Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F36 I0 R1
|
179 |
8076.5 |
8499890 |
98.3% |
8355391 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,868,846 |
T→G |
14.4% |
T383P (ACG→CCG) |
ecpC ← |
fimbrial usher EcpC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,868,846 | 0 | T | G | 14.4%
| 259.5
/ 9.4
| 169 | T383P (ACG→CCG) | ecpC | fimbrial usher EcpC |
| Reads supporting (aligned to +/- strand): ref base T (62/78); new base G (22/7); total (84/85) |
| Fisher's exact test for biased strand distribution p-value = 2.15e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 169 total aligned reads displayed.
CCCCCCAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGACCGTT > NZ_CP022686/3868709‑3868984
|
ccccccAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑t > 6:479216/1‑140 (MQ=255)
aGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTccc < 4:747434/140‑1 (MQ=255)
aGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑GTTTTACCGtttta > 2:804530/1‑139 (MQ=255)
aGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCGTTTTTCCGGtttt > 1:174511/1‑140 (MQ=255)
gCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGC‑TTTTTCCCGtttt > 8:484779/1‑138 (MQ=255)
gCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGACGCCCAGCTAAACGTACTCAGTGAGCCGGCGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTcc < 1:935043/140‑1 (MQ=255)
gACGGGTTTCACCCTCCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAACCGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGAcc < 8:435509/138‑1 (MQ=255)
gACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAg < 4:431162/140‑1 (MQ=255)
gACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCTCGTC‑TTTTTCCCGTTTTCCGAcc < 8:512776/138‑1 (MQ=255)
gACGGGATTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAg < 3:788703/140‑1 (MQ=255)
cGGGTGTAACCCACAGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCCGTGAGCCGTAGTTCGAGGCACCTGCAAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCTACCAg < 8:956976/138‑1 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGAt < 1:1104119/140‑1 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGAt < 4:124950/140‑1 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGAt < 2:218791/140‑1 (MQ=255)
tttCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACCCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCATCTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGGTTTCCGCCCCGCGCTcc > 3:971635/1‑140 (MQ=255)
caccGCCTGATTATCGTATCCATATCCCGGTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGaa < 1:552914/140‑1 (MQ=255)
ccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCACCTCTCTTTGGCTGGTCGCGTG‑ATTTTACCGTTTTCCGACCAGCGCACCATATGaaaa > 3:418668/1‑139 (MQ=255)
ccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTA‑TTTTTACCCTTTTACCCCCCCCGATCCAAATTaaaa > 1:545519/1‑139 (MQ=255)
ccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGA‑TTTTTCCCCTTTTCCGACCCACGCTCCATATGAAAg > 5:971283/1‑140 (MQ=255)
gCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCCCCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGCTCCATATTaaac > 8:813820/1‑137 (MQ=255)
ccTGATTATCTTATCAATATCCCGTTGCCGCCCATCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCAAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGc < 8:941071/138‑1 (MQ=255)
ccTGATTATCGAATCCATATCCGGTTTCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTa < 3:668058/140‑1 (MQ=255)
gtGATTATCGTATCCATATCCCGGTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc < 4:459615/139‑1 (MQ=255)
cggcttATAGTATCCTTATCCCGTTGCCGCCCAGCTAAACGTACTGAGTGAGCCGGAGGTAGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCt < 7:77118/134‑1 (MQ=255)
cTGATTATCGTCTCCATATCCCGTTGCCGCCAAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc < 5:366503/140‑1 (MQ=255)
cTGATTATCGTATCCATATCCCGGTGACGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGCGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc < 4:624794/140‑1 (MQ=255)
cTGATTATATTATCCATATCCCTTTGCCTCCCAGCTAAACGTACTAAGTGAGCCGGAGGGCGAGGCACATGCCAGCCAACTCTCTTTGGATGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAATCTAc < 3:486530/140‑1 (MQ=255)
ttATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGcc < 3:927429/140‑1 (MQ=255)
tctCGTATCCATATCGCGTTGCCGACCAGCTAAACGTACTCCGGGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGccc < 3:67978/138‑1 (MQ=255)
tATCGTATCCATATCCCGTTGCCGCCCAGATAAACGTACGAAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGccc < 5:591854/140‑1 (MQ=255)
tCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTACCGTTTTACGCCCCACGCTCCATATGAAAGCAACCGCCCCa > 1:210862/1‑140 (MQ=255)
cGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCat < 3:613769/140‑1 (MQ=255)
gTATCCATATCCCGTTGCCGCCCAGCTACACGTACGCAGTGAGCCGGAGGTCGAGTCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGGTTTCCGACCAGCGATCCATATGAAAGCCACCGCCCCa < 8:406515/138‑1 (MQ=255)
gTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGCCCAGCGATCCAAATTAAAGCTACCGCCCCa > 8:189585/1‑138 (MQ=255)
gTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGC‑GTTTTGCCGGTTTGCGACCCGCGATCCCAATGAAAGCGACCCCCCCcta > 3:893359/1‑140 (MQ=255)
gTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCata < 3:307710/140‑1 (MQ=255)
aTCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGG‑TTTTTCCCGTTTTCCGCCCAGCGATCCATATGAAAGCTACCGCCCCata > 7:909088/1‑138 (MQ=255)
ccATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTG‑TTTTTGCCGTTTTCCGACCAGCGATCCAAATAAAAGCTACCGCCCCATATCtt > 6:333038/1‑139 (MQ=255)
cATATCCCGTTGCCGCCCAGCTAAACGTACTGATTGAGCCGGAGGTAGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCAGAACAGCGATCCATATTAAAGCTACCGCCCCATATCt < 8:917270/138‑1 (MQ=255)
cATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGc < 5:499329/140‑1 (MQ=255)
cATATCCCGGTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGTCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGc < 5:859911/140‑1 (MQ=255)
tatCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCa < 5:255993/140‑1 (MQ=255)
atCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTACCGGTTTCAGACAAGCGCTCAATATTAAAGCTACCGCCCCATTTCAGCCAc > 5:452258/1‑140 (MQ=255)
cccGTTGCCGCCCAGCTAAACGTACTCAGTGCGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGc < 2:153960/140‑1 (MQ=255)
cccGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTG‑TTTTTCCCCTTTTCCGACCAGCGATCCATATTAAAGCAAACGCCCCATATCTTCCAAGc > 5:1008443/1‑140 (MQ=255)
cccGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGc < 6:671659/140‑1 (MQ=255)
cccGTGGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGTTACCGCCCCATATCTGCCAc < 7:1009713/138‑1 (MQ=255)
cGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCATCGATACATATGAAAGCTACCGCCCCATATCTGCAACGCCa > 6:636975/1‑140 (MQ=255)
cGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGACCCGc > 8:425862/1‑138 (MQ=255)
gTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTACGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCac > 3:508258/1‑139 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCCGCCAACTCTCTTTGGCTGGTCGCGGC‑GTTTTCCCGGTTTCCGACCCGCGATCCATATGAAACCTACAGCCCCATATCTGCCCCGccc > 7:449167/1‑137 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTTGTCGCGTC‑TGTTTACCGTTTTCCGCCCCGCCCTCCAAATGAAATCTACCCCCCCATAGCTGCCACCCCacc > 2:109201/1‑138 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTG‑TTTTTACCGTTTTACGCCCAGCCATCCAAATTTAAGCTACCGCCCCATAAATGCCACGCCAGc > 4:362435/1‑140 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGc < 4:802361/140‑1 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑GTTTTACCGTTTTACGACCCGCGCTCCATATTAAAGCTACCGCCCCATATCTGCCACGCCCGc > 1:523580/1‑140 (MQ=255)
cccATCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCa < 2:54277/140‑1 (MQ=255)
cccAGCTAAACGTCCTCAGTGAGCAGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTAAAGTATTCAGACCAGCGATCCAAAATAAAGCAACCGCCCCAAATCAGCCACGCCAGAGGTGCa > 2:1074260/1‑140 (MQ=255)
cAGCTATACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCTGCCAAGTCTCTATGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCAcc < 2:97498/140‑1 (MQ=255)
cTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑GTTTTCCCGTTTTACGACCCGCGATCCATATGAAAGCTACCGCCCCATATCTTCCACGCCAGCGGTGCCCCCAc > 5:743771/1‑140 (MQ=255)
aaCGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGcc < 6:518514/140‑1 (MQ=255)
ccGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGGCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCa < 5:706649/139‑1 (MQ=255)
ccGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCGCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCa < 6:374974/139‑1 (MQ=255)
ccTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGATGCCACGTc < 1:1007252/139‑1 (MQ=255)
aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTc < 4:5511/140‑1 (MQ=255)
aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACg < 8:665240/138‑1 (MQ=255)
aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGAGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTc < 1:5045/140‑1 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCCGCCAACTCTCTTTGGCTGGTCGCGGC‑TTTTTCGCGTTTTCCGACCCGCGATCCAGATGAAAGCTACCCCCCCCTATCTGACCCGCCAGCGGTGCCCCGGCGCCACGGccc > 1:663991/1‑140 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCACCTCTCTTTGGCTGGTCGCGTG‑TTTTTCCCGTTTTCAGCCCCGCGATCCCTATGACAGCTCCCGCCCCCTATCTGCCCCGCCCGCGGGGCACCGCCGