Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
A12 F13 I0 R1
|
206 |
15500.2 |
9478722 |
98.3% |
9317583 |
135.2 |
Breseq alignment
BRESEQ :: Evidence
|
evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
RA |
NZ_CP022686 |
4,014,291 |
G→T |
9.5% |
intergenic (+137/‑207) |
bolA → / → tig |
transcriptional regulator BolA/trigger factor |
|
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
* | NZ_CP022686 | 4,014,291 | 0 | G | T | 9.5%
| 242.5
/ 2.6
| 150 | intergenic (+137/‑207) | bolA/tig | transcriptional regulator BolA/trigger factor |
Reads supporting (aligned to +/- strand): ref base G (46/76); new base T (2/17); total (49/101) |
Fisher's exact test for biased strand distribution p-value = 2.00e-02 |
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 151 total aligned reads displayed.
AAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGG‑GCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAGAACATCCCGGTT > NZ_CP022686/4014155‑4014427
|
aaaCGCATTTGCAACTGGCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGG‑GCCGTTCTGTTTTGTCTGGATTTTGAGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGaaa < 4:950038/140‑1 (MQ=255)
ccGCATGTGCAACGGCCGGCGCTTTTCCTGTCTGTTGATAACTATTTAATCAAAACCGGCCGGCGG‑GCCGTTTTGTTTTGTCTGGATGTTGCGCTTTTTGCCCAGCATTCAGACGAAAAGCGCCCGGTAATGGTGaaaaa < 4:426390/139‑1 (MQ=255)
aCGCATTTGCAACTGTCGGCGCTTTTCCTTTTTGTTGCAAAATTTTTTATGAAAACCGGCCTGGGG‑GCGTTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCATCATTCAGACTAAAATCGCCCGGTATTTGTGaaaaa < 8:759756/140‑1 (MQ=255)
aCGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATTAAAAACGGCCTGCGG‑GCCGTTTTGTTTTTTCGGTATTTTGCGGTTTTTGGCAAGCATTAAGACGAAAATAGCCCGGGAAATGTGaaa > 5:613603/1‑138 (MQ=255)
ccTGGCGGCGAGTTTCCTGTCTGTTGATAAATATTTTATGAAAAACGCCCTGCGG‑GACGTTTTGTTTTGTCTGTTTTTTGCGATTTTTGCCCAGCATTCAGACTAAAATCGCCCGGGAATTGTGAAAAATTACGCGACAg < 7:954154/139‑1 (MQ=255)
aCTGGCGGCGCTTTTCCAGTCTGTTGATAAATTTTTTATGAAAACCGGCCTGCGG‑GCGTTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCATCATTCAGACTAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAg < 7:601240/140‑1 (MQ=255)
tGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGG‑GCCGTTTTGTTTTTGCTGTATTTTGCGCTTTTTGCCCAGCATTCACACGAAAATCGCCCGGTAATTGTGAAAAAATACGCGACAg < 2:998266/138‑1 (MQ=255)
tGTCGGCGCTTTACCAGTATTTTGAAAAATATTTTTTGAAAAACGGCCTGGGG‑GCCGTTTTGTTTTTTCTGTATTTTGCTCTTTTTGCCCAGCATTCCTACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAgcg < 7:870708/140‑1 (MQ=255)
gTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGG‑GCCGTTTTGTTTTGTCTGGATTTTGCGCGTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACCgcgc > 4:402931/1‑140 (MQ=255)
gTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGG‑GCCGTTTTGGTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGCCAgcgc > 8:111559/1‑140 (MQ=255)
cGGCGCTTTTCCTGTATTTTGATAAAGATTTAATTAAAAACGGCCTGCGG‑GCGTTTTTGTTTTGTCTGGATTTTGCGTTTTTTGCCCTGAATTCAGACGAAAATCGCCCGGTAATTGTTAAAAAATACGCGACAgcgcgc < 3:65836/140‑1 (MQ=255)
gcgcTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGG‑GCCGTTTTGTTTTGTATTGAGTTTTCGCTATTTTCGCAGCATTCAGACGAAAATCTCCCGGGAATTTTGTAAAAAAAACCGCCAgcgccc > 5:534019/1‑136 (MQ=255)
cgcTTTTACAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGG‑GCCGTTTTGTTTTTTCTGGAATTTTCGAATTTAGCCCAGCAATCAGACTAAAATCGCCCTGGAATATTAAAAAAATAAGCGACAtcgaccaaa > 8:116177/1‑134 (MQ=255)
tCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGG‑GCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGt > 3:280667/1‑140 (MQ=255)
tATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGG‑GCCGTTTTGTTTTGTCTGGATTTTTCGCTTTTTGCCCCGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCg > 4:967230/1‑140 (MQ=255)
ttGTTGCAAATGTTTTTATCAAACCCGGCGGGCGG‑GCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCCGCATTCAGACTAAAATCGCCCGGGATTTGTTAAAAAAACCGCGACAGCGCGCAATAACCGTTCTCGa < 7:486904/139‑1 (MQ=255)
agtttGCTAAAGATTTTATGAACAAGGGCCTGGGG‑GCCGTTTTTTTTTGTCTGTATTTTGCGCGTTTTGCCCAGCATTCAGAGTAAAATGGCCCGGGAATTGTTAAAAATTACGCGACAGCGCGCAATAACCGTtctc < 2:1170060/135‑1 (MQ=255)
ttttatAAATATTTTATCAAAAACGGCCTGCGG‑GCCGTTTTGTTTTGTCTGGTTTTTGCGCTTTTTCCCCCGCATTCAGACTAAAATCGCCCGGTAATTTTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGa < 1:865442/133‑1 (MQ=255)
tGCTAAAGATTTTATGAAAAACGGCCTGCGG‑GCCGTTTTGTTTTTTCTGGATTTTGCGGTTTTTGGCCAGCAATCAGACGTAAATCGACCGGGAATTGTGAAAAAAAACGCGAAAGCGCGCAAAAACCGTTCTCGACTCa > 7:1026756/1‑140 (MQ=255)
tcTAAAGATTTTATGAAAAACGGCCTGCGG‑GAGGTTTTGTTTTGGCTGGATTTTTCGCTTTTTGCCCAGCATTCAGAAGAAAATCGCCCGGTAATTGTGAAAAAATACTCGACAGCGCGCAATAACCGTTCTCGACTc < 6:1091702/137‑1 (MQ=255)
gCTAAAGATTTTATGAAAAACGGCCTGCGG‑GCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCCACAGCGCGCAATAACCGTTGTCGGCTCaa > 3:1188979/1‑139 (MQ=255)
aaaGATTTTATGAAAAACGGCCTGCGG‑GCCGTTTTGTTTTGTCTGGATTTTGCGCGTTTTGGCCAGCATTCAGACGAAAATAGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTGTCCACTCATa > 5:1147108/1‑138 (MQ=255)
aaaGATTTTATGAAAAACGGCCTGCGG‑GCCGTTTTGTTTTGTCAGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAATAATACGCGAc < 1:79661/110‑1 (MQ=255)
aaGATTTTATGAAAAACGGCCTGCGG‑GCCGTTTTTTTTTGTATGGATTTTGAGCTTTTTGCCCAGAATTCAGACGAAAATCGCCCGGGCATTGTGAAAAAATAAGCGCCAGCGCGAAATAACCCTTATCGACGCATataa > 8:707526/1‑140 (MQ=255)
gATTTTATGAAAAACGGCCTGCGG‑GCCGTTTTGTTTTGTGTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCCATAACCGTTCTCGACTCATaaaa > 2:964282/1‑138 (MQ=255)
gATTTTATGAAAAACGGCCTGCGG‑GCCGTTTTGTTTTGTCTGGATTTTGCGCATTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGCCCGCGCGCAATAAACCGTCTCGACGCATaaaa > 2:122277/1‑138 (MQ=255)
gATTTTATGAAAAACGGCCTGCGG‑GCCGTTTTGTTTTGTATGGATTTTTCGCGTTTTGCACAGCATTCAGACGAAAATCGCCCGGGAATTTTTAAAAAATACGCGACAGCCCGCCATAACCGTTCTAGACTCaaaaaa > 2:327597/1‑138 (MQ=255)
gATTTTATGAAAAACGGCCTGCGG‑GCCGTGGTGTTTGGTCTGGATGTTGAGAGTTTTGGCCAGCAGTCAGACGAACATCGCCCGGGCTTTGTGAAAAAATACACGAAAGCGCGCACAAAACGTTCTCCACTCATaaaa > 6:791838/1‑138 (MQ=255)
ttttATGAAAAACGGCGTGCGG‑GCCTTTTTGTTTTGTATGGATTTGGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATGGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGa < 8:321496/140‑1 (MQ=255)
tttgtaaacCGGCCTGGGG‑GGGTTTTTGTTTTTGCGGTATTTTGCCCTTTTTGCCCTCATTTCAGCCGAAAAACGCCCGGAAATTTTCAAAAATACCGCGACAGCGCGAAATAACCGTTCTCGACTCATAAAAGTGAt < 5:389464/133‑1 (MQ=255)
tATTAAAAACGGCGGGCGG‑GCGGTTTTGTTTTTTGTGGATTTGGCTCTTTTTGCCCAGCATTCAGACTAAAAGCGCCGGGTATTTGTTAAATAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGAt < 5:390973/138‑1 (MQ=255)
