Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F2 I0 R1
|
193 |
6708.0 |
8620653 |
98.5% |
8491343 |
136.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,806,256 |
G→T |
13.7% |
E1583* (GAA→TAA) |
cdiA → |
contact‑dependent inhibition effector tRNA nuclease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,806,256 | 0 | G | T | 13.7%
| 431.2
/ 4.4
| 244 | E1583* (GAA→TAA) | cdiA | contact‑dependent inhibition effector tRNA nuclease |
| Reads supporting (aligned to +/- strand): ref base G (117/59); new base T (2/43); total (120/124) |
| Fisher's exact test for biased strand distribution p-value = 3.87e-15 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 252 total aligned reads displayed.
ACAGAGAATGAATATCTGGTATACCGCTACGACCCGAAAACGTTTTACGGTAGCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATGCAGGTAGTGTCAGTCCGGTGGTCTCTGCAC > NZ_CP022686/3806118‑3806394
|
aCAGAGAATGAATTTCTGGTATACCGCTACGACCCGAAAACGTTTTACGGTAGCGCTGCAAAAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACAATAAGATTTTCAATGGATGGCCGGG‑a > 8:302478/1‑140 (MQ=255)
aCAGAGAATGAATATCTGGTATACCGCTACGCCCCGAAAACGTTTTACGGTAGCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑a > 8:196591/1‑140 (MQ=255)
cAGAGAATGAATATCTGGTATACCGCTACGACCCGAAAACGTTTTACGGTAGCTATGCAACAGGCTCTCTGGATAAACCGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑aa < 6:857524/140‑1 (MQ=255)
agagAATGAATATCTGGTATACCGCTACGACCCGAAAACGTTTTACGGTAGCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑aaa < 6:311845/140‑1 (MQ=255)
tgaatATCTGGTATCCCGCTACGACCCGAAAACGTTTTACGGTAGCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCCCCGGAATTTGAAAACAATACCATAAGATTTTCAGTGGCTGGCCGGG‑AAAAAGAtt > 7:407060/1‑140 (MQ=255)
tgaatATCTGGTATACCGCTACGACCCGAAAACGTTTTACGGTAGCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGAtt > 3:398765/1‑140 (MQ=255)
tgaatATCTGGTATACCGCAACGACCCGAAAACGTTTTACGGTAGCGATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAGAACAATACCATCAGAATTTCACTGGATGGCCGGC‑AAAAAGAtt > 7:649700/1‑140 (MQ=255)
tattttCTGGTATACCGCTACCCCCCGAAATCGTTTTTCGGACTCTATGCAACAGGCTCTCTGGAAAACCTGCCCATGGGGTCACCGGAATTTCAAAACACAACAATCACATTTTCACTGGCTGGCCGGT‑AAAAACAtac < 2:321280/135‑3 (MQ=255)
gaatATCTGGTATACCGCTACGACCCGAAAACGTTTTACGGTAGCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTa > 6:887811/1‑140 (MQ=255)
aatATCTGGTATACCGCTACGACCCGAAAACGTTTTACGGTAGCTATGCAACAGGCTCTCTGGATACACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTac > 6:556485/1‑140 (MQ=255)
aatATCTGGTATACCGCTACGACCCGAAAACGTTTTACGGTAGCTATGCAACAGGCACTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACAATCAGATTATCACTGGATGCCCGGG‑AAAAAGATTaa > 5:822057/1‑139 (MQ=255)
tCTGGTATACCGCTACGACCCGAAAACGTTTTACGGTAGCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGc > 5:208114/1‑140 (MQ=255)
cTGGTATACCGCTCCGACCCGAAAACTTTTTACGGTAGCTATGCAACAGGCTCGCTGGATAAACTGCCCCTGCTGTCACCGGAATTTCAAAACAATACCAGCAGATTTTCCCTGGATGGCCGGG‑AAAAAGATTCCACGcc < 4:142627/140‑1 (MQ=255)
tGGTATACCGCTACGACCCGAAAACGTTTTACGGTAGCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGCAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGccc > 6:204972/1‑140 (MQ=255)
gTATACCGCTACGACCCTAAAACGTTTTACGGTAGCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAGAGATTACACGCCCgg > 7:872407/1‑140 (MQ=255)
gTATACCGCTACGACCCGAAAACGTTTTACGGTAGCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCgg > 5:117976/1‑140 (MQ=255)
tataCCGCTACGACCCGAAAACTTTTTACGGTAGCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACACTACCATCAGATTTACACTGGAGGGCCGGT‑AAAAAGATTCCACGCCCGGt < 4:467533/140‑1 (MQ=255)
cccGCTACGACCCGAAAACGTTTTACGGTAGCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAg < 8:495998/139‑1 (MQ=255)
cccGCTACGACCCGAAAACGTTTTACGGTAGCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAAAACCATCAGATTTTCAATGGAGGGCCGGG‑AAAAAGATACCACGCCCGGTAAg < 6:514056/139‑1 (MQ=255)
cccGCTACCACCCGAAACCGTTTTACGGAAGCTATGCAACAGGCTCTCTGTATAAACTCCCCCTGCTGTCCCCGCAATTTCAAAACAATACCATCAGATTTTCACTGGATGGCCGCG‑AAAAATATACCACGCCCGGTAAg < 2:1091325/139‑1 (MQ=255)
cccGCTACCACCCGAAAACGTTTTCCGGTAGCTATGCAACCGGCTCTCTGGATAAACTGCCCCTGCTGTCCCCGGAATTTTAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAg < 4:334467/139‑1 (MQ=255)
aCCGCTACGACCCGAAAACGTTTTACGGTAGATATGCAACAGGCGCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTTAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAg < 8:716680/140‑1 (MQ=255)
aCCGCAACGCCCCGAAACCGTTTACCGGTACCTACCCAACTGGCATTCTGCATAAACCTCCCCGGCTGCCCCCGTAATTTTAAAACAATACCAACAGTTTTTCACTGGATGGCCGGG‑AAAACGATTACACGCCCGGTAAg < 6:943784/140‑1 (MQ=255)
cTACGACCCGAAAACGTTTTACGGTAGCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGt > 2:820104/1‑140 (MQ=255)
cTACGACCCGAAAACGTTTTACGGTAGCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGt > 2:766873/1‑140 (MQ=255)
cTACGACCCGAAAACGTTTTACGGTAGCTATGAAACAGGCTCTCTGGATAAAATGCCCCTGCTGACACCGGAATTTGAAAACAATAAAATCATATTTTCACTGGATTGCCGTG‑AAAAAGATTACACGCGAGGTAAGACGt > 8:167090/1‑140 (MQ=255)
aCGACCCGAAAACGTTTTACGGTAGCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGtat > 6:722181/1‑140 (MQ=255)
cGACCCGAAAACGTTTTACGGTAGCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGtatt > 1:640088/1‑140 (MQ=255)
aCCCGAAAACGTTTTACGGTAGCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGCTGGCCGGG‑AAAAAGATTACACGCCCGGTACGACGtattat > 3:657585/1‑140 (MQ=255)
cGAAAACGTTTTACGGTAGCTATGCAACAGGCTCTCGGGATAAACTGCCCCTGCTGGCACCGGAATTTGAAAACAATCCCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTcc > 4:983889/1‑140 (MQ=255)
caaaaAGTTTTACGGTAGCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGTAATTTGAAAACAAAACCATCAGTTTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCg < 7:717660/139‑1 (MQ=255)
aaaaCGTTTTACGGTAGCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCTGTAAGACGTATTATTCCGt > 6:1055509/1‑140 (MQ=255)
gCTATGCAACAGGCTCTCTGGATAACCTCCCCCTCCTTTCCCCGGAATTTTAAAACAAAACCATCCTTTTTTCCCTGGTTGGCCGGT‑AAAAATATAACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGcgggcggg < 6:34127/140‑1 (MQ=255)
gCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGcgggcggg > 4:258263/1‑140 (MQ=255)
gCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGcgggcggg > 7:299713/1‑140 (MQ=255)
