Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F2 I0 R1
|
122 |
5985.5 |
7364544 |
98.3% |
7239346 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,868,846 |
T→G |
13.6% |
T383P (ACG→CCG) |
ecpC ← |
fimbrial usher EcpC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,868,846 | 0 | T | G | 13.6%
| 279.4
/ 9.0
| 160 | T383P (ACG→CCG) | ecpC | fimbrial usher EcpC |
| Reads supporting (aligned to +/- strand): ref base T (56/78); new base G (23/3); total (79/81) |
| Fisher's exact test for biased strand distribution p-value = 9.03e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 162 total aligned reads displayed.
CCCCCCCAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑CCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGACC > NZ_CP022686/3868708‑3868981
|
cccccccAAGCGGCAGCGTCAGACGGGTTTCCCCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGtg > 7:435378/1‑139 (MQ=255)
ccccccAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCt > 2:649644/1‑140 (MQ=255)
caGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCttttt < 6:656749/137‑1 (MQ=255)
cAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGGGTTTTCCCGgttt > 4:615617/1‑140 (MQ=255)
aGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGCGGCACCTGCCAGCCAACTCGCTTTGGCTGGTCGCGTCTTTTTCCCGattta > 8:591897/1‑139 (MQ=255)
aGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTGCCGttttg > 3:97616/1‑139 (MQ=255)
gACGGGATTCAACCACCGCCAGATTATCTTATCCATATCCCGGTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAg < 3:696728/140‑1 (MQ=255)
cGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCg < 3:142024/140‑1 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATTTCCCGTTGCCGCGCAGCTAAACGTACTGAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCGTTTTCCCGTTTTCCGACCAGCGAt < 8:182980/140‑1 (MQ=255)
gTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATc > 7:223620/1‑140 (MQ=255)
gTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGACCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGGCGCGTCTTTTTCCCGTTTTCCGAACAGCGATc < 8:102037/140‑1 (MQ=255)
ccaccGCATGATTATCGTATCAATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGa < 1:889259/140‑1 (MQ=255)
ccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTGCCGTGTTCCGACCAGCGATCCATATGTAAg > 2:844174/1‑140 (MQ=255)
ccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTCACGATTTACGACCCGCGATCCATATGaaac > 1:406761/1‑139 (MQ=255)
ccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTGCGACCATCGATCAAAATTaaaa > 1:840638/1‑139 (MQ=255)
cGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGACGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGTCTGGTCGCGGATTTTTACCGGTTTGCGCCCCTCGATCCATATTAAAga > 1:681166/1‑139 (MQ=255)
cGCCTGATTATCGTATCCATATCCCGTTGCCGACCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCATATCTCTTTGGCTGGGCGCGTGTTTTTCCCGGGTTACGACCAGCGCTCCgtattgaatc > 7:574095/1‑134 (MQ=255)
gCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCGTTTTCCCGTTTTCAGCCCAGAGATCCATATGAAAg > 6:141115/1‑138 (MQ=255)
ccTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGc < 6:608303/138‑1 (MQ=255)
ccTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTa < 8:752737/140‑1 (MQ=255)
ccTGATTATCGAATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGc < 6:770001/138‑1 (MQ=255)
cTGTTTATCGTATCCATATCCCGTTGCCGCCCTGCTTAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc < 1:56820/140‑1 (MQ=255)
cTGATTATCGTATCCATATCCCGTTGGCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc < 8:292730/140‑1 (MQ=255)
cTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGCGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc < 8:829479/140‑1 (MQ=255)
cTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc < 1:575814/140‑1 (MQ=255)
tGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCCCCTGCCAGCCAACACTCTTTGGCTGGTCGCGGCTGTTTGCCCGTTTACGACCCGCCGACCAAATGAAAGCTa > 5:196323/1‑138 (MQ=255)
tttATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTGAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCATCTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCGATATGAAAGCTACCGc < 1:532595/139‑1 (MQ=255)
aTTATCGTATCCATATCCCGTTGCCGCACAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCCTCCAACTCTCTTTGGCTGGTCGCGTATTTTTACAGTTTTACGAACAGCGCGCCCTATGAAAGCAAACGc > 7:542169/1‑140 (MQ=255)
ttATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGcc < 1:194268/140‑1 (MQ=255)
tATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCatat < 3:615617/140‑1 (MQ=255)
tCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTGTGGCTGGTCGCGTCTTTTTCCCGTTTTACGACCATCGCTCCAAATGAAAGCAACCACCCCatat > 5:549566/1‑138 (MQ=255)
atCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCATCCACCACTCTTTGGCTGGTCGCGTCGTTTTACCGTTTTCGCTCCCGCGATCAAAAAGAAAACGACCACCCCaaataagcccc > 3:366347/1‑133 (MQ=255)
atCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGGTGTTTGCCGTTTTCAGGCCCGCGCTGCCAATGTCCGCAGCCGCCCCCTATCTgaccc > 3:223056/1‑136 (MQ=255)
ttGCCGCCCAGCTAAACGTTCTCAGTGAGCCGGAGGTCGCGGCACCTGCCAGCCACCTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTGCGACCCGGCATACATATGAAAGCAACCGCCCCATATCTGCCACCCCCGc > 7:130750/1‑140 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTCCCGATTTCAGACCCGCGAGCCATATTTAAGCTACCGCCCCATATCTGCCACGCCAGc > 8:329310/1‑140 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGc > 3:554098/1‑140 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGGTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGc > 8:550186/1‑140 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTACCGGTTTACGACCAGCGCTACAAATGAAAGCTACCGCCCCATATCTGCCACCCCAGc > 1:242396/1‑140 (MQ=255)
gccgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCgg < 2:836699/140‑1 (MQ=255)
gccgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCCTTTTACCCATTTACGACCAGCGATCCAAAAGAAAGCAACCGACCCCAATCTTCCccgcccgc > 5:253939/1‑138 (MQ=255)
ccgCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCAcc < 3:498116/138‑1 (MQ=255)
cAGCTAAACGTACTCAGTGCGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCAcc < 4:213186/140‑1 (MQ=255)
cAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCAcc < 4:824437/140‑1 (MQ=255)
cAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCAcc < 8:223620/140‑1 (MQ=255)
tAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCAGAGCCGCGATCCAAATGAAAGCTACCGCCCCCTATCGTCCACGCCCGCGGTGCACCgc > 5:373332/1‑137 (MQ=255)
aaCGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGcc < 1:13029/140‑1 (MQ=255)
aCTCAGTGAGCCGGAGGTCGAGGCACGTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACg < 5:47057/138‑1 (MQ=255)
aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATc < 3:381459/84‑1 (MQ=255)
aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATc > 4:381459/1‑84 (MQ=255)
aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑c < 1:705772/140‑1 (MQ=255)
aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAAAGAGAGTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGCCGCCACGT‑c > 4:21081/1‑140 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑ccc > 7:584696/1‑140 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGACACGT‑ccc < 8:255687/140‑1 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTATTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑ccc < 1:734610/140‑1 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCACGGTTTCCGACCAGCGATCCAAATGAAAGCTACCGCCCCCAATCTGCCACGCCCCCGGTGCCACGCCGCCACGT‑c > 6:497860/1‑138 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGACAACTCTCTTTGGCTGGTCGCGTATTTTTCACGTATTACGCCCACCGATCCCTAAGAAAGCAACCGCCCCAAATCAGCCCACCCCGCGGGGCACCGACGCCCCGT‑acc > 2:208504/1‑140 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGCCCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCCCGCCCGCGGTGCACCCACGCCACGT‑ACCCGGc > 3:685128/1‑140 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTGCCGTTTTGCGACCAGCGATCCATATGAAAGCTACCGCCCCATATATGCCACGCCCGCGGGGCACCGCCCCCACGT‑CCCCGGc > 8:100798/1‑140 (MQ=255)
aGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑CCCCGGCTa < 4:905831/140‑1 (MQ=255)
aGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCAAAATGAAAGCTACCTCCCCATATCTGCCCCCCCAGCCGTGCACCGACGCCACGA‑CCCCCGc > 6:841261/1‑138 (MQ=255)
aGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCCTTTTACGACCAGCGATCCATATGAAAGCTAACGCCCCATATCTGCCACGCCCCCGGGGCACCGCCGCCCCGTACCCCgg > 6:772549/1‑138 (MQ=255)
aGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCGTGTTCCCGGTTTCCGCCCAGCGATCCATAAGAACGCTACCGCCCCCAATCAGCCACGCCCGCGGGGCCCCGACGCCACGT‑CCCCGGc > 5:56518/1‑138 (MQ=255)
gCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑CCCCGGCTaa < 7:397286/140‑1 (MQ=255)
ccGGAGGTCGTGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑CCCCGGCTaaa < 3:791072/140‑1 (MQ=255)
ccGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCCACCAGCGATCCATTTGAAAGCTACCCCCCCATATCTGCCCCGCCCGCGGTGCACCCACGCCCCGG‑CCCCGGCTa > 6:567937/1‑138 (MQ=255)
cGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑CCCCGGCTAAAc < 2:442222/140‑1 (MQ=255)
ggAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑CCCCGGCTaaa < 5:813389/138‑1 (MQ=255)
aGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCCGCGCTCCATATGAAAGCTACCGCCCCATATCTGCCACGCCCGCGGTGGACCGCCGCCCCGT‑CCCCGGCTAAACAGc > 2:5120/1‑140 (MQ=255)
aGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCCGCGGTGCACCGACGCCACGT‑CCCCGGCTGAACAGc > 4:864094/1‑140 (MQ=255)
ggTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGGCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑CCCCGGCTAAACAGCt < 3:457571/140‑1 (MQ=255)
gTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTGCCGGTTTGCGACCCGCGATCCAAATTAAAGCTAACGCCCCATATATGCCACCCCCCCGGGGCCCCCCCGCCACCT‑GCCCCGCGaaaaaac > 5:564292/1‑134 (MQ=255)
tCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCTTTTTCCGACCAGCGATCCATATGAAAGCTACCGGCCCATATCTGCCACGCCAGCGGTGCACCGACTGCACGT‑CCTCTGCTAAACAGCTTa < 8:233838/140‑1 (MQ=255)
cGAGGCACCTGCCAGCCAACTCTCTTTGGCT‑GTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑CCCCGGCTAAACAGCTTAtt < 4:654202/140‑1 (MQ=255)
gAGGCACCTGCCAGCCTACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTATCCGACCAGCGATCGATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑CCCCGGCTAAACATCTTAtt < 4:391412/140‑1 (MQ=255)
aGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATGCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑CCCCGGCTAAACAGCGTAttt > 4:289077/1‑139 (MQ=255)
aGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑CCCCgg < 3:765374/125‑1 (MQ=255)
aGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑CCCCgg > 4:765374/1‑125 (MQ=255)
ggCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCTCCGACTAAAATT‑AACCGGCTAAACAGCTttttta < 4:572354/140‑3 (MQ=255)
ggCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑CCCCGGCTAAACAGCTTATTGa < 1:314315/140‑1 (MQ=255)
ggCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑CCCCGGCTAAACAGCTTATTGa < 7:567318/140‑1 (MQ=255)
ccTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑CCCCGGCTAAACAGCTTATTGAcc < 6:285656/138‑1 (MQ=255)
ccTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑CCCCGGCTAAACAGCTTATTGACCCg < 3:362160/140‑1 (MQ=255)
ccTGCAAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCAGTGTTCCGACCAGCGATCAATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCTCGT‑CCCCGGCTAAACAGCTTATTGACCCg < 7:251622/140‑1 (MQ=255)
cTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCatat < 1:229695/82‑1 (MQ=255)
cTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCGTTTTACCGGTTTCCGCCCAGCGATCCATATGAAAGCTACCGCCCCCTAACTGCCACGCCAGCGGTGCACCCCCCCCACGT‑CCCCCGCGAAACATCTTATTGACCCGc > 7:824450/1‑140 (MQ=255)
cTGCCACCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTACGCCCAACGATCCATATGAAAGCTACCGCCCCAAATATGCCCCCCCACCCGTGCACCGACCCCCCGT‑CCCCCGCGAAACAGCGTATTGACCCGc > 1:773539/1‑140 (MQ=255)
gccagccaACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑CCCCGGCTAAACAGCTTATTGACCCGc < 6:188515/138‑1 (MQ=255)
gccaACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCAAATGAAATCTACCGCCCCATATCAACCACGCCAGCGGTGCACCGCCCCCACGT‑CCCCGGCTAAACACCTTATTTACCCGCTGGGTg > 2:427782/1‑140 (MQ=255)
ccaACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTACGACCAGCGATACATATGAAAGCTAACGCCCCATATCTGCCACGCCACCGGTGCACCGACGCCAAGT‑ACCCGGCTAAACAGCATATTGACCCGCAGGGt > 6:885854/1‑138 (MQ=255)
caACTCTCGTTGGCTGGTCGCGGCGTTTTCCCGTTTTCCGACCAGCGATCCATATTAAAGCTACCGCCCCATATCTGCCACGCCAGCGGGGCACCCACGACACGT‑CCCCGGCTAAACCGCTTATTGTCCCGCGGGCTg > 6:638764/1‑138 (MQ=255)
tctTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑CCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCt < 1:449695/140‑1 (MQ=255)
tttGGCTGGTCGCGTCTTTTTCCCGTTTTCCGCCCAGCGATCCATATGAAAGCTACCGCCCCATATATGCCCCGCCCGCGGGGCACCGACGCCACGT‑CCCCGGCGAAACAGCTTATTGACCCGCTGGGTGGGTTTTCTGa > 2:711097/1‑140 (MQ=255)
tttGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCCCGCCAGCGGTGCCCCGACGCCACGT‑CCCCGGCTAAACAGCTTATTGACACGCTGGGTGCGTTTGCTGa > 4:568586/1‑140 (MQ=255)
tGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCACCGATCCATATGAAAGCAACCGCCCCATATCAGCCACGCCCCCGGGGCCCCGACGCCACGG‑CCCCGGCGAAACAGCTTATTGACCCCCTGGGTGCGTTTGCTgg > 6:273365/1‑137 (MQ=255)
ggCTGGTCGCGGCTTTTTCCCGTTTTCCGCCCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGCCGCCCCGT‑CCCCGGCTAAAAAGCTTATTTACCCGCTGGGTGCGTTTGCTGAt > 6:122100/1‑138 (MQ=255)
cTGGGCGCGGCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACTT‑CCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCAcg < 7:822552/140‑1 (MQ=255)
gTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑CCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCAcgc < 6:52368/138‑1 (MQ=255)
gTCGCGTCTTTTTCCCGTTTTACGACCAGCGCTCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGGCGCCACGT‑CCCCGGCTTCACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCAcgcgc > 8:515068/1‑139 (MQ=255)
gTCGCGTCTTTTTACCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑CCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGa > 8:847896/1‑140 (MQ=255)
cgcgGCTTTTTACCCTTTTCCGACCAGCGATCCATATGAAAGCAACCGCCCCATATCTGACACGCCAGCGGTGCACCGCCGCCCCGT‑ACCCGGCGAAACAGCTTATTGTCCCGCTGGGTGCGGTTGGTGATAACGCGAcc > 2:113584/1‑140 (MQ=255)
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CCCCCCCAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGT‑CCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGACC > NZ_CP022686/3868708‑3868981
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