tATGAAAAACGGCCTGCGG‑GCCGTTTTGTTTTGTCTGTATTTTGCGCTTTTTGCCCAGAATACAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc < 3:9583/140‑1 (MQ=255)
tATGAAAAACGGCCTGCGG‑GCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGTGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc < 4:753446/140‑1 (MQ=255)
tATCAAAACCGGCCTGGGG‑GCGTTTTTGTTTTGTGTGTATTTTGCGCTTTTTCCCCCGCATTCACACGAAAATCGCCCGGTAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc < 7:987931/140‑1 (MQ=255)
tATCAAAAACGGCCGGCGG‑GCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACCAAAATCGCCCGGTAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc < 4:201924/140‑1 (MQ=255)
aaTGAAAACCGGCCTGCGG‑GCGGTTTTGTTTTGTCTGGATTTGGCGGTTTTTGCCCAGAATTCTCCCGAAAAGCGCCCGGTAATTGTGAAAAAATCCGCGACAGCGCGCAATAACCGTGCTCGACTCATAAAAGTGATGc < 4:530383/139‑1 (MQ=255)
tatcaaaaCGGGCCGCGGCGCCGTTTTGTTTTGTAGGGATTTTGCGCTTTTAGCCCAGCATTAATACCAAAATCGCCCGGCAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc < 7:468224/136‑1 (MQ=255)
tGAAAAACGGCCTGCGG‑GCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc > 2:1132065/1‑138 (MQ=255)
tGAAAAACGGCCTGCGG‑GCCGTTTTGGTTTGTGTGGATTTTGCGCTTTTTGGCCAGCATTCAGACGCAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc > 5:200457/1‑138 (MQ=255)
aCGGCCTGCGG‑GCCGTGTTGTTTTGTGTGGATTTTGCGCGTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCtat > 2:262666/1‑138 (MQ=255)
gtGCGG‑GCGTTTTTTTTTTGTATTTATTTTGCGCTTTTTCCCCCGCATTCAGACTAAAATCCCCCGGTAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGc < 1:983121/137‑1 (MQ=255)
gggggg‑gCGGTTTTGTTTGTGCTGTATTTTGCGCTTTTGGCCCCGCTTTCACACCAAAATCGCCCGGGAATTGTCAAAAAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGc < 2:409178/134‑1 (MQ=255)
tGCGG‑GCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCGGCATTAAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGGTCTCGACTCATAAAAGTGATGCCGCTATAATGCcgc > 4:617726/1‑140 (MQ=255)
gCGG‑GCGTTTTTGTTTTGTCTGGATTTTGCTATTTTTGCCCAGCATTCAGACGAAAATCGCCCGGTATTTGTGAAAAAATCCGCGACAGCGCGAAATAACCGTTCTCGACTCATAAAAGAGATGCCGCTATAATGCcgcg < 7:454444/140‑1 (MQ=255)
gCGG‑GCGTTTTTGTTTTGTCTGGATTTTGCGCTTTTGGCCCAGAATTCAGACGAAAATCGCCCGGTAATTGTTAAAAAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCcg < 1:1090451/138‑1 (MQ=255)
gCGG‑GCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCcg < 6:562166/138‑1 (MQ=255)
gCGG‑GCCGTTTTGTTTTGTCTGGATTTTGCGATTTTTGCCCAGAATTCATACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCcgcg < 8:774576/140‑1 (MQ=255)
gggcgtttttgttttgTATGGTTTTTTCGATTTTTGCCCTGCATTCCGACCAAAATCGCCCGTGATTTGTGAAAAAATACGCGACAGCGCTCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTc < 4:998346/134‑1 (MQ=255)
g‑gCGGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGCCGAAACTCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGt < 6:1160652/138‑1 (MQ=255)
g‑gCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTcc < 4:866815/140‑1 (MQ=255)
gtttttttttGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGTAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTAtt < 8:1096779/140‑1 (MQ=255)
tgttgttttgtCTGGATTTTGCGCTTTTTGCCCAGCATTACGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGCCAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTAttt > 8:208435/3‑140 (MQ=255)