gaatccAACAGGCTATCTGGATAAACTGCCCCTGCTGTCACCGTAATTTTAAAACAAAACAAACAGATTTTAACTGTATGGCGGGT‑AAAAATATTCCACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCgggg < 4:226547/135‑1 (MQ=255)
cTATGCAACAGGCTCTCTGGAAAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGTCgggg > 3:76557/1‑140 (MQ=255)
atATGAACCAGGCTCTATGTATAAACTGCCCAGGCTGGCCCCGTAATTTGAAAACACAACCAACAGATTTTACCTGGATGGCCGGG‑AAAAAGATTCCACGCCCGGTAAGACGTATTATTCCGTTATTCCGGCGGGCgggg < 4:1048461/139‑1 (MQ=255)
cAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGtt > 3:484216/1‑140 (MQ=255)
cgtctctctGAATAAACGGCCCCTGCTCTCACCGTATATATAAAACACTACCTTCATATTTTCACTGGATGGCCGGC‑AAAAATTTACCACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGa < 7:585289/137‑1 (MQ=255)
aggagatctGGAAAAACTGCCCCTTCTTTCAACGTAATTTTAAAAAAATACCATCATATTTTCACTGTATGGCCGGT‑AAAAAGATTACACGCCCTGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGa < 2:932814/134‑1 (MQ=255)
aGGCTCTCGGGATAAAATGCCCCTGCTGTCACCGGAATTTCAAAACACTCCCATCCTATTTTCACTGGATGGCCGTG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGa < 8:335420/140‑1 (MQ=255)
ggCTCTCTGGATAATATGCCCCTGCTGTAACCGGATTTTGTAATCATTACCATCTGATTTTCTATGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGAc < 8:934388/140‑1 (MQ=255)
ggCGCTCTGGATAAACTCCCCCTGCGGTCACCGTAATTTTAAAACAATACCATAAGTTTATCACTGGAGGGCCGGT‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGAc < 5:692018/140‑1 (MQ=255)
gCTCTCTGGATAAACTGCCGCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGAcc > 1:899121/1‑140 (MQ=255)
gCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGCTGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCAGTTATTCAGGCGGGCGGGGATGTTAAGAcc > 7:944647/1‑140 (MQ=255)
gCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGCCGTATTATTCCGTTATTCAGGCGTGCGGGGATGTGAATAcc > 7:85509/1‑140 (MQ=255)
tctGGATAAACTGCCCCTGCTGTCACCGGAATTAGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCAGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGtt > 8:758439/1‑140 (MQ=255)
ctGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGttt > 8:623813/1‑140 (MQ=255)
tttaTAAATTGCCACTGCTTTCACCTGAATTTTAAAACAATACAATAATATTTTCACTGGAGGGCGGGG‑AAAAATATAACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGtttt < 2:121658/137‑1 (MQ=255)
aacctcccccTGCTGCCCCCTGAATTTTAACACAATACAATCAGATTTTCACTGGAGGGCCGGT‑AAAAAGTTTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACcag < 3:998277/134‑1 (MQ=255)
aaccggCCCGTGCTGTCACCTGAATTTCAAAAAAATACCTCAATTTTTTCAGGGTTTGTCCGGG‑AAAAAGATAACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACcag < 7:520786/135‑1 (MQ=255)
aaagggCCCCTGGTGACATCGTAATTACAAAAAAAAACCATCTTTTTTTCACTGGATGGCGGGT‑AAAAAGATAACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACcag < 8:893424/135‑1 (MQ=255)
aaaCTGCCCCTGCTGACACCGTATTTTGAAAACACTACCATAAGATTTTCCGTGGAGGGCCGCC‑AAAAAGATACCACGCCCGGTAAGACGTATTATTCCGTTATTCTGGCGGGCGGGGATGTTAAGACCCGTTTTACcag < 1:692731/140‑1 (MQ=255)
aaCTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACcagc > 4:543167/1‑140 (MQ=255)
aCTGCCCCTGCGGCCACCGGAATTTGAAAACAATACCATCTGATTTTCACTGGATGGCCGGG‑AAAAACATAACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACcagca < 7:197870/140‑1 (MQ=255)
