Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F35 I0 R1
|
304 |
9232.4 |
10623078 |
98.3% |
10442485 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,868,846 |
T→G |
10.8% |
T383P (ACG→CCG) |
ecpC ← |
fimbrial usher EcpC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,868,846 | 0 | T | G | 10.8%
| 366.4
/ 10.7
| 212 | T383P (ACG→CCG) | ecpC | fimbrial usher EcpC |
| Reads supporting (aligned to +/- strand): ref base T (73/110); new base G (25/3); total (99/113) |
| Fisher's exact test for biased strand distribution p-value = 7.10e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 212 total aligned reads displayed.
CCCCCCAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGACCGT > NZ_CP022686/3868709‑3868983
|
ccccAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCt > 4:251961/1‑138 (MQ=255)
cccAAGCGGCAGCGTCAGACGGGTTTCACCCCCCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCtttt > 7:158355/1‑140 (MQ=255)
aaGCGGCAGCGTCATACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTTCCGCCCAGCTAAAAGTACTCAGTGAGCCGGAGGTCTAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTcc < 6:1081374/140‑1 (MQ=255)
aGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTccc < 6:639877/140‑1 (MQ=255)
aGCGGCAGCGTCAGACGGGTTTCACCCACCGACTGATTATCGTATCCATATCCAGTTGCCGACCAGCTAAACCTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGAAGGTCGCGGCtttttgac > 1:1200643/1‑137 (MQ=255)
ggCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGtt < 2:276319/140‑1 (MQ=255)
aGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGttttg > 7:1158211/1‑139 (MQ=255)
tCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGAc > 6:19898/1‑140 (MQ=255)
gtcGGGATTCACCCACCGCATGATTTTCGTATGCATATCCCGTTGCCGCCCAGCAAAACGTACTCAGTGAGCCGGATGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGTCCAg < 7:1134284/138‑1 (MQ=255)
gACGGGTTTCACCCACCGCCTGATTATCGGATCCATATCCCGATGCCGCCCAGATAAACGAAATCAGTGAGCCGGAGGTAGAGGCACCGGCCAGCAACATCTCTTTGGCTGGTAGCGTAGTTTTACCGTGTTACGACAAg > 6:78521/1‑140 (MQ=255)
gACGGGGTTCACCCACCGCCTGATTATCGTATCCATATCCCGATGCCGCCCAGCTAAACGTACTCAGTGAGCCGTCGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTATCCCGTTTTCCGAcc < 4:521719/138‑1 (MQ=255)
cGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGTTCGCGTCTTTTTCCCGTTTTCCGACCAGct < 7:790981/140‑2 (MQ=255)
cGGGTGTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCg < 1:552739/140‑1 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCg < 4:1036816/138‑1 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGAt < 1:894819/140‑1 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGAt < 8:461520/140‑1 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGAt < 7:670535/140‑1 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACGCCGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGAt < 5:685637/140‑1 (MQ=255)
ggTGTCACCCAGCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAATCGTACTCAGTGAGCCGGAGGTCGAGGGACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGAt < 1:667443/140‑1 (MQ=255)
gTTTCCCCCACCGCCTGATTATCGTATCCATATACCGTTGCCGCCCAGATAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGGTTTCCGCACAGCGCTc > 2:259297/1‑140 (MQ=255)
gTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTGCCGTTTTCCGACCAGCGATc > 2:913837/1‑140 (MQ=255)
gTTTCACCCACCGCCTGATTATCGTATCCATATCCAGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTACCCTTTTCAGACCCGccaac > 8:860296/1‑136 (MQ=255)
gTTGCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATc < 8:315132/140‑1 (MQ=255)
ttCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGGTTTCCGCCCACCGagc > 3:722815/1‑136 (MQ=255)
caccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCCGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGaa < 6:1205570/140‑1 (MQ=255)
caccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGaa < 1:146479/140‑1 (MQ=255)
ccGCCTGATTATCGAATCCAGATCACGTAGCCGCCCAGCTAAACGTACTCAGTGAGCCGCAGGTCGATGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTAGTTTTCCCTGTTTCCGAGCAGCGATCCAAATGtaaa > 8:1132964/1‑139 (MQ=255)
cgtGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCTAGGCACCTGACATCCAACTCTCTTTTGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTa < 8:289920/138‑1 (MQ=255)
ccTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGc < 3:433242/138‑1 (MQ=255)
ccTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTa < 8:736615/140‑1 (MQ=255)
ccTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTa < 8:545706/140‑1 (MQ=255)
catGATTATCGTCTCAATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCTTATGAAAGCTa < 5:735036/138‑1 (MQ=255)
cTGTTTATCGTATCCATATCCCGTTCCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc < 6:444249/140‑1 (MQ=255)
cTGATTATCGTATCCATATCCGGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCGGTTTTCCGACCAGCGATCCATATGAAAGCt < 3:1039295/138‑1 (MQ=255)
cTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc < 1:950324/140‑1 (MQ=255)
gTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGACCCGCGATCCATATGAAATCTACCGccccc > 3:107234/1‑137 (MQ=255)
tCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCAGCCAGCCAACTCTCTTTGGCTGGTCGCGTATTTTAACCCTATTCCCACAACCGCACCAAATTAAACCGACcccccccaaa > 3:148092/1‑134 (MQ=255)
ccATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTg > 2:413598/1‑140 (MQ=255)
cATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCt < 3:943192/138‑1 (MQ=255)
atCCCGTTGCCGCCCAGCTACACTTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTATTCCCGTGTTCCGACAAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCAc > 7:940357/1‑140 (MQ=255)
atCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCCAATGAAAGCTAACGCCCCATATCTGCCAc > 7:864528/1‑140 (MQ=255)
atCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCAc > 8:411285/1‑140 (MQ=255)
atCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCGTTTTCCCGTTTTCCGACCCGCGAGCCCTAAGCAAGCTACCGCCCCATAACAGCCAc > 8:16679/1‑140 (MQ=255)
cccGTTGCCGCCCAGCTAACCGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCAc < 4:230781/138‑1 (MQ=255)
cccGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAATCTACCGCCCCATATCTGcgag < 4:582499/138‑4 (MQ=255)
cccGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGc < 1:1160195/140‑1 (MQ=255)
cccGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGc < 1:413598/140‑1 (MQ=255)
cccGTAGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCAc < 4:363338/138‑1 (MQ=255)
cGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTACGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCCCGccc > 2:1356785/1‑139 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGGTTTTGCCCTTTTAACACCAGCGGTCCATATGAAAGCTACCCCCCCAAAAATGCCACGCCacc > 1:588733/1‑138 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc > 2:658188/1‑117 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGc < 1:1356785/140‑1 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTCCGAACCCGGAACCATAATAAAGCTACCGCCCCAAAAAAGCCACGCCAGc > 5:949918/1‑140 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTCTTTACCGTTTTACGACCAGCGCTCCAAATGAAACCAAACTCCCCAAATATTCCCCGCCacc > 1:503883/1‑138 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTACCGGGTTACCACCCCCGATCCATAAAAAAGCAACCGCCCCAAAACAGCCACGCCacc > 7:59268/1‑138 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCAAACTCTCTTTGGCTGGGCGCGTCTTTTTCCCGGTTTCCGACCAGCGTTCCAGATGGAAGCTACCGCCCCATATCAGCCACGCCCGc > 6:1066846/1‑140 (MQ=255)
tGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAg > 3:970218/1‑138 (MQ=255)
gccgccCAGCTAAACGTACTCAGTGCGCCGGAGGTCGAGGCCCCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCGTTTTCCCGGTTTGCGCCCAGCGATCCGATTGAAAGCTACCGCCCCCTGTCTGCCACGCCCGc > 4:775230/1‑138 (MQ=255)
gccgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTACCGTTTTCCGCCCAGCGGTCCCTATGAAAGCTACCGCCCCAAATATGCCACGCCAGc > 3:1228931/1‑138 (MQ=255)
ccgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCACCTCTCTTTGGCTGGTCGCGGGTTTTTGCCGTTTTACGCCCCGCGATCCATATGAAAGCTACCCCCCCCTATATTCCCCGCCAGcc > 3:595998/1‑137 (MQ=255)
gccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGGTTTTTACCGTTTTACGACCAGCGCACCAAATTAAAACTAACGCCCCATATATGCCACGCCAGCGGt > 3:309384/1‑138 (MQ=255)
cccAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTCCCGGTTTCCGCCCAGCGCTACATATTAAAGCTAACGCCCCCTATCTGCCACCCCAGCGGGGcc > 1:322711/1‑139 (MQ=255)
gCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTACACCGa < 2:1109736/140‑1 (MQ=255)
aaCGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACg < 4:130004/138‑1 (MQ=255)
aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTc < 5:896919/140‑1 (MQ=255)
aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTc < 1:334220/140‑1 (MQ=255)
tCAGTGAGCCTGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTccc < 8:1063986/140‑1 (MQ=255)
tCAGTGAGCCGGAGGTCTAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTACAGTTTTACGAACAGAGCTACATAGGAAAGCTACCACCCCAAATATGCCGCGCCAGCCGTGCACCGACGcccacggag > 6:1305400/1‑133 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCAGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCCGCGGTGCCCCGCCGCCACGTccc > 7:443845/1‑140 (MQ=255)
aGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCCGCGCTCCCTATGAAAGCTACCGCCCCATATCTGCCACGCCCGCGGGGCCCCGACGCCACGTccc > 4:994098/1‑138 (MQ=255)
gTGAGCCGGAGGTCGCGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCACGTTTTCCGACCAGCGCTCCATATGAAAACTACCGCCCCCTATCAGCCACACCCGCGGTGCCCCGGCGCCACGTCCCCgg > 1:1010408/1‑140 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTCCCGTTTTCCGCCCAGCGATCCATATGAAAGCTACCGCCCCATATATGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGc > 2:557102/1‑140 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCGTTTTACCGTTTTCCGACCAGCGCTCCATATGAAAGCTACCGCCCCATTTCTGCAACGCCAGCGGTGCACCGACGCCAAGTCCCCggg > 2:174249/1‑139 (MQ=255)
aGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCGTTTTCCCGGTTTACGCCCAGCGCTCCATATGAAAGCTACCGCCCCATATATGCCCCGCCAGCGGTGGACCGCAGCcccggccccggc > 3:917975/1‑138 (MQ=255)
ccGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGCCCAGCGAGCCAAATGAAAGCTACCGCCCCAAATATGCCACGCCAGCGGTGCACCAACGCCCCCTCCCCGGCTa > 4:1189492/1‑138 (MQ=255)
ggAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACa < 6:1278248/140‑1 (MQ=255)
ggAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACa < 2:1155566/140‑1 (MQ=255)
gAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAAc < 4:970218/138‑1 (MQ=255)
aGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGGTTTTTACCGTTTTGCGACCAGATCTCCAAAAGAAAGCTACCCCCCCAAAACTGCCACGCCACCGCGGCCCCGCCCCCCCGGCCCCCGGGAAACAGc > 5:31882/1‑140 (MQ=255)
gTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGGTTTGCGACCAGCGGTCCATATGATAGGTACCCCCCCCTATCTGCCACGCCAGCGTGGCCCAGACTCCCCGTCCCCGGCTAAAAAGCtt > 7:518598/1‑140 (MQ=255)
gAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTa < 3:1324746/138‑1 (MQ=255)
aCCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATGCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCCCCGACGCCCCGGCCCCGGCTAAACAGCGTATTTAccc > 2:1249431/1‑140 (MQ=255)
ccTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCg < 7:32687/140‑1 (MQ=255)
catGCCAGCCAACTCTCTTTGGCTGGTAGCGTCTTTTTCCGTTTTTGCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACTCCAGCGGTGCAACGAAGCCACGGCCCCGGCTAAACAGCTTATTGAcc < 4:81007/136‑1 (MQ=255)
tGCCAGCCAACTCTCTTTGGCTGGTCGCGGCGTTTTCCCGGGTTCCGCCCCGCGCTCCATATGAAAGGTACCGCCCCATATCAGCCCCGCCCGCGGTGCCCCGCCGCCACGTCCCCGGCGAAACAGCTGATTGAACCGcg > 2:1243025/1‑139 (MQ=255)
gccagccaACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGc < 4:283735/138‑1 (MQ=255)
gccagccaACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGc < 3:251961/138‑1 (MQ=255)
gccaACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTg < 6:933430/140‑1 (MQ=255)
aCTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGtt < 5:275544/140‑1 (MQ=255)
aCTCTCTTTGGCTGGTCGCGGCTTTTTACCGGTTTACGACCAGCCAACCATATGAAAGCTACCGCCCCCTATCTGCCCCGCCACCGGTGCCCCGCCGCCACCTCCCCGGCGAAACAGCTTATTTACCCGCAGGGTGCggt > 7:821924/1‑138 (MQ=255)
tctctTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTg < 5:19898/140‑1 (MQ=255)
tctctTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTg < 1:449289/140‑1 (MQ=255)
tctTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCt < 8:216187/140‑1 (MQ=255)
tctTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCt < 7:411285/140‑1 (MQ=255)
tttGGCTGGTCGCGTCTTTTTACCGTTTTCCGACCAGCGCTCCATAAGAAAGCTACCGCCCCATATCAGCCACGCCCGCGGGGCACCGCCGCCACCTCCCCGGCTAAACAGCTTATTGACCCGCAGGGTGCGGTTGCTGa > 6:552912/1‑140 (MQ=255)
cTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCa < 3:560730/138‑1 (MQ=255)
gTCGCGGCTTTTTCCCGGTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCTTTTCTGCCACGCCAGCGGTGCACCGAAGCCTCGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGa < 5:1132157/140‑1 (MQ=255)
cgcgTGTTTTTCCCGTTTTCCGCCCAGCGATCCATATGAAAGCTACCGCCCCATATATGCCACGCCAGCGGTGCCCCGACGCCCCGTCCCCGGCTAAACCTCTTATTGACCCGCTGGGTGCGGTTGCTGATCACGCGccc > 6:111557/1‑140 (MQ=255)
cgcgTCTTTTTCCCGTTTTCCGACCAGCGATACATATGAAAGCTACCGCCCCATATCTGCCACGCCATCGGTGCACCGACGCCCCGTACCCGGCTAAACAGCTTATTGACCCGCTTGGTTCGTTTGCTGCTCACCCGAcc > 6:431195/1‑140 (MQ=255)
cgTCTTTTTCCCGTTTTCCGACCAGCGAGCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGACCGt < 5:521105/140‑1 (MQ=255)
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CCCCCCAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGACCGT > NZ_CP022686/3868709‑3868983
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