ttgttttttCAGGATTTTGCGCATTTTGCCCAGCATTCCGACGAAAATCGCCCGGGAATTTTTAAAAAATACGCGCCAGCGCGCAAAAAACGTTCTCGACTCATAAAAGTTATGCCGGCTTAATGCCGCGGCCTAatt > 2:815595/1‑138 (MQ=255)
tgttttttCTTTATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGATTTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTg < 2:867613/138‑1 (MQ=255)
tgttttgtttTGATTTTGGGCTTTTTGACCACAATTATTACTAAAATCTCCAGTTAATTGATAAAAAATACGCGACAGCGAGCAATAACCGTTCTCGACTCATAAAAGTGATGCCTCTATAATGCCGCGTCCTATTTg < 6:630098/138‑1 (MQ=255)
tgttttgtCTGTATTTTGCGGTTTTTGCCCAGCATTCAGACTAAAATCGCCCGGTAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTg < 1:528495/138‑1 (MQ=255)
tgttttgtCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACTAAAATCGCCCGGTAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGaa < 3:223373/140‑1 (MQ=255)
tgttttgtCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTg < 2:628803/138‑1 (MQ=255)
ggttttgtATTGATTTTGCGTTTTTTCCCCTGCTTTCTCCCGAAATTCGCCGGGGATTTGTGAAAAAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTg < 2:218901/137‑1 (MQ=255)
gtgtgtaTTTTGCGCTTTTTGCCCAGCATGCAGCCTAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCt < 5:599558/132‑1 (MQ=255)
tCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTc > 3:1138499/1‑140 (MQ=255)
tCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTc > 8:889660/1‑140 (MQ=255)
tCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTc > 4:609620/1‑140 (MQ=255)
ttttttGCGATTTTTGCCCAGCATCACGATCAAAATCGCCCGGTATTTTTCAAAAAAAACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCgg < 5:196517/136‑1 (MQ=255)
aTTTTGCGCTTTTTGCCCAGCATTCATACGAAAATCGCCCGGGAATTTTGAAAAAATACGCGACAGCGAGCAATAACCGTTCTCGACTCATAAAAGAGATGCCGCTATAATGCCGCGTCCTATTTACAGGCTTTCGGtat > 7:473273/1‑140 (MQ=255)
gtgcTTTTAGCCCTGCTTTCAGACTAAAATCGCCCGGTATTGTTTAAAAATTACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGgatgat < 1:1163768/136‑1 (MQ=255)
gctttttttCCCAATCTTTCATATGAAAATCCCGCGGGAATTGATAAAAATTTCGCGACAGCGCTCAATAACCGTTCTAGACTCATAAAATTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGgatgat < 1:327597/134‑1 (MQ=255)
gcgcTTTTTGCCCAGCATTCCGACTAAAATCGCCAGGTATTTGTGAAAAATTCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGgatgat < 5:778689/138‑1 (MQ=255)
gcgcTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTc > 8:393932/1‑140 (MQ=255)
cgcTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGAtt > 5:94011/1‑138 (MQ=255)
gcTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTc > 2:1221961/1‑138 (MQ=255)
gcTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGAAATAACCGTTCTAGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAAGGCTTTCGGGATGAGTc > 2:464997/1‑138 (MQ=255)
tttttGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTg < 6:869793/138‑1 (MQ=255)
tGCCCAGCATTCATACGAAAATCGCCCGGTAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTaa < 5:921729/138‑1 (MQ=255)
cccATCATACAGCCTAAAATCGCCCGTGAATTGTGAAAAAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAgg < 3:816979/140‑1 (MQ=255)
ctccATTCAGACGAAATTCTCCGGGGAATTGTGAAAAACAACGCGACAGCGCGCAATACCCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTATCAGGGa < 8:530932/137‑1 (MQ=255)
