Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F35 I0 R1 195 10216.4 8585726 98.3% 8439768 135.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NZ_CP022686 3,868,846 T→G 16.9% T383P (ACG→CCG)  ecpC ← fimbrial usher EcpC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0226863,868,8460TG16.9% 220.0 / 16.3 152T383P (ACG→CCG) ecpCfimbrial usher EcpC
Reads supporting (aligned to +/- strand):  ref base T (59/63);  new base G (24/5);  total (84/68)
Fisher's exact test for biased strand distribution p-value = 7.91e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 152 total aligned reads displayed.

CCCAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGA  >  NZ_CP022686/3868712‑3868979
                                                                                                                                      |                                                                                                                                     
  cAAGCGGCAGCGTCAGCCGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTc                                                                                                                                >  4:921590/1‑140 (MQ=255)
    cgCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTc                                                                                                                                <  6:20702/137‑1 (MQ=255)
         aaGCGTCAGCCGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCAGCCCTGTTAAACGTACGAAGTGAGCAGGAGGGCGAGGCCCCTGCCAGCCACGTCTCTTTGGCGGGTCGCGGGGTTTTCCCGtttt                                                                                                                         >  8:592783/2‑140 (MQ=255)
              tCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCCACTCTCTTTGGCTGGTCGCGGCGTTTTCCCGTGTTCCgcc                                                                                                                    >  3:821480/1‑138 (MQ=255)
              tCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGAc                                                                                                                    <  1:168034/140‑1 (MQ=255)
                 gACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTCCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAg                                                                                                                 <  7:991590/140‑1 (MQ=255)
                 gACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGAcc                                                                                                                   <  5:869160/138‑1 (MQ=255)
                 gACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAg                                                                                                                 <  2:382269/140‑1 (MQ=255)
                     ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGAt                                                                                                             <  8:221224/140‑1 (MQ=255)
                     ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGAt                                                                                                             <  2:1022431/140‑1 (MQ=255)
                      gTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCTACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGa                                                                                                              <  5:442602/138‑1 (MQ=255)
                      gTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTACGACCAGCGCTc                                                                                                            >  4:872035/1‑140 (MQ=255)
                      gTTTCACCCACCGCCTGATTATCGGATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGCCCAGCGATc                                                                                                            >  4:27312/1‑140 (MQ=255)
                        ttCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCGAAACGTACTCAGTGCGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCGTTTTCCCGGTTTCCGCCCCGCGagc                                                                                                            >  6:869160/1‑136 (MQ=255)
                         tCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCCGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTATTTGGCTGGTCGCGTCGGTTTACCGATTTGCGACCAGCGCTCCat                                                                                                         >  1:54727/1‑140 (MQ=255)
                              caccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGaa                                                                                                    <  8:666613/140‑1 (MQ=255)
                                  gCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTACGACCCGCGAAACATATGaaaa                                                                                                  >  5:108744/1‑137 (MQ=255)
                                    cTGATTATCGTCTCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc                                                                                              <  2:70106/140‑1 (MQ=255)
                                    cTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc                                                                                              <  4:1025807/140‑1 (MQ=255)
                                    cTGATTATCGGATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCCGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc                                                                                              <  4:22093/140‑1 (MQ=255)
                                       tttATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCTCCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAcc                                                                                             <  5:1021406/137‑1 (MQ=255)
                                       aTTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATAAGAAAGCTACCGc                                                                                           >  8:344488/1‑140 (MQ=255)
                                         tATCGTCTCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGccc                                                                                         <  1:912510/140‑1 (MQ=255)
                                             gTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCAAACTCTCTTTGGCTGGTCGCGTGTGTATAACGTTTTGCGCCCAGAGATCCCTATGAAACCTAAccccccc                                                                                       >  6:171483/1‑137 (MQ=255)