ggCCCCTTCGGTCACCGGAATTTTAAAACATTACCATCAGATTTTCACTGGATGGCCGGT‑AAAATGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGt < 6:250603/139‑1 (MQ=255)
ggCCCCGTCTGTCACAGTAATTTTAAAACAATACAAACATATTTTATCGGTATGGCCGTT‑AAAAATATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGt < 3:1017286/139‑1 (MQ=255)
gCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATATTCAATCGATGGCCGTG‑AAAAAGATTACACGCCCGGTAAGAATTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACACGTTTAACAAGCAGTa > 5:24122/1‑140 (MQ=255)
cccTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATc > 7:96365/1‑140 (MQ=255)
ccatgctgTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATc > 2:853937/4‑140 (MQ=255)
gctgTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGAAGTATTATTCCGTTATTCAGGCGGGCGGGGAAGTTAAGACCCGTTTTACCAGCAGTATCAATa > 7:602156/1‑140 (MQ=255)
gctgACACCCTAATTTGAAAAAAATCCCATCCTATTTTCAATGTATGGCCTGG‑AAATAGATTACACGCACGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATa < 4:387844/140‑1 (MQ=255)
ggTCACCGTATTTTTAAAAAATTACCATCCGATTTTCCCTGGATGGCGGGC‑AAAAAGTTTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAAc < 6:120016/139‑1 (MQ=255)
taaTTTGAAAACAATACCATCAGTTTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGaacaac < 4:406316/139‑1 (MQ=255)
ttGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACt < 8:634582/140‑1 (MQ=255)
ttaaaaCAATACAATCTGTTTTTCTCTGTTTGGCCGGT‑AAAAATATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTg < 1:292296/138‑1 (MQ=255)
tcaaaaCAATACCTTAATATTTTCACTGGATGGCCGGC‑AAAAAGAAACCACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTg < 5:957376/138‑1 (MQ=255)
tGAAAACAAAACCATCATATTTGCAGTGGCTGCCCGGT‑AAAAAGATTACCCGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTg < 7:238983/140‑1 (MQ=255)
acaaaacaaaacCATCAAATATTCAGTGCCTGCCCGGT‑AAAAATTTAACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCTTTTTACCAGCAGTATCAATAACGGAACAACCACTg < 1:965254/138‑1 (MQ=255)
aaaacaaaacCATCCTATTTTCACTGGATGGCCGTT‑AAAAATATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGca < 1:309059/140‑1 (MQ=255)
aaaaaaaaACCTTCATTTTTTCAGTGGATGGCCGGT‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGca < 7:1004153/140‑1 (MQ=255)
aaaaaaATACCATCAGATTTTCAATGGAGGGCCGGT‑AAAAAGATTCCACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGca < 6:743865/140‑1 (MQ=255)
aaaaCAATACCATCAGATTTTCACTGGAGGGCCGGC‑AAAACGATACCACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGca < 7:448175/140‑1 (MQ=255)
accAATACCATCAGATTTTCCCTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGcaca < 8:250362/138‑1 (MQ=255)
caatccaatcATATTTTAACTGTA‑GGCCGGGTAAAAATATAACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATg < 3:878908/140‑1 (MQ=255)
aaaTACCATCATATTTTCACTGTATGGCGGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATg < 3:598421/139‑1 (MQ=255)
aaaTACCATCAGATTTGCCCTGGAGGGCCGGT‑AAAAAGATACCACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATg < 1:121118/139‑1 (MQ=255)
aCCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGTTTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATGCAgg < 3:160002/140‑1 (MQ=255)
