Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F35 I0 R1
|
157 |
6985.9 |
8006972 |
98.3% |
7870853 |
134.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,868,846 |
T→G |
10.3% |
T383P (ACG→CCG) |
ecpC ← |
fimbrial usher EcpC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,868,846 | 0 | T | G | 10.3%
| 314.6
/ 4.3
| 179 | T383P (ACG→CCG) | ecpC | fimbrial usher EcpC |
| Reads supporting (aligned to +/- strand): ref base T (70/85); new base G (22/2); total (92/87) |
| Fisher's exact test for biased strand distribution p-value = 1.26e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 180 total aligned reads displayed.
CCCCAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGACCGT > NZ_CP022686/3868711‑3868983
|
ccccAAGCGGCAGCGTCAGACGGGTGTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCt > 3:909687/1‑138 (MQ=255)
ccccAAGCGGAAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCAAGCTAACCCTACTCATTGAGCCGTAGGTCGACGCACATGCCATCCAACTCTCTTTGGCTGGTCGGGTcg > 6:940856/1‑137 (MQ=255)
aGCGGCAGCGTCAGACGGGTGTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTccc < 8:706589/140‑1 (MQ=255)
cGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTtcc > 3:553402/1‑138 (MQ=255)
ggCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTGTTTCCCGtt > 7:737856/1‑140 (MQ=255)
cAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGGTTTTCACGtt > 6:70529/1‑138 (MQ=255)
gCGTCAGACGGGTTTCCCCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCCCCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCGTTTTCCCgggtt > 6:14344/1‑134 (MQ=255)
gCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATACCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTTCCCtttt > 5:167355/1‑138 (MQ=255)
gCGTCAGACGGGGTTCACCCACCGCATGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTcc < 7:706147/140‑1 (MQ=255)
tCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTTAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCg < 4:401919/138‑1 (MQ=255)
taCGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCAAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGAcc < 3:373185/137‑1 (MQ=255)
gACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGAcc < 3:128995/138‑1 (MQ=255)
gACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCATCTTTTTCCCGTTTTCCGAcc < 3:452877/138‑1 (MQ=255)
gACGGGTTTCACCCACCGCATGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGAcc < 1:632584/138‑1 (MQ=255)
cGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTTCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCg < 8:422812/140‑1 (MQ=255)
cGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAg < 4:930411/138‑1 (MQ=255)
cGGGTGTCACCCACCGCCTGATTATCTTATCCATATCCGGTTGCCGCCCATCAAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGGCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAg < 3:487872/138‑1 (MQ=255)
gggtgcacccaccGCCGGATTATCGACTCCATATCCCGTTGCCGCCCAGCTAAACGGACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCg < 6:515363/133‑1 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCg < 5:961463/138‑1 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCg < 5:366459/138‑1 (MQ=255)
ggTTTCACCCACCGCATGATTAGCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCg < 5:380436/138‑1 (MQ=255)
ggTTGCACCCACCGCCTTATTATCGTATCCATATCCCGTTGCCCCCCAGCTAAACGTACTCAGGGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCg < 6:550327/138‑1 (MQ=255)
gTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGGTTTTGCCGTTTTGCGACCAGCGCTc > 7:802840/1‑140 (MQ=255)
gTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTGCCGTTTTCCGCCCAGCGATc > 8:21918/1‑140 (MQ=255)
gTTTCACCCACCGCCTGATAATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGa < 2:486762/138‑1 (MQ=255)
tCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTACGCCCAGCGATcc > 2:559873/1‑138 (MQ=255)
cccaccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCata < 1:337108/138‑1 (MQ=255)
ccaccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCT‑AACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATg < 3:942273/138‑1 (MQ=255)
cGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGc < 8:824531/140‑1 (MQ=255)
gCCTGATTATCGTATCCATATCCCGTTGCCGCCCACCTAAACGTACTCAGTGAGACGGAGGTCGAGGCACCTGCCAGCCAACTCTATTTCTCTGTTCGCGGAAGTTTAACGTTTTACGACCAGAGAGCCAaaagaaag > 4:569101/1‑138 (MQ=255)
cTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTACACGTACTCAGTGAGCCGGATGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc < 7:351500/140‑1 (MQ=255)
cTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCt < 5:660871/138‑1 (MQ=255)
cTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCt < 2:185554/138‑1 (MQ=255)
aTTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAcc < 6:653198/138‑1 (MQ=255)
ttATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCg < 4:229221/138‑1 (MQ=255)
gTATCCATATCCCGTTGCCGCCCAGCTAAACGTCCTCAGTGAGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGGCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCata < 7:939191/140‑1 (MQ=255)
gTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCCCCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTGCCGTTTTCCGACCAGCGATACATATGAAAGCTACccccccc > 4:167403/1‑137 (MQ=255)
tATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCat < 2:21964/138‑1 (MQ=255)
tCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCGCGGTTTCCGACCAGCGCTCCATATGAAAGCTACCGCCCCatat > 2:432121/1‑138 (MQ=255)
tCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCAGACCAGCGATCCATATGAAAGCTACCGCCCCATATCt > 8:648787/1‑140 (MQ=255)
cATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGc < 8:499938/140‑1 (MQ=255)
cATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCCCCCACCGCTCCCTATGAAAGCTAACGCCCCATATCt > 3:650591/1‑138 (MQ=255)
cATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCGTTTTACCGTTTTACGCCCAGCGATCCCTATGAAAGCTACCCCCCCatatat > 1:187565/1‑136 (MQ=255)
tatCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGGTTTTTCCCGGTTTACGCCCACCGATCCAAATGAAAGCTACCGCCCCCAATCTGc > 4:1020395/1‑138 (MQ=255)
cccGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCTTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCAc < 1:844520/138‑1 (MQ=255)
cccGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCAc < 5:449642/138‑1 (MQ=255)
cccGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTACCGTTTTACGCCCAGCGATCCATATGAAAGCAACCGCCCCATATCTTcccc > 3:349734/1‑136 (MQ=255)
cccGTTGCCGCCCAGATAAACGTACTCAGTGAGCCGGATGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCAc < 5:528723/138‑1 (MQ=255)
gTTGCCGCCCCGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCAAGACAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAg < 8:271438/140‑1 (MQ=255)
gTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAg < 8:286360/140‑1 (MQ=255)
gccgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCt > 6:359385/1‑113 (MQ=255)
gccgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTACGACCAGCGAAACATTTGAAAGCTACCGCCCCATATATGCCACGCCAGc > 6:275873/1‑138 (MQ=255)
gccgccCAGCTAAACGTACTCAGTGAGCAGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTGACCTTTTCCGGCCGGCGATACATATGAAAGCGACAGCACCATATCTGCCACTCAAGc > 6:970367/1‑138 (MQ=255)
ccgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTATTTTTCCGGGTTTACGACCAGCGATCCATATGTAAGCTTACGCCCCATTTAAGCCACGCCAGCggg > 8:627568/1‑139 (MQ=255)
cgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTGCCGTTTTCCGCCCCGCGATCCATATTAAACCTACCGCCCCAAATCTGCCCCGCCAGCgg > 3:1003001/1‑138 (MQ=255)
cgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCgg < 1:491963/138‑1 (MQ=255)
ccAGCTCACCGTACTCAGAGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCAc < 7:602541/140‑1 (MQ=255)
cAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGTCTGGTCGCGTCATTTTCCCGTTTTCCGCCCAGCGCTCCATATGAAATCTACCGCCCCATATCTTCCCCGACCTCGGTGcc > 3:596624/1‑137 (MQ=255)
aaaCGTACTCCGTGAGCCGGAGGTCGAGGCACCTGCCATCCAACTCTCTTTGGCTGGTCGCGTCGTTTTCAAGTTTTCCGTCCTGCGCTCCATATTAAAGAGACCGCCACCTATATGCCACCCCCTCCGTGCACCgcc > 4:84192/1‑136 (MQ=255)
accGTACTCCGTGAGCCGGAGGGCGAGGCACGTGCCAGCCAACTCTCTTTTGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGcc < 8:195265/138‑1 (MQ=255)
tACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCATCTCTCTTTGGCTGGTCGCGGATTTTTGCCGTTTTACCACCAGCGATCCCTATAAAAGCTACCGCCCCATAAATGCCCACCCCGCGGGGCCCCGACGCCAc > 3:159805/1‑138 (MQ=255)
ccTCAGTGCGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACg < 5:139034/137‑1 (MQ=255)
ccTCAGAGAGCCGGAGGTCGAGGCACCAGCCAGCCAACTCTCAATGGCTGGTCGCGTCTTATTCCCGTTATCCCACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACg < 1:566277/137‑1 (MQ=255)
actgcgtgtGCCGGAGGGCGAGGCACGTGCCAGCCAACTCTCTTTGGCTGGTCGGGTGTTTTTCCCGTTTTCCGACCCGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTc < 8:444025/135‑1 (MQ=255)
aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGGTTTTTCCCGGTTTACGCCCCGCGCTACATATTAAAGCTTCCGCCCCATATATGCCCCGCCCGCGGTGCACCGACCCCACggg > 7:526394/1‑138 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGGTTTTTCCCGTTTTCCGCCCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCCCGGccc > 7:312587/1‑140 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGGTTTCCGACCAGCGATACCTATTAAATCTACCGCCCCCTATCTACCCCACCCGCGGGTCAACCCCGCCACCGCCCCGGc > 7:414381/1‑140 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGGTTTCCAACCAGCCATCCATATGAAAGCTAACGCCCCATATATGCCCACCCAGCGGGGCCACGACGCCCCGTCCCCg > 1:978909/1‑138 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTCCGACCACCCATCCATATGAAAGCTACCGCCCCATATATTCCACGCCACCGGTGCCCCGACGCCACGTCCCCGGc > 7:388143/1‑140 (MQ=255)
aGCCGGAGGTCGAGGCACCTGCCAGCCACCTCTCTTTGGCTGGTCGCGTGGTTTTAACGTTTTACGGCCCGCGTGACATAATAAAGCTACCTCCCCAAATCTGCCCCCCCCGCCGTGCACACACGCCACGTACCCgcc > 4:507650/1‑136 (MQ=255)
aGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTACCGGTTTCCGACCCGCGATCCAAATGAAAGCTTCCGCCCCATATATGCCACCCCAGCGGTGCACCGCCGCCCCCTCCCCGGc > 1:196528/1‑138 (MQ=255)
aGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATTAAAGCTACCGCCCCCTATCTTCCACGCACGCGGTGAACCGACGCCACCGCCCCGGc > 2:116170/1‑138 (MQ=255)
aGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGc > 4:769322/1‑138 (MQ=255)
aGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTACGACCAGCGGTCCCTATGAAAGCTACCCCCCCAGATCTGCCACGCCCGCGGTGCACCGCCGCCACGTCCCCGGcga > 8:178717/1‑138 (MQ=255)
aGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTCCGACCCGCGATCCAAATTAAAGCTACCGCCCCATATCTGCCACGCCAGCGGGGCACCGCCCCCCCGGCCCCCGc > 1:534909/1‑138 (MQ=255)
aGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTACGCCCAGCGATCCATATTAAAGCTACCGCCCCATATATGCCACGCCCGCGGTGCCCCGACGCCACGTCCCCGGc > 3:266775/1‑138 (MQ=255)