tgattagAAATTCGGCCGGTATTTTTGAAAAAATACGCGACAGGGCGCAATAACCGTTGTCGACTCATAAAAGTGATGCCTCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAAtgt < 1:122277/132‑1 (MQ=255)
tCAGACTAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCTCTATAATGCCTCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGtga < 8:105458/140‑1 (MQ=255)
tCAGACGAAAATCGCCGGGTAAATGTGATAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGtga < 7:396057/140‑1 (MQ=255)
tCACACGAAAATCGCCGGGGAATTGTGAAAAAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAAtgt < 6:441006/138‑1 (MQ=255)
acataagAAAATCGCGCGGTAATTTTTAAAAAATACGAGACAGCGCGCAATAACGGTTCTCTACTTATAAAAGTTATGCCGATATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAAtgt < 5:706620/132‑1 (MQ=255)
acataCGAAAAGCGCCCGGTAATTGGTAAAAATTACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGtga < 3:292380/136‑1 (MQ=255)
acacccGAAAATCGCCCGGGAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAAtgt < 5:575163/133‑1 (MQ=255)
aGACGAAATTCGCCCGTGAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGTTGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGATTGtgatt < 8:507465/140‑1 (MQ=255)
aGACGAAAATCGCCCTGTAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGtga < 2:585922/138‑1 (MQ=255)
aGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATGTGTATGCTTTCGGGATGATTCTGGTAACAGGGAATGtgttt > 8:178731/1‑140 (MQ=255)
cactaaaaTCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGtgattg < 3:182684/136‑1 (MQ=255)
cGAAAATCGCCCGGGAATTGTGAAAAAATACGAGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGCATGCTTTCGGGATGATTCTGGTAACAGGGAATGtgattt > 2:154239/1‑137 (MQ=255)
aaaTCGCCCGGTAATTGTGAAAAAATACGCGACAGCGCGCAATCACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATtat < 4:141926/140‑1 (MQ=255)
aaaTCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTgattgatt < 2:1019153/138‑1 (MQ=255)
aaTCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATa < 6:188396/43‑1 (MQ=255)
aaTCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGgat < 4:526175/108‑1 (MQ=255)
aaTCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGgat > 3:526175/1‑108 (MQ=255)
tCGCCCGGTAATTGTGAAAAAATACGCGACAGCGCGAAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATtata < 6:205092/138‑1 (MQ=255)
tCGCCCGGGAATTGTCAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAg < 7:1041052/140‑1 (MQ=255)
gCCCGCGATTTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAg < 1:257549/138‑1 (MQ=255)
cccGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTTATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAg > 8:7781/1‑137 (MQ=255)
cccGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTTATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAg < 7:7781/137‑1 (MQ=255)
cGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAGAAc > 6:454788/1‑138 (MQ=255)
tgAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAGAACATCCCGGtt < 5:168524/138‑1 (MQ=255)
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AAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGG‑GCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAGAACATCCCGGTT > NZ_CP022686/4014155‑4014427
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Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A