                                              tATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGGGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTATTTAGCGTTTTACGACCAGCGATCCAAATGAAAGCAACCGCCCCaaaa                                                                                    >  8:872820/1‑137 (MQ=255)
                                                  cATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTAAGAACAGCGATACATATGAAAGCTAACGCCCCATATCt                                                                                  >  5:595583/1‑138 (MQ=255)
                                                     atCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTGCCGTTTTACGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCAc                                                                             >  1:756913/1‑140 (MQ=255)
                                                       cccGTTGCCGCCCAGCTAACCGTACTCAGTGAGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGc                                                                           <  4:390242/140‑1 (MQ=255)
                                                       cccGTTGCCGCCCACCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCTTATTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGc                                                                           <  7:660908/140‑1 (MQ=255)
                                                       cccGTAGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCAc                                                                             <  6:193110/138‑1 (MQ=255)
                                                       cccGGTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGCGGGCGAGGCACCTGCCAGACTACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAATCTACCGCCCCATATCTGCCAc                                                                             <  5:871638/138‑1 (MQ=255)
                                                          gTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAg                                                                        <  1:1062380/140‑1 (MQ=255)
                                                          gTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGGGTTTTCCCGTTTTCCGGCCCCCGATCCATATGAAACCAACCGCCCCAAAACTGCCACCCCac                                                                        >  7:469611/1‑139 (MQ=255)
                                                          gTTGCCGCCCAGCTAAACGTACTCAGAGAGCCGGAGGTCGATGCACCTGCCAGCCAACTCTCTTTGGCAGGTCGCGGCATTTTACCGTTTTAAGCCCAGCCCTCCATATGAAAGCTACCCCCCCCTAACTTcccaccccc                                                                        >  1:202119/1‑133 (MQ=255)
                                                           ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCCGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTCCCGTTTTCAGACCCGCGAGCCATATGACAGCTACAGCCCCAAATCTGCCACGCCCGc                                                                       >  3:283077/1‑140 (MQ=255)
                                                           ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAg                                                                        >  1:566591/1‑139 (MQ=255)
                                                           ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAg                                                                        <  2:566591/139‑1 (MQ=255)
                                                           ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTACCACCAGCGATACAAATGAAAGCTACCCCCCCATATATGCCACGCCAGc                                                                       >  2:136724/1‑140 (MQ=255)
                                                           ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTATCTTTGGCTGTTCGCGTCTTTTTACCGTTTTCCGACCAGCGATACATATGAAAGATACCCACCCAAAAATGCCACGCCAGc                                                                       >  4:442934/1‑140 (MQ=255)
                                                           ttGCCGCCCAGCTAAACCTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGAGTCTTTTTTGCGTTTTACGCGCAGCGAGCCAAATTAACGCTAACGGCCCCTATCAGACACAcccga                                                                       >  8:43127/1‑137 (MQ=255)
                                                             gccgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTCCCGGTTTCCGCCCCGCGATCCCTATGAAAGCAACCGCCCCATATCTGCCccgcccgc                                                                       >  6:190445/1‑138 (MQ=255)
                                                             gccgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCgg                                                                     <  7:384775/140‑1 (MQ=255)
                                                             gccgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGATGGTCGCGTCTTGTTACCGTTTTCCGACCCGCGATCCATATGAAAGCTACAGACCCATATCTGCCACGCCacc                                                                       >  6:464554/1‑136 (MQ=255)
                                                              ccgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTGCCGTTTTCCGCCCACCGATCCCTATGAAACCTACCGCCCCCTATCTGACCCGCCAGCggg                                                                    >  1:349386/1‑139 (MQ=255)
                                                               cgccCAGCTAAACTAACTCAGAGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGAGTCTTTATCCCGTTTTCCTACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCggag                                                                   <  1:670029/140‑3 (MQ=255)
                                                                   cAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTACCGTTTTCCGACCAGCGATCCATATGAAAGCTTCCGCCCCATATCTGCCACGCCAGCGGTgaccc                                                               >  8:248779/1‑136 (MQ=255)
                                                                     gCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGa                                                             <  7:930834/140‑1 (MQ=255)
                                                                     gCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTATCTTTGGCTGGTAGGGGCGTTTTGCCGTTTTCCGACCCGCGATCCTTATGAAAGATAACGCCCCATATCTTCCACGCCGGCGGTGCaac                                                               >  6:867746/1‑136 (MQ=255)
                                                                         aaCGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCGTTTTACCGGTTTACGACCAGCGCGCCAAATGAAAGCTACCGCCCCATATAATCCACCCCCGCGGTGGACCCACGcc                                                         >  1:1111800/1‑140 (MQ=255)
                                                                          aCGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGc                                                          <  5:428428/138‑1 (MQ=255)
