Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F36 I0 R1
|
151 |
8012.5 |
7490824 |
98.1% |
7348498 |
134.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,014,291 |
G→T |
22.5% |
intergenic (+137/‑207) |
bolA → / → tig |
transcriptional regulator BolA/trigger factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,014,291 | 0 | G | T | 22.5%
| 144.5
/ 8.5
| 122 | intergenic (+137/‑207) | bolA/tig | transcriptional regulator BolA/trigger factor |
| Reads supporting (aligned to +/- strand): ref base G (31/52); new base T (2/29); total (33/89) |
| Fisher's exact test for biased strand distribution p-value = 9.39e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 123 total aligned reads displayed.
AAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAGAACATCCCGGTTCC > NZ_CP022686/4014155‑4014429
|
aaaCGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCAAAAGATTTTATTAAAAACGGCCTGCGGGCGGTTTTGTTTTTTCTGGATTTTGCGCTTTTTGCCCAGAATTCACACTAAAATCGCCCGGGAATTGTGa < 3:699766/138‑1 (MQ=255)
aCGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTGTTGGGTTGTCTGGTTTTTGGGCTTTTTGCCCCGCCTTCAGGCGAAAATCGCGCGGGAATTGTGaaa > 5:784149/1‑138 (MQ=255)
ttGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGTGTTTTGGCTTTTTGCCCAGCAGTCAGACGCAAATCGCCCCGGAATTGGGAAAAAATAcgc > 7:96490/1‑140 (MQ=255)
tGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCGTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGCATTGTGAAAAAAAAcc > 2:58713/1‑137 (MQ=255)
aCTGTCGGGGTTTTTCCATTATGTTTCTAAAGATTTTATTAAAAACGGCCTGCGGGCGGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAAAACGCGACAg < 7:405151/140‑1 (MQ=255)
aCTGGCGGCGCTTTTCCAGTTTGTTGCTAAAGATTTTATGAAAAAGGGCCTGCGGGCGGTTTTGTTTTGTCTGTATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTTAAAAAATACGCGAc < 6:469384/138‑1 (MQ=255)
aCTGGCGGCGCTTTCCCTGTTTGTTGATAAATTTTTTATTAAAACCGGCCTGGGGGCCGTTTTGTTTTGTCTGTTTTTTGGGCTTTTTCCCCCGAATTCAGACTAAAATCGCCCGGGAATTGTGAAAAAAAACGCGACAg < 7:497795/140‑1 (MQ=255)
tGTCGGCGCTTTTCCAGTATGTTGATAAATATTTTATTAAAACCGGCCTGCGGGCGGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCATACTAAAATCGCCCGGTAATTGTTAAAAAAAACGCGACAg < 5:134768/138‑1 (MQ=255)
cGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAgcgc > 6:639472/1‑138 (MQ=255)
ggCGCTTTACCATTATGTTTAAAAATATTTTATTAAAACCGGCCTGGGGGCCTTTTTGTTTTGTCTGTATTTTGCGCTTTTTCCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACCCGACAgcgcg < 4:121907/138‑1 (MQ=255)
cgcTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTGTTTGGTTTTTGCGCGTTTTGGCCAGCATTAACCCGAAAATAGCCCGGGAATTGTGAAAAAATAAGCGACCgcgcgcc > 3:289990/1‑137 (MQ=255)
ccAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTTCGCTTTTTGCCCAGCATTCAGACGAAAATAGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCg > 6:116166/1‑138 (MQ=255)
tgTATGTTTCAAAAGATTTTATGAAAAACGGCCTGCGGGCGTTTTTGTTTTTTCTTGATTTTGCGATTTTTGCCCAGATTTCAGACGAAAATCGCCCGGTAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGtt < 3:27529/137‑1 (MQ=255)
tttGTTGCTAAATATTTTATGAAAACCGGCCGGGGGGCGGTTTTGTTTTGTGTGGATTTTGCGCTTTTTGCCCAGCATTCACATGAAATTCGCCCGGTAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTtct < 1:89869/136‑1 (MQ=255)
ttGTTGCTAAAGATTTTATGAAAAACGCCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGCCGAAAATCGCCCGGTAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTtctc < 4:953001/137‑1 (MQ=255)
tGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTTTTTTGTCAGGAGTTTTCGCGTTTTTGCCATCAATCAGACGAAAATAGCCCCGGAAATGTTAAAAAAAAACCGGCAGCCCGCAAAAACCGGTCTAGaa > 7:482033/1‑139 (MQ=255)
gCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTTTCTGGATTTTGCGCTTTTTTCCCAGCATTAATACGAAAATCGCCCGGGAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACta > 5:352609/1‑137 (MQ=255)
aaaGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTAAGACGAAAATCGCCCGGGAATTGTGAAAAAATAAGCGCCAGCGCGCAATAACCGTTCTCGACTCATa > 3:719356/1‑138 (MQ=255)
taTTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACTAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGt < 8:131873/139‑1 (MQ=255)
gATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATaaaa > 4:934354/1‑138 (MQ=255)
gATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGGGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATaaaa > 2:793127/1‑138 (MQ=255)
ttttATTAAAACCGGCCGGCGGGCGTTTTTGTTTTGTATGGATTTTGCGCTTTTTGCCCAGAATTCAGACTAAAATCGCCCGGTAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGa < 8:471133/140‑1 (MQ=255)
ttttATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTGTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAAATACCGTTCGCGACTCATAAAAGt > 6:149508/1‑138 (MQ=255)
tattATCAAAAACGGCCTGCGGGCGGTTTTGTTTTGTAGTGTTTTTGCGCTTTTTGCCCAGCATCAAGACTAAAAGCGCCCGGGAATTGTCAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGa < 8:869931/138‑1 (MQ=255)
tttATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGGTTTTGCGGTTTTTGCCCCGCATTCAGTCGGAAATCGCCCGGGAATTGTGTAAAAATACGCGCCAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGAt > 7:339079/1‑140 (MQ=255)
tttATGAAAAACGGCCTGCGGGCCGTGGTGTTTTGGGTGGGTTTTGCGCGTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGGGAAAAAATAAGCGCCAGCGCGCCATAACCGTTGTCGTCTCATAAAAGTGAt > 8:483256/1‑140 (MQ=255)
ttttaaaaaGGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGAATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGAt < 6:320552/134‑1 (MQ=255)
tttGAAAACCGGCCGGGGGGCGTTTTTTTTTTGTGTGTTTTTTGGGCTTTTTGCCACGCATTCAGACTAAAATCGCCGGGTAATTGTGAAAAAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc < 7:304293/138‑1 (MQ=255)
tttGAAAAACGGCCTGGGGGCCGTTTTTTTTTGTCTTTATTTTGCGATTTTTGCCCAGAATTCAGACGAAATTCGCCCGGGAATTGTGAAAAAAAACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGAt < 3:492747/136‑1 (MQ=255)
tttGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTGTGGTTTTTGCGCTTTTTGCCCAGCATTCCGACGAAAATCGCCCGGTAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGAt < 1:388342/136‑1 (MQ=255)
tATTAAAACCGGCCTGCGGGCGTTTTTGTTTTGTTTGTTTTTTGCGCTTTTTGCCCAGCATTCAGACGAAACTCGCCCGGTAATTGTTAAAAAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGAt < 3:394092/138‑1 (MQ=255)
tATTAAAAACGGCTTGCGGGCAGTTTTTTTTTTTCTGGTTTTTGGTTTTTTTGCAAAGCATTCATACTAAAATCGCCCGGTAATTTTTAAAAAAAACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc < 7:399583/140‑1 (MQ=255)
tATTAAAAACGGCCTGCGGGCGTTTTTTTTTTGGATGTATTTTGGGCTTTTTGCCCAGATTTCATCCGAAAATCGCCCGGTAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGAt < 1:499090/138‑1 (MQ=255)
tATTAAAAACGGCCTGCGGGCCGTTTTGTTTTTTGTGGATTTGGCGCTTTTTGCCAAGCATTCAGACGAAAATCGCCCGGTAATTGTCAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGAt < 5:252278/138‑1 (MQ=255)
tATGAAAACCGGCCGGGGGGCCTTTTTGTTTTGGTTGTTTTTTGCGATTTTCGCCAAGCATTCCGCTGAATACCGCCCGGTAATTGTGAAAAATTACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGAt < 5:753697/138‑1 (MQ=255)
tATGAAAAACGGCCTGGGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCCGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGAt < 2:568675/138‑1 (MQ=255)
tATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGAt < 6:793749/138‑1 (MQ=255)
tATGAAAAACGCGCTGGGGGCGGTTTTTTTTTGTGTGTTTTTTGCGCTTTTTGCCCTGAATTAAGACTAAAATCGCCCGGTAATTGTCAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGAt < 1:483678/138‑1 (MQ=255)
tATCAAAACCGGCGTGCGGGCCTTTTTGTTTTGTATGGATTTTGCGTTTTTTGCCCAGAATACACACTAAAATCGCCCGTGAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGAt < 1:404747/138‑1 (MQ=255)
tATCAAAAACGGCCTGGGGGCGGTTTTTTTTTGTCTGGTTTTTGCGATTTTTGCCCAGAATTCATACTAAAATCGCCCGGTAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGAt < 5:471347/138‑1 (MQ=255)
aaTGAAAACCGGCATGGGGGCGGTTTTTTTTTTTCTGTTTTTTGCGGTTTTTGCCCAGCTTTAAGACTAAATTCGCCCGGGAATTGTCAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGAt < 1:732682/137‑1 (MQ=255)
ttcaaaaaCGGCCTGCGGGCCGTTTTGTTTTGTTTGTATTTTGCGCTTTTTCCCCAGCATTCTCACGAAAATCGCCCGGGAATTGTGAAAAAAAACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATg < 5:163379/135‑1 (MQ=255)
ttaaaaaCGGACTCCGCGCCGTTTTGTTTAGTCTGGATTTTGCGCTTATTGCCCAGCATTCACACTAATATAGCCCGGGAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCg < 8:489093/138‑1 (MQ=255)
tcaaaacCGGCGTGCGGGCCGTTTTGTTTTTTATGTATTTTGCGCTTTTTGCCCAGCTTTCAGACGAAAATCGCCCGGGAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc < 3:805279/136‑1 (MQ=255)
tGAAAACGGGCCTGCGGGCGGTTTTGTTTTGTCTGTATTTTGCGCTTTTTGCCCAGCATTAATACTAAATTCGCCGGGTAATTGTTAAAAAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCg < 8:458537/140‑1 (MQ=255)
tGAAAAACGGCCTGCGGGCCGTGTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCCTTCAGACGAAAATCGCCCGGGATTTGTGAAAAAATACGCGACAGCGCGCAATACCCGTTCTCGACTGATAAAAGTGATGc > 2:832468/1‑138 (MQ=255)
aaCGGCCTGGGGGCCTTTTTGTTTGGTATGGATTTTGCGATTTTTGCCCAGCATTAACACCAAAAACGCCCGGTAATTTTTAAAAAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCta < 5:165121/138‑1 (MQ=255)
gCGGGCCGTTTTTTTTTGTCTGGAGTTTGCGCTGTTTGCCCATCATTCAGACGAAAAGCGCCCGGGAATTGTTAAAAAAAACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCcg < 5:697416/138‑1 (MQ=255)
gCGGGCCGTTTTGTTTTGTCTGTATTTTTCGGTTTTTGCCCATATTTCAGACGAAAATCGCCCGGTAATTGTGAAAAAATACGCGTCAGCTCGCAATTACCGTTCTCGAATCATAAATGTGATGCCGCTATAATGCcg < 2:254274/138‑1 (MQ=255)
gggCGGTTTTGTTTTGTCTGGATTTTGCGCTTTTTCCCCAGAATCCAGACGAAAATCGCCCGGTATTTGTGAAAAAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTc < 7:191372/140‑1 (MQ=255)
tttgttttgtCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACACCCCGCAATAACCGTTCTCGCCACAAAAAAGTGATGCCGCTATAATACCGCGTccaaat > 4:378775/1‑134 (MQ=255)
tgttttttCTGCTTTTTGCTCTTTTTCCCCCTCTTACATACTAAAAACGCCCGTTAATTGATATAAAATACGCGACAGCGCGCAATACCCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTg < 1:236513/138‑1 (MQ=255)
tgtCTGGATTTTTCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAAAACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAACTTATGCCGCTATAATGCCGCGGCCTATTTGAATTCtt > 8:639877/1‑140 (MQ=255)
tgtATGGATTTTTCGCTTTTTTCCCAGCATTCAGACGAAAATCGCCCCGGAAATTTGAAAAAATAACCGACCGCCCGCAATAAACCTTATCGACTCAAAAAAGTGATGCCGCAAAAATTCCGCGTCCAATTTTaaatc > 6:749368/1‑135 (MQ=255)
tCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTc > 8:599834/1‑140 (MQ=255)
tGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTc > 4:427930/1‑138 (MQ=255)
tGGATTATGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCTCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTACTATTTGAATGCttgc > 6:856297/1‑136 (MQ=255)
taTTTTGCGCTTTTTGCCCAGCATTCAGACGAAATTGGCCGGGGAATTGGTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCCTAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCgg < 4:469197/137‑1 (MQ=255)
gcttttGCGCGTTTTTCCAACAATACAGACGAAATGCGCCCGGGAATTGTTAAAAAAACCGCGACAGCGCGCAATAACAGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCgg < 6:237909/136‑1 (MQ=255)
aTTTTGCGATTTTTGCCCACCATTCAGACTAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCggg < 5:286626/138‑1 (MQ=255)
gtgatttttGCCCAGCATTCTGACGAATATCGCCAGTTAATTTTGAAATAATACGCGACAGCGCTAAATAACCGTTCTCGTCTCATATATGTGATGCCGCTATAATTCGGAGTCCTATTTGAATGCTTTCGGgatgat < 2:770250/134‑1 (MQ=255)
gggttttttCCCCACCATCCACACTAAAATCGCCCGGTAATTGTAAAAAAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTc < 7:483256/136‑1 (MQ=255)
gcgcTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGTGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc > 8:685439/1‑97 (MQ=255)
gcgcTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGTGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc < 7:685439/97‑1 (MQ=255)
gcgcTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGgatgat < 1:2196/138‑1 (MQ=255)
gcgcTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGgatgat < 1:206683/138‑1 (MQ=255)
gcgcTTTTTGCCCAGAAATCATACCAAAATCGCCCGGTAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGgatgat < 5:377537/138‑1 (MQ=255)
gcgcTTTTTCCCCAGCATTCAGACGAAAATCGCACGTGAATTTTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTc < 7:532235/140‑1 (MQ=255)
gcTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTc > 4:730234/1‑138 (MQ=255)
gcTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTACGGGATGATTc > 4:409551/1‑138 (MQ=255)
ttttttGCCACGAATTCAGACTAAAAGCGCCGGGGAATTGTTAAAAAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCt < 1:287790/137‑1 (MQ=255)
tttttGCCCAGCATTCATACGAAAATCCCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGt < 7:342295/140‑1 (MQ=255)
tttttGCCCAGCATTCAGACTAAAATCGCCCGGTATTTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTg < 3:214877/138‑1 (MQ=255)
tttttGCCCAGCATTCAGACGAAAATCGCCCGGTAATTGTCAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTg < 1:98885/138‑1 (MQ=255)
tGCCCTGCTTTCTGACTAAAATCGCCCGGGATTTGTTAAAATATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTaa < 1:125564/138‑1 (MQ=255)
cccAGCATTCAGACGAAAATCGCCCGGGAATTGTCAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACa < 3:361447/138‑1 (MQ=255)
ccgCATTCCGACGAAAATCGCCCGTGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAgg < 3:678197/136‑1 (MQ=255)
cAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAATGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAgg < 3:346861/138‑1 (MQ=255)
cAGAATTCAGACTAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGa < 7:162045/140‑1 (MQ=255)
gCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAAt > 8:188723/1‑140 (MQ=255)
taaGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAAtgt < 5:578495/136‑1 (MQ=255)
tCATACTAATATCGCCCGTTAAGTGTGAAAAAATACGCGAAAGCGCGCAATAACAGTTCTCGACTCATAAAAGTGATGCCGCTATAATTCCGCGTGCTATTTTAATGCTTTCGGGATGATTCTGGTAACAGGGAAtgt < 3:142059/138‑1 (MQ=255)
tCAGACTAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAAtgt < 5:447356/138‑1 (MQ=255)
tCAGACGAAAATCGCCCGGGAATTTTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAAtgt < 4:268420/138‑1 (MQ=255)
tCAGACGAAAATCGCCCGGGAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAAtgt < 6:926290/138‑1 (MQ=255)
tCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAAtgt < 6:379171/138‑1 (MQ=255)
cAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGtgat < 8:414200/140‑1 (MQ=255)
aaGACGAAAATCGCCCGGTAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGtgat < 7:858737/139‑1 (MQ=255)
aGACGAAAATCGCCCGGGAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGtga < 2:470501/138‑1 (MQ=255)
aCGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGtgattga < 7:775265/140‑1 (MQ=255)
gAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGtgattga > 4:889741/1‑138 (MQ=255)
aaaTCGCCCGGTAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTgattgatt < 2:334738/138‑1 (MQ=255)
aaaTCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTgattgatt < 3:897685/138‑1 (MQ=255)
aaTCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGCTGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATta > 1:845389/1‑138 (MQ=255)
aaTCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATta > 3:207446/1‑138 (MQ=255)
tCGCCCGGTAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCTACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATtata < 5:354288/138‑1 (MQ=255)
tCGCCCGGGAATTGTGAAAAAATACGCGACATCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGACGCTATAATGCCGCGTCATATTTGAATGCATTCGGGATGATTCTGGTAACAGGGAAGATGATTGATtata > 4:170995/1‑138 (MQ=255)
tCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGCATGTGATTGATtata > 3:873670/1‑138 (MQ=255)
gCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAg < 6:493678/138‑1 (MQ=255)
aaTTGCTAAAATATACGCGACAGCGCGCAATAACCGTACTCGACTCATAATAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGATTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAGAACATcc < 2:41618/138‑1 (MQ=255)
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AAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAGAACATCCCGGTTCC > NZ_CP022686/4014155‑4014429
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
