAAAAAATACGCGACAGGGCGCAATAACCGTTGTCGACTCATAAAAGTGATGCCTCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAAtgt                           <  1:122277/132‑1 (MQ=255)
                                                                                                               tCAGACTAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCTCTATAATGCCTCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGtga                         <  8:105458/140‑1 (MQ=255)
                                                                                                               tCAGACGAAAATCGCCGGGTAAATGTGATAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGtga                         <  7:396057/140‑1 (MQ=255)
                                                                                                               tCACACGAAAATCGCCGGGGAATTGTGAAAAAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAAtgt                           <  6:441006/138‑1 (MQ=255)
                                                                                                               acataagAAAATCGCGCGGTAATTTTTAAAAAATACGAGACAGCGCGCAATAACGGTTCTCTACTTATAAAAGTTATGCCGATATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAAtgt                           <  5:706620/132‑1 (MQ=255)
                                                                                                               acataCGAAAAGCGCCCGGTAATTGGTAAAAATTACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGtga                         <  3:292380/136‑1 (MQ=255)
                                                                                                               acacccGAAAATCGCCCGGGAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAAtgt                           <  5:575163/133‑1 (MQ=255)
                                                                                                                 aGACGAAATTCGCCCGTGAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGTTGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGATTGtgatt                       <  8:507465/140‑1 (MQ=255)
                                                                                                                 aGACGAAAATCGCCCTGTAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGtga                         <  2:585922/138‑1 (MQ=255)
                                                                                                                 aGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATGTGTATGCTTTCGGGATGATTCTGGTAACAGGGAATGtgttt                       >  8:178731/1‑140 (MQ=255)
                                                                                                                  cactaaaaTCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGtgattg                      <  3:182684/136‑1 (MQ=255)
                                                                                                                    cGAAAATCGCCCGGGAATTGTGAAAAAATACGAGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGCATGCTTTCGGGATGATTCTGGTAACAGGGAATGtgattt                      >  2:154239/1‑137 (MQ=255)
                                                                                                                       aaaTCGCCCGGTAATTGTGAAAAAATACGCGACAGCGCGCAATCACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATtat                 <  4:141926/140‑1 (MQ=255)
                                                                                                                       aaaTCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTgattgatt                   <  2:1019153/138‑1 (MQ=255)
                                                                                                                        aaTCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATa                                                                                                                 <  6:188396/43‑1 (MQ=255)
                                                                                                                        aaTCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGgat                                                <  4:526175/108‑1 (MQ=255)
                                                                                                                        aaTCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGgat                                                >  3:526175/1‑108 (MQ=255)
                                                                                                                          tCGCCCGGTAATTGTGAAAAAATACGCGACAGCGCGAAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATtata                <  6:205092/138‑1 (MQ=255)
                                                                                                                          tCGCCCGGGAATTGTCAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAg              <  7:1041052/140‑1 (MQ=255)
                                                                                                                            gCCCGCGATTTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAg              <  1:257549/138‑1 (MQ=255)
                                                                                                                             cccGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTTATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAg              >  8:7781/1‑137 (MQ=255)
                                                                                                                             cccGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTTATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAg              <  7:7781/137‑1 (MQ=255)
                                                                                                                               cGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAGAAc           >  6:454788/1‑138 (MQ=255)
                                                                                                                                        tgAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAGAACATCCCGGtt  <  5:168524/138‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
AAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAGAACATCCCGGTT  >  NZ_CP022686/4014155‑4014427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

N/A