ccGGAGGTGGAGTCAACTGCCAGCCATCTCTCTTTGGCTGGTCGCGTATTTTTCGCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCACGATATCTGCCACGCCTGCGGTGCACCGAAGCCACGTCGCCgtata < 6:108786/138‑5 (MQ=255)
ccGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTaaa < 7:21918/140‑1 (MQ=255)
cgAGGTCGAGGCACCTGCCAGCCAACTCTCATTGGCTTGTCGCGTCTTTTTCCCGTTTTCAGCACAGAGATACATAATAAACCAAACACCCCATAACAGCCAAGACAGCGGTTCAACGACACCACCTACCAGGcctaa > 2:250512/2‑134 (MQ=255)
aGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTGCCGTTTTCCGACCCGCGCTCCATATGAAAGCTACCGCCCCATATATGCCCCGCCAGCGGGGCCCCGACGCCACGTCCCCGGCGAAACAGc > 7:317262/1‑140 (MQ=255)
tCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCt < 6:577761/138‑1 (MQ=255)
gAGGCACCTGCCAGCCACCTCTCTTTGGCTGGGCGCGTCGTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTa < 6:319766/138‑1 (MQ=255)
aGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTGCCGTTTTACGACCAGCGATCCATATGTAAGCTACCGCCCCATATATTCCACGCCAGCGGTGCGACGACGCCACGTCCCCGGCTAAAAATCTTAt > 2:776477/1‑138 (MQ=255)
gCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCGTTTTCCCGTTTTCCGACCAGCGATCCAGATGAAAGCTACCCCCCCAAATCTGCCCCGCCAGCGGTGCACCGACCCCCCGTCCCCGGCGAAACAGCATATTg > 6:403607/1‑138 (MQ=255)
gccagccaACTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTACGACCAGCGAACCATATGAAAGCTACCGCCCCAAATAAGCCACGCCAGCGGTGGCCCGACCCCCCGTCCCCGGCGAAACAGCTTTTTGACCCGc > 1:241643/1‑138 (MQ=255)
gccagccaACTCTCTTTGGCTGGTCGCGTCGTTTTCCCGTTTTCCGACCAGCGCTCCATATGAAAGCTAACGCCCCATATCTGCCCCGCCAGCGGTGCCCCGACGCCCCGTCCCCGGCTAAACAGCTTTTTGACCCGc > 2:22144/1‑138 (MQ=255)
gacagccaACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGc < 1:782876/136‑1 (MQ=255)
caACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTg > 2:570854/1‑138 (MQ=255)
aaCTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTACGACCAGCGATCCATATGAAAACTACCGCCCCATATATGCCCCGCCCGCGGGGCACCGACGCCCCGTCCCCGGCTAAACAGCTTATTTACCCGCTGGGTGc > 5:530139/1‑138 (MQ=255)
tttattttGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATAAGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGTCGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGtt < 3:167403/134‑1 (MQ=255)
cTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCa < 2:862015/138‑1 (MQ=255)
ggTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCAcgcg < 8:277631/140‑1 (MQ=255)
gTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCAcgc < 1:339317/138‑1 (MQ=255)
gTCGCGTCTTTTTCCCGGTTTCCCACCCGCGATCCATATGAAAGCTACCGCCCCATATCTGCCCCGCCAGCTGTGCCCCGACGCCACGGAACCGGCTAAACAACTTATTGACCCGCTTGGTGAGTTTGCTGATCAcgcgc > 8:798485/1‑139 (MQ=255)
cgcgTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCAc > 4:637292/1‑63 (MQ=255)
cgcgTCTTTTTACAGTTTTACGACCAGCGATCCATATGAATGCTACCGCCACATATATGCCCCGCCAGCGGTGCCCCGCCGCCACTTCCCCCGCTAAAAATCGTAATGAACCGCTGGGGGGGTTTGCGTATcgcgcgg > 6:880237/1‑137 (MQ=255)
cgcgTC‑TTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATAACTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCCCTGGGTGCGTTTGCTGATCACGCGAc > 2:564703/1‑138 (MQ=255)
cgcgGCTTTTTCCCGTTTTACGACCCGCGATCCAAATGAAAGCTACCGCCCCATATCTGCCCCCCCCCCGGTGCACCGAAGCCACGTCCCCGGCTAAACAGCTTATTTACCCGCTGGGTGCGTTTGCTGATCACGCGa > 6:312349/1‑138 (MQ=255)
cgcgGCTTTTTCCCGGTTTCCGCCCAGCGCTCCATATGAAAGCTACCGCCCCATATCTGCCACCCCAGCGGTGCACCCACGCCACGGCCCCCGCTAAACAGCTTATTGTCCCGCTGGGTGCGTTTTGTGATCAcgcgc > 4:14705/1‑137 (MQ=255)
tCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGACCGt < 1:523029/138‑1 (MQ=255)
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CCCCAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGACCGT > NZ_CP022686/3868711‑3868983
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