                                                                              aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACg                                                      <  5:659689/138‑1 (MQ=255)
                                                                              aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTc                                                    <  1:750117/140‑1 (MQ=255)
                                                                              aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTc                                                    <  8:582734/140‑1 (MQ=255)
                                                                              aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTc                                                    <  7:526214/140‑1 (MQ=255)
                                                                               cTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTGTTCCCGTTTTCCGACCAGCGATCCAAATTCAAGCTCCCCCCCCAAATCTGCCCCGCCAGCCGGGCCCCGACGCCCCGTcc                                                   >  4:78332/1‑140 (MQ=255)
                                                                                tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTCCCGTTTTCCGCCCAGCGATCCATATGAAAGCTACAGCCCCATATCTGCCACACCATCGGTTCACCGACGCCCCGTccc                                                  >  8:136953/1‑140 (MQ=255)
                                                                                tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGCTCCATATGAAAGCAAACGCCCCATATCTGCCACGCCAGCGGTGCTCCGACGCCCCGta                                                    >  6:946388/1‑137 (MQ=255)
                                                                                tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGTATTACGACCCGCCATCCATATGAAACATAACGCCCCAAATCTGCCAAGCCAACCGTGCACCGACGCCACCTccc                                                  >  1:250751/1‑140 (MQ=255)
                                                                                tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCGTTTTCCCGGTTTCCGACCCGCGCTCCAAATGAAAGCAACCGCCCCATATAAGCCCCGCCACCGGTGCACCGACGCCACCTccc                                                  >  3:207025/1‑140 (MQ=255)
                                                                                tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGCCCCGCGCTCCCTATGAAAGCTACCGCCCCATATCAGCCCCGCCAGCGGTGCCCCGACGCCCCGGccc                                                  >  3:607774/1‑140 (MQ=255)
                                                                                tCAGTGAGCCGGAGGTCGAGGCACCTGACAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTccc                                                  <  4:740603/140‑1 (MQ=255)
                                                                                tCAGTGAGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTccc                                                  <  2:20492/140‑1 (MQ=255)
                                                                                  aGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCGTTTTCCCGGTTTCCGACCACCGATACATATGAAAGCGACCGCCCCATATATGCCCCGCCCGCCGGGCCCCCACGCCACGGccccc                                                >  1:9179/1‑139 (MQ=255)
                                                                                  aGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTATCTTTGGCTGGTCGCGTGGTTTTGCCGTTTTCCGTCCAGCGAGCCCAATGACAGCTACCGCCCCCTATCTGCCCCGCCCGCCGTGCCCCGCCgccccggccccg                                                >  3:83798/1‑140 (MQ=255)
                                                                                    tgcgCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGGTTTTTACCCGTTTACGACCCGCGATGCATATGAAAGCTACCGCCCCCTATCAGCCCCGCCAGCGGGGCCCCGCCGCCACGTCCCCggg                                              >  7:436688/4‑139 (MQ=255)
                                                                                    tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTGCCGTTTTGCCACCAGCGCTCCATATGAAAGCTACCGCCCCAAATATTCCACGCCCGCCGTGCACCGACCCCACCTACCCGGc                                              >  8:365270/1‑140 (MQ=255)
                                                                                    tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTACGACCAGCGATCCAAATGAAAGCTACCGCCCCAAATATGCCACGCCCCCGGTGCCACGACGCCACGTCCCCGGc                                              >  1:676808/1‑140 (MQ=255)
                                                                                    tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCGTTTTCCCGTTTTACGACCAGCCATACAAATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCCAACCCCCGTACCCGGc                                              >  3:555517/1‑140 (MQ=255)
                                                                                    tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGCCCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCCCGCCAGCGGTGCACCGACGCCACTGCCCCCGc                                              >  2:299842/1‑140 (MQ=255)
                                                                                      aGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTACGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGc                                              >  5:903637/1‑138 (MQ=255)
                                                                                        ccGGAGGTCGAGGCACCTGCCAGCCTACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTaaa                                          <  7:144723/140‑1 (MQ=255)
                                                                                        ccGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTa                                            <  6:662910/138‑1 (MQ=255)
                                                                                        ccGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGGTGTTTCCCGGTTTACGGACCGCGAGCCAAATGAAACCGACCGCCCCCAATATGCCACGCCAGCGCGGCACCGCCGCCCCCGCCCCGGCGaaa                                          >  7:381562/1‑140 (MQ=255)
                                                                                            aGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCGTTTTACCGTTTTCCGACCAGCGATCCATATGAAAGCAACCGCCCCAAATCTGCCACGCCAGCCGTGCCCCCCCGCCACGGCCCCGGCTAAACacc                                      >  2:251466/1‑138 (MQ=255)
                                                                                               cggAGGCACCTGCCAGCCAACTCACTTTGGCTGGTCGCGTCTTTTTACCGTTTACCGACCAGCGATCCATATGAACGCTACCGACCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTa                                   <  1:705119/138‑1 (MQ=255)
