Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F13 I0 R1
|
235 |
6960.4 |
9135780 |
98.4% |
8989607 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,868,846 |
T→G |
10.3% |
T383P (ACG→CCG) |
ecpC ← |
fimbrial usher EcpC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,868,846 | 0 | T | G | 10.3%
| 312.6
/ 5.0
| 179 | T383P (ACG→CCG) | ecpC | fimbrial usher EcpC |
| Reads supporting (aligned to +/- strand): ref base T (62/91); new base G (20/4); total (84/95) |
| Fisher's exact test for biased strand distribution p-value = 1.06e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 180 total aligned reads displayed.
AAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGACCGTTA > NZ_CP022686/3868715‑3868985
|
aaGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTcc < 2:622311/140‑1 (MQ=255)
aGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGttttt > 5:198101/1‑139 (MQ=255)
tCAGACGGGTTTCACCCACCGCCTGATTAGCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGAc < 6:922636/140‑1 (MQ=255)
gccGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTGCCGGTTTACGACCAg > 7:943743/3‑140 (MQ=255)
gACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGAcc < 3:418629/138‑1 (MQ=255)
gACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAg < 6:822973/140‑1 (MQ=255)
gACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAg < 2:89157/140‑1 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCATCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGAt < 2:1116291/140‑1 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGAt < 8:192984/140‑1 (MQ=255)
ggTTTCACACACCGCCTGATTATCTTATCCATTTCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGCCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGAt < 5:735576/140‑1 (MQ=255)
gTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGa < 3:884731/138‑1 (MQ=255)
gTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATc < 5:446680/140‑1 (MQ=255)
tttCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACTTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTAACGTGTTACGCCCCGCGATcc > 5:388363/1‑140 (MQ=255)
cccaccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCCTCTTTTTCCCGTTTTCCCGCCAGCGCTCCCTATg > 6:478722/1‑140 (MQ=255)
ccaccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCatat < 4:1142675/138‑1 (MQ=255)
caccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGaa < 2:596587/140‑1 (MQ=255)
gCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCACCTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGaaac > 4:25398/1‑137 (MQ=255)
ccTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTa < 5:72894/140‑1 (MQ=255)
ccTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTa < 6:119214/140‑1 (MQ=255)
cTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCt < 3:536769/138‑1 (MQ=255)
cTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc < 6:19710/140‑1 (MQ=255)
atGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGATGCACCTGCCAGCAAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc < 5:271700/139‑1 (MQ=255)
aTTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTAGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGGTTTCCGACCAGCGATCCAGATGAAAGCTACCGc > 8:981964/1‑140 (MQ=255)
ttATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCGTATGAAAGCTACCGcc < 5:861153/140‑1 (MQ=255)
tATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGAcc > 4:942204/1‑114 (MQ=255)
tATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGc < 3:796776/138‑1 (MQ=255)
cGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTGCCCTTTTACCACCCGCGATCAATATGAAAACTAACGccccca > 6:503719/1‑138 (MQ=255)
ccATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGAACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTATCCCGTTTTACGACCAGAGATACAAATGAAAGCTACCGCCCCATTTcaa > 2:655186/1‑138 (MQ=255)
cATATCCCGTTGCCGCCCAGCTACACGTACTCCGTGCGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCt < 3:295588/138‑1 (MQ=255)
cATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCt < 3:451845/138‑1 (MQ=255)
atatCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCGTTTTCCCGGTTTGCGCCCAGCGATCCATAAGTAAGCGACCGCCCCATAACTg > 3:731588/1‑138 (MQ=255)
atCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGGTTTACGCCCAGCGATCCATATGAAAGCTAACGCCCCATATCTGCCAc > 8:607212/1‑140 (MQ=255)
atCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTGTTTGCCGGTTTACGCCCCGCGCTCCATATGACAGCTACCGCCCCATATCGGcccc > 8:109235/1‑138 (MQ=255)
cccGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCAc < 4:647065/138‑1 (MQ=255)
gTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCGTTTTGCCGTTTTCCGACAAGCGCTCCATATGAAAGCTACCGCCCCCTATCTGCCCCGcccg > 5:208119/1‑138 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGTTCGCGTGTTTTTCCCGTTTTCCGACCAGCGATCAATATTAAAGCTACCGCCGAATATCTGCCCCGCCAGc > 8:888218/1‑140 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTCCGACCAGCGCTCCATATTAAAGCTACCGCCCCATATCTGCCACGCCCGc > 2:1075126/1‑140 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTGTACCGTTTTACCACCAACGATAAAAATGAAAGCTACCGCCCCATATATGCCACGCCAGc > 1:106957/1‑140 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTGTTTCCCGTTTTCCGACCAGCGATCCATATGCAAGCTACCGCCCCCTATATGCCccgcccgc > 1:25775/1‑140 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGGTTTTTACCGTTTTACCGCCAGCGCTCCAAAATACAGCAAAAGCCCCATATAAGCCACGCCCGc > 1:1009230/1‑140 (MQ=255)
gccgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTACGACCAGCGCTCCATATGAAAGCAACCGCCCCAAAACTGCCACGCCAGc > 3:164840/1‑138 (MQ=255)
ccgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGt < 6:734019/140‑1 (MQ=255)
cgccCAGCTAACCGTACTCAGTGAGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCgg < 4:509330/138‑1 (MQ=255)
cccAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGCCCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGcc > 2:1091703/1‑139 (MQ=255)
cccAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTg < 4:910780/138‑1 (MQ=255)
cccAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGGGTTTTGCCGTTTTTCGACCAGCGCTCCATATGAAAGCTACCGCCCCATATCTGCCACCCCAGCGGGGcc > 1:64146/1‑139 (MQ=255)
cAGCTAAACGTACTCCGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCAcc < 2:773501/140‑1 (MQ=255)
cAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCAcc < 5:565653/140‑1 (MQ=255)
aaCGTACTCAGTCAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGcc < 2:99019/140‑1 (MQ=255)
aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTCCCGTTTTACGCCCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGGGCACCGACGCCACGTc > 5:835948/1‑140 (MQ=255)
aCTCAGTGAGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGGCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTc < 7:91968/140‑1 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTGTTCCGACCCGCCCGCCATATGTAACCAACCGCCCAATATCTGCCAAGACCGCGGTGCACCGACCCCCCGTccc > 8:521772/1‑140 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGGTTTCCGACCAGCGCTACATATGAAAGCTAACGCCCCATATCTGCCACGCCCGCGGTGCACCGCCGCCCCGGccc > 7:665298/1‑140 (MQ=255)
acAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACGCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGGCAGCGGTGCACCGACGCCACGTccc < 1:1167452/139‑1 (MQ=255)
cAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTACGACCAGCCATACATATTAAAGCTACCGCCCCAGATCATCCACGCCAGCGGTTCACCGCCGCCaatgcc > 3:938854/1‑133 (MQ=255)
aGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCGTTTTCCCGGTTTACGACCAGCGCTGCATATGAAAGGTAACGCCCCATATCTGCCACGCCAGCGGTGCACCGCCGCCACGGccc > 3:959822/1‑138 (MQ=255)
gTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTcccc < 3:176681/138‑1 (MQ=255)
gTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCGTTTTCCCGTTTTCCGGCCCGCGATCCATAAGAAAGCTACCGCCCCCTATCTGCCACCCCACCGGTGCACCCCCGCCCCGGcccc > 4:810067/1‑138 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGGTTTTGCCCTTTTACGCCCAGCGCTCCATATTAAAGCAACCCCCCCATATATTCCACGCCACCGGTGCCCCCACGCCCCGGACCCGGc > 7:783970/1‑140 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGCCCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCCCGCCAGCGGTGCACCGACGCCACGTCCCCGGc > 8:92860/1‑140 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATTAAAGCTACCGCCCCATATCTGACCCTCCAGCGGTGCACCGACGCCACGTCCCCGGc > 7:336472/1‑140 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGACCAGCGATCCATATTAAAGCTACCGCCCCATATCTGCCACGCCCCCGGTGGACCGACGCCACGTCCCCGGc > 8:348423/1‑140 (MQ=255)
gAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTAGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCt < 1:461433/140‑1 (MQ=255)
ccGGAGGTCGAGGCACCTGCCCGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCCGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCGaaa < 2:524576/140‑1 (MQ=255)
ccGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACTCCAGCGGTGCACCGACGCCACGTCCCCGGCTaaa < 2:396384/140‑1 (MQ=255)
ccGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTaaa < 8:791289/140‑1 (MQ=255)
ccGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTaaa < 2:147351/140‑1 (MQ=255)
ccGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTa < 4:702805/138‑1 (MQ=255)
ccGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCCCCCCATATATGCCACGCCAGCGGTGGACCCCCCCCCCGTCCCCCGCGaaa > 7:545244/1‑140 (MQ=255)
ccGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTCCGCCCAGCGATCCATATTAAAGCTACCGCCCCATATCTGCCGCGCCAGCGGTGCACCCCCGCCACGTGCCCCGCTaaa > 7:367397/1‑140 (MQ=255)
cGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTaa < 3:468953/138‑1 (MQ=255)
ggAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACa < 7:209619/140‑1 (MQ=255)
ggAGGTCGAGGCACCTGCAAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACa < 6:187188/140‑1 (MQ=255)
aGGTCGAGGCACCTGCCAGCAAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGACCAGCGAACCATATGAAAGCTACCGCCCCATATATGCCACGCCAGCGGTGCACCGCCGGCACGTCCCCGGCTAAACacg > 7:1018820/1‑138 (MQ=255)
gggcGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCt < 2:33131/137‑1 (MQ=255)
gTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTGCGCCCCGCGGTCCATATGAAAGCGACCCCCCCCTATCTGCCCCCCCCGCGGTGCCCCGCCGCCCCGGCCCCGGCGAAACCGc > 3:345857/1‑138 (MQ=255)
gcGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGACAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGGCCCCGGCTAAACAGCTTa < 7:1059555/139‑1 (MQ=255)
aGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGCCCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCCGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTg > 8:559666/1‑140 (MQ=255)
gCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTACGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCCCGTCCCCGGCTAAACAGCTTAttt > 3:736701/1‑137 (MQ=255)
ccccTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTGATCCGACCAGCGATCCATATGAAAGCGCCCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGAcc < 8:127082/138‑1 (MQ=255)
cacaTGCCAGCCAACTCTCTTTGGCTGGGCGCGTCTTTTTCCCGTTTTCCGACCAGCGAGACATATGAACGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGAcc < 1:935778/140‑1 (MQ=255)
caacTGCCAGCCAACTCTCTTTGGCTGGTCGCTTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCAATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGa < 4:654161/135‑1 (MQ=255)
cagccaACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTg < 4:946764/138‑1 (MQ=255)
cagccaACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACAAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTggg < 6:39653/140‑1 (MQ=255)
aCTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCg < 4:16801/138‑1 (MQ=255)
aCTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGtt < 1:350466/140‑1 (MQ=255)
ctctTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGc < 8:764775/140‑1 (MQ=255)
tctTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCt < 2:410274/140‑1 (MQ=255)
cTGGTCGCTTCTTTTTCCCGTTTACCGCCCAGCGATCCATCTGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGGGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCAcg < 5:101966/140‑1 (MQ=255)
cTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCAcg < 6:400158/140‑1 (MQ=255)
ggtggggTCTTTTTCCAGTTTTCCGACCAGCTATCCATATGAAAGCTACCGCCCCATATATGCCTCGCCAGCGGTGCACCGAGGCCAGGTCCCCGGCTTAACTGCTTATTGACCCGCTGGGTGCGTTTGCTGATCAcgcg < 7:544719/134‑1 (MQ=255)
gggagcgTCTTTTTCTCGTTTTCCGACCAGCGATCGATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCTCCGACGCCTCGTCCCCGGCTAAACAGCTTTTTGACCCGCTGGGTGCGTTTGCTGATCAcgcg < 2:425316/136‑1 (MQ=255)
gTCGCGTCTTTTTCCCGTTTTCCGCCCAGCGATCCATATGAAAGCTACAGCCCCATATAAGCCACGCCAGCGGTGCACCGCCGCCACGTCCCCGGCTAAACAGCGTATTGACCCGCTGGGTGCGTTTGCTGATCAcgcgc > 2:692753/1‑139 (MQ=255)
gTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGa < 8:665298/140‑1 (MQ=255)
gTCGCGTCTTTTTACCGTTTTCCGACCAGCGATACATATTAAAGCTACCGCCCCATATATGCCACCCCAGCCGTGCACCGACCCCACGTCCCCGGCTAAACAGCTTATTTACCCGCTGGGTGAGTTTGCTGATCAcgcgc > 1:863979/1‑139 (MQ=255)
gTCGCGTCGTTTTCCCGATTTCCGACCAGCGATCCATATGAAAGCTACCACCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTACCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGa < 7:556448/140‑1 (MQ=255)
cgcgTGTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCACCGGCTAAACAGCTTTTTGACCCGCTGGGTGCGTTTGCTGATCACGCGa > 4:183688/1‑138 (MQ=255)
cgcgTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGa > 3:6198/1‑138 (MQ=255)
gTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGACCGtt < 6:979545/140‑1 (MQ=255)
gTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCAGCTGGGTGCGTTTGCTGATCACGCGACCGtt < 5:121149/140‑1 (MQ=255)
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AAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGACCGTTA > NZ_CP022686/3868715‑3868985
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
