Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F2 I0 R1
|
252 |
7301.5 |
9636800 |
98.5% |
9492248 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,868,846 |
T→G |
10.7% |
T383P (ACG→CCG) |
ecpC ← |
fimbrial usher EcpC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,868,846 | 0 | T | G | 10.7%
| 321.5
/ 6.8
| 194 | T383P (ACG→CCG) | ecpC | fimbrial usher EcpC |
| Reads supporting (aligned to +/- strand): ref base T (71/96); new base G (21/5); total (93/101) |
| Fisher's exact test for biased strand distribution p-value = 2.79e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 194 total aligned reads displayed.
CCCCCCAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGACCGTT > NZ_CP022686/3868709‑3868984
|
ccccccAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTcg > 8:620518/1‑139 (MQ=255)
aaGCGGCATCGTCAGACGGGTTTCACCCACCGCCTGATTATCTTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTcc < 5:1185386/140‑1 (MQ=255)
aGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTATGTTTacc > 7:632187/1‑140 (MQ=255)
cAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGAACTCAGTGAGCCGGAGGTCGCGGCACCTGCCAGCCAACTCTCGTTGGCTGGTCGCGTCGGTTTCCCGgttt > 7:189520/1‑140 (MQ=255)
gCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTcc > 3:901988/1‑140 (MQ=255)
gCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACGCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGtttt < 2:238298/138‑1 (MQ=255)
agccGGGTGTCACCCACCGCCTGATTATCGTATCCATATCCCGGTGCCGCCCAGCTAAACGTACTCAGTGATCCGGAGGTCGAGGCACCTGCCAGCCAACGCTCTTTGGCTGGTCGAGTAGTTTTCCCGGTTTGCGAccc > 8:865150/4‑139 (MQ=255)
gACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGAcc < 2:865524/138‑1 (MQ=255)
gACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAg < 6:816842/140‑1 (MQ=255)
gACGGGTTACACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGAcc < 2:277987/138‑1 (MQ=255)
caCGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAg < 8:1098404/139‑1 (MQ=255)
cGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCg < 4:909251/140‑1 (MQ=255)
gggttCCCCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTCCTCAGTGAGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCg < 1:953420/135‑1 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCg < 1:104561/138‑1 (MQ=255)
gtctCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCAGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATc < 5:439409/137‑1 (MQ=255)
ggttCCCCCACCGCCTGATTATCGTATCCATATCCCGTGGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCGGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATc < 8:666676/138‑1 (MQ=255)
gTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGGGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATc < 4:1009604/140‑1 (MQ=255)
gTTTCACACCCCGCCTGATTATCGTATCCAGATCCCGTTGCCTCACAGCTAAACGTTCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCGGTTTTCCGACCAGCGATc < 7:1119375/140‑1 (MQ=255)
acccaccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTACGACAAGCCAACCat > 2:957040/1‑138 (MQ=255)
caccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATg < 2:916096/138‑1 (MQ=255)
ccGCCTGATTATCGTATCCATATCACGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTGTGTCCCGTTTTACTACCAGCGATACATATGAAAg > 8:1117126/1‑140 (MQ=255)
gCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAg > 2:1231111/1‑138 (MQ=255)
gCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGAACTCAGTGAGCCGGATGTCGCGCCACCTGCCAGCCACCTCTCTTTCGCTGGTCGCGGCTTTTTCACAGTTACCCACCAGACATCCAAATGAAAg > 1:83948/1‑138 (MQ=255)
cTGATTATCGTATCCATATCCCGTGGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc < 7:105445/140‑1 (MQ=255)
ttATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGcc < 6:934714/140‑1 (MQ=255)
ttATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGGACTCAGTGAGCCTGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTGCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGcc < 5:878571/140‑1 (MQ=255)
tCGTATCCATATACCGTTTCCGCCCAGCTAAGCGTACACAGTGAGCAGGAGCTCGAGACACCTGCCAGCCAACTCTCTTTAGATGGTCGCGGATTTTTAACGTTTTAAGAACAACCATGCATAATAAAGATTCCACCCCa > 5:752658/1‑140 (MQ=255)
cGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCat < 3:843906/140‑1 (MQ=255)
tATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTACCGTTTTCCGCGCAGCGATCCATATGACAGCTAACGCCCCatat > 6:825434/1‑140 (MQ=255)
tCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCatat > 2:1223775/1‑138 (MQ=255)
cATATCCGGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGc < 6:1077809/140‑1 (MQ=255)
cATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGc < 5:903639/140‑1 (MQ=255)
cATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTGCGACCCGCGATCCCAATGAAATCTACCGCCCCatatat > 1:8793/1‑136 (MQ=255)
ccggtggccgccCAGCTAAACGTACGCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCAc < 2:553946/132‑1 (MQ=255)
cccGTTTCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGc < 6:761203/140‑1 (MQ=255)
cccGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGTTCCATATGAAAGCTACCGCCCCATATCTGCCACGc < 5:954671/140‑1 (MQ=255)
cccGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGc < 8:93364/140‑1 (MQ=255)
cccGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGc < 4:724355/140‑1 (MQ=255)
cccGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGc < 7:927477/140‑1 (MQ=255)
gTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGTAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAg < 5:174976/140‑1 (MQ=255)
gTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGc < 3:299582/137‑1 (MQ=255)
gTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAg < 3:361376/140‑1 (MQ=255)
gTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAg < 4:165037/140‑1 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTGCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCCTATCTGCCACGCCCGc > 4:1030392/1‑140 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTGTTTCACGTTTTCCGACCAGCGTTCCATATGAAAGCTACCGCCCCATATCATCCACGCCAGc > 8:1061910/1‑140 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCCACCAGCGATCCATATTAAAGCTACCGCCCCATATCTGCCccgcccgc > 8:213045/1‑140 (MQ=255)
tGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCCCCTGCCAGCCAACTCTCTTTTGCTGGTCTCGTATTTTTCACGGTTTCAGACCCGCGAGCCATATGAAAGCTAACACCACAAATATGCCAcacaatcg > 7:106416/1‑133 (MQ=255)
gccgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGGAGGTCGCGGCTTTTTACCGTTTTCCTCCCAGCGATCCATATTAAAAATACCGCCCCATATATGCCCCCCCAgacg > 7:738853/1‑137 (MQ=255)
gccgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTGCCGTTTTACGACCAGCGAACCATATGAAACCTACCGCCCCAAATCTGCCACGCCAGc > 1:523680/1‑138 (MQ=255)
gccgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGCTACATATGAAAGCTACCGCCCCCTATCTGCCACGCCCGc > 2:1073286/1‑138 (MQ=255)
gccgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGACCCGCGAACCAAATGAAAGCAACCGCCCACTATCTTCCACACCatc > 2:1184648/1‑136 (MQ=255)
cccAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTGCCGTTTTGCGACCAGCGCTACATATGAAAGCTACCGCCCCCTATCTGCCACGCCAGCGGTGcc > 8:545235/1‑139 (MQ=255)
cAGCTAAACGTACTCAGGGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCa < 1:575855/138‑1 (MQ=255)
gCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGa < 4:54483/140‑1 (MQ=255)
aaaCGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGAc < 2:1051597/138‑1 (MQ=255)
aaCGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGcc < 3:675016/140‑1 (MQ=255)
aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTc < 3:573069/140‑1 (MQ=255)
aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTc < 4:1183232/140‑1 (MQ=255)
aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTATCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTc < 5:331636/140‑1 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTCACGGTTTCCGCCCACCCATCCATATGAAAGCAACCGCCCCCTAAATGCCACCCCCCCGGTGCACCGACGCCACGTc > 1:37660/1‑138 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTCAGCCCAGCCATCCATAAGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCCAAGCCCCGTccc > 6:138035/1‑140 (MQ=255)
aGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTccc > 2:355456/1‑138 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTCCCCTTTTACGACCAGCGATCCCAATGAAAGCTAACGCCCCATATATGCCACGCCAGCGGTGCACCGACGCCACGTCCCCCGc > 7:994462/1‑140 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCGTTTTCCCGGTTTACGCCCCCCCAACCATAATAAAACAACCGCCCCCAATCAGACACGCCCCCGGGGCACCGCCGCCACCTCCCCCGc > 5:1093669/1‑140 (MQ=255)
tGAGACGGAGGTCGAGGCACCTGCAAGCCAACTCTCTTTGGCTGGTCGCGGCATTTTCCCGTTTTACGACCAGCGCTCCCAATGAAAGCTACCGCCCCATATCAGACCCGCCACCCGGGCACCCACGCCACGGCCCCggg > 4:362933/1‑139 (MQ=255)
gAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCgg < 1:1223775/138‑1 (MQ=255)
aGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTCACGTTTTCCGAACAGCGATCCATATTAAAGCTACCGCCCCATAAATGCCACGCCACCGGTTGCCCCACGCCCCCTGCCCGGc > 1:159389/1‑138 (MQ=255)
ccGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTCCCGTTTTGCGAACAGCGCTCCCTATGAAAGATGCCGCCCCATATCTGCCACGCCAGCGGTGGCCCGACGGCACGTCCCCGGCTaaa > 8:234781/1‑140 (MQ=255)
ccGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTaaa < 7:103069/140‑1 (MQ=255)
cGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAAc < 4:215172/140‑1 (MQ=255)
gTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGGGTTTTCCCGGTTTACGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCCGCGGGGCACCGACGCCCCGTCCCCGGCGAAAcccc > 1:746029/1‑135 (MQ=255)
gcgtggCACCTGCCAGCCAACTCGCTTTGGCTGGTGGGGTCTTTTTCCGGTTTTCCGACAAGCGATCCATATGAAAGCTACCGCCCAATATCTGCCACGCCAGCGGTGCACCGAGGCCACGTCCCCGGCTAAACAGCTTa < 4:136596/136‑1 (MQ=255)
gcGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGTCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTa < 5:967059/139‑1 (MQ=255)
aGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGATTTTTCCCGGTTTACGCCCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGAGGTGCACCGCCGCCCCGTCCCCGGCTAAACAGCTTAttt > 5:608693/1‑139 (MQ=255)
gtcACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTACGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACAGACGCCACGTCCCCGGCTAAACAGCTTATTGa < 4:485754/138‑1 (MQ=255)
ggCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGCCCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGa < 8:722973/140‑1 (MQ=255)
cACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGa < 1:1172715/138‑1 (MQ=255)
ccTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACAGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGAcc < 2:109500/138‑1 (MQ=255)
cTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTACCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCCCCGACGCCACGTCCCCGGCTAAACAGCTTATTGACACGc > 4:1083345/1‑140 (MQ=255)
atGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTACCGTTTTACGACCAGCGATACATATTAAAGCAACAGCCCCAAATATGCCACCCCAGCGGTGCAACGCCGCCACGACCCCGGCTAAACAGCTAAATGAACCGc > 6:975269/2‑140 (MQ=255)
gccagccaACTCTCTTTGGCTGGTCGCGTGTTTTTACCGGTTTCCGCCCAGCGCACCATATGAAAGCTACCGCCCCATATCAGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACCACTTAATGACCCGCTg > 4:391770/1‑140 (MQ=255)
gccagccaACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGc < 1:452332/138‑1 (MQ=255)
gccagccaACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTg < 6:317441/140‑1 (MQ=255)
gccagccaACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTg < 4:310294/140‑1 (MQ=255)
ccagccaACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGCCCAGCGCTCCATATTAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCCGCTAAACAGCGTATTTACCCGcg > 2:423838/1‑137 (MQ=255)
gccaACTCTCTTTGGCTGGTCGCGGGTTTTTCCCGTTTTCCGACCAGCGCTCCATATGAAACCAACCCCCCCAAATATGCCACCCCCGCGCTGCCCCGACCCCCCGAACCCCGCTAAAACGCTTATATACCCCCGGGGTg > 8:701652/1‑140 (MQ=255)
aCTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGtt < 6:982887/140‑1 (MQ=255)
tctctTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTg < 6:450880/140‑1 (MQ=255)
gctctTTGGCTGGTCGCGTCTGTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGGTTg < 8:1000362/139‑1 (MQ=255)
tctTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCt < 5:814959/140‑1 (MQ=255)
ttGGCTGGTCGCGTATTTTTCCCGTTTTCCCACCAGCGATCCATATGAAATCTACCGCCCCCTATATGCCACGCCCGCGGTGCACCGACGCCCCGTCCCCGGCTAAACAGCTTATTGACCCGCGGGGTGCGGTTGCTGAt > 8:449956/1‑140 (MQ=255)
ggTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCAcgcg < 5:571618/140‑1 (MQ=255)
ggTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCAcg < 2:874767/138‑1 (MQ=255)
gTCGCGTCTTTTTCCCGTTTTCCTCCAAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTACACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGa < 5:215966/140‑1 (MQ=255)
gTCGCGTCTTTTTCCCGTTTACCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCCCGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGGTTGCTGATCACGCGa > 4:77286/1‑140 (MQ=255)
gTCGCGTCTTTTTACCGTTTTACGACCAGCGATACATATGAAAGCTACCGCCCCATATCTGCCACGCCCGCGGTGCACCGACGCCACGTCCCCGGCTAAACAACTTATTGACCCGCTGGGTGCGTTTGCTGATCTcgcgc > 8:1139881/1‑139 (MQ=255)
gcgcgTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAACGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGCCCCGCTGGGTGCGTTTGCTGATCACGCGAc < 8:1147661/139‑1 (MQ=255)
cgcgTCTTTTTGCCGTTTTCCGACCAGCGATCCATATTAAAGCTACCGCCCCATATCTGCCACGCCAGCGGGGGACAGACGCCCCGGCCCCGGCTAAACAGCGTATTGGCCCGCGGGGTGCGGTTGCGGATCAcgcgg > 2:1004597/1‑137 (MQ=255)
cgcgTC‑TTTTACCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATATGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGGTTGCTGCTCAcgcccccc > 6:470119/1‑135 (MQ=255)
gTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGTAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGACCGtt < 7:865289/140‑1 (MQ=255)
|
CCCCCCAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGACCGTT > NZ_CP022686/3868709‑3868984
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