aCCATAAGATTTTCACTGTATGGCCTGT‑AAAATTATAACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATGCAgg < 1:560860/140‑1 (MQ=255)
aTCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATGCAGGTAg < 4:785254/140‑1 (MQ=255)
tCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATGCAGGTAgt > 5:617693/1‑140 (MQ=255)
tCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACAAGCAGTATCAATAACGGAACAACCACTGCACATGCAGGTAgt > 1:617546/1‑140 (MQ=255)
tCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTATACCAGCAGAATCAATAACGGAACAACCACTGCACATGCAGGTAgt > 2:40939/1‑140 (MQ=255)
tCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGAGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATGCAGGTAgt > 1:1016033/1‑140 (MQ=255)
aGATTTTCACTGCATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATGCAGGTAgtgt < 3:168970/140‑1 (MQ=255)
gATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATGCAGGTAGTGTc > 4:631285/1‑140 (MQ=255)
tCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATGCAGGTAGTGTCAGTcc > 5:462534/1‑140 (MQ=255)
aCTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATGCAGGTAGTGTCAGTCCgg > 1:499793/1‑140 (MQ=255)
ggtctgcccGGT‑AAAACGATAAGACGCCAGTTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGAGGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATGCAGGTAGTGTCAGTCCggtg < 5:772106/133‑1 (MQ=255)
gggagtgCCTGG‑AAAACTCTTACCCCCCCGGTAAGAAGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTATGACCCGTTTTACAATCAGTATCAATAACGGAACAACCACTGCACATGCAGGTAGTGTCAGTCCggtg < 8:463529/134‑1 (MQ=255)
gATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATGCAGGTAGTGTCAGTCCggtggt < 4:814950/140‑1 (MQ=255)
ggCCGGT‑AAAACTATTACACGCCCGGGAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATGCAGGTAGTGTCAGTCCGGTGGtctc < 7:76808/140‑1 (MQ=255)
ggCCGGG‑AAATATATAACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATGCAGGTAGTGTCAGTCCGGTGGtctc < 2:564041/140‑1 (MQ=255)
ggCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATGCAGGTAGTGTCAGTCCGGTGGtctc < 8:869547/140‑1 (MQ=255)
ggCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATGCAGGTAGTGTCAGTCCGGTGGtctc < 6:1035431/140‑1 (MQ=255)
ggCCGGC‑AAAAAGAGACCACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATGCAGGTAGTGTCAGTCCGGTGGtctc < 2:370471/140‑1 (MQ=255)
ggCCGCC‑AAAAAGATCACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATGCAGGTAGTGTCAGTCCGGTGGtctc < 1:359382/140‑1 (MQ=255)
gg‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATGCAGGTAGTGTCAGTCCGGTGGTCTCTGCAc < 2:675165/140‑1 (MQ=255)
gg‑AAAAACATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATGCAGGTAGTGTCAGTCCGGTGGTCTCTGCAc < 8:127743/140‑1 (MQ=255)
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ACAGAGAATGAATATCTGGTATACCGCTACGACCCGAAAACGTTTTACGGTAGCTATGCAACAGGCTCTCTGGATAAACTGCCCCTGCTGTCACCGGAATTTGAAAACAATACCATCAGATTTTCACTGGATGGCCGGG‑AAAAAGATTACACGCCCGGTAAGACGTATTATTCCGTTATTCAGGCGGGCGGGGATGTTAAGACCCGTTTTACCAGCAGTATCAATAACGGAACAACCACTGCACATGCAGGTAGTGTCAGTCCGGTGGTCTCTGCAC > NZ_CP022686/3806118‑3806394
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