                                                                                                cGAGGCAACTGCCAGCAAACTCTCTTTGGCTGGTCGCGTATTTTTCACGTTTTCCGACCAGAGCTCCAAATGAAAGCTACCGCCCCAATACTTACACGCCAGCCGAGAACAGACCACCCGTACCCGGCAAAACAGCTTAt                                  >  4:620332/1‑140 (MQ=255)
                                                                                                 gAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTTCACCGACGCCACGTCCCCGGCTAAACAGCTTAtt                                 <  8:702801/140‑1 (MQ=255)
                                                                                                 gAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTAtt                                 <  4:531618/140‑1 (MQ=255)
                                                                                                  aGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGGTTTTGCCGGTTTACGACCAGCGCTCCATATGAAAGCTACCCCCCCATATCTGCCACGCCAGCGGTGCCCCGCCGCCCCGGCCCCGGCGAAACAGCTTAttt                                >  7:225818/1‑139 (MQ=255)
                                                                                                  aGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGCTCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGGGCACCGACGCCCCGTCCCCGGCTAAACAGCTTAttt                                >  3:4161/1‑139 (MQ=255)
                                                                                                  aGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTACGACCAGCGATCCATATGAAAGCTACCCCCCCATATATGACACGCCACCGGTGCGCCGACGCCACGTACCCGGCGTAACAACTTAttt                                >  4:669436/1‑139 (MQ=255)
                                                                                                   ggCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTAtt                                 <  6:690240/138‑1 (MQ=255)
                                                                                                   ggCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGa                               <  3:322964/140‑1 (MQ=255)
                                                                                                      aCCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGACCCGCGATCCATTTGAAAGCAACAGCCCCGTATATGGCACGCCCCCGGGGCACCGCCGCCCCGTCCCCGGCTTAACAGCTTATTGAccc                            >  8:422517/1‑140 (MQ=255)
                                                                                                          gccagccaACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTg                        <  7:472369/140‑1 (MQ=255)
                                                                                                          gccagccaACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGAGCCATATGAAAGCTCCCGCCCCATATCTGCCACGCCAGCGGTGCGCCGCCGCCCCGGCCCCGGCGAAACAGCTTCTTGACCCGcgg                        >  4:821820/1‑138 (MQ=255)
                                                                                                            catccaACTCTCTTTGGCTGGTGGCGTCTTTTTCCCGTTTGCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAACCAGCTTATTGACCCGCTggg                      <  8:155019/137‑1 (MQ=255)
                                                                                                            cagccaACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTggg                      <  7:365270/140‑1 (MQ=255)
                                                                                                                  aCTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGtt                <  7:798584/140‑1 (MQ=255)
                                                                                                                    tctctTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTg              <  7:435467/140‑1 (MQ=255)
                                                                                                                     ctctTTGGCTGGTCGCGTGTTTTTCCCGTTTTCCGCCCAGCGCTCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGttt               >  6:954539/1‑138 (MQ=255)
                                                                                                                      tctTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCt            <  2:32247/140‑1 (MQ=255)
                                                                                                                      tctTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCt            <  4:555517/140‑1 (MQ=255)
                                                                                                                      tctTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCt            <  7:527666/140‑1 (MQ=255)
                                                                                                                      tctTTGGCTGGTCGCGTCTTTTTCCCGTGTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCt            <  1:1077516/140‑1 (MQ=255)
                                                                                                                          tGGCTGGTCGCGTCTTTTTACCGTTTTACGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACCCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGa          >  6:529688/1‑138 (MQ=255)
                                                                                                                             atGGTCGAGTCTTTTTCCCGTTTTCCGACCAGAGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCATCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTAATGACCCGCTGGGTGCGTTTGCTGATCAcg     <  4:119267/139‑1 (MQ=255)
                                                                                                                               ggTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCAcg     <  5:935450/138‑1 (MQ=255)
                                                                                                                                gTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAATCTAACGCCCCATATATGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAAAGGCTTATTGACCCGCTGGGTGGGTTTGCTGAAGAcgcgc  >  2:1001781/1‑139 (MQ=255)
                                                                                                                                gTCGCGTCTTTTTCCCGTTTTACGACCAGCGCTCCATATGAAAGCTACCGCCCCATATATGCCACGCCAGCGGTGCACCGCCGCCACGTCCCCGGCTAAACACCTTATTGACCCGCTGGGTGCGTTTGCTGATCAcgcgc  >  2:14339/1‑139 (MQ=255)
                                                                                                                                      |                                                                                                                                     
CCCAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGA  >  NZ_CP022686/3868712‑3868979

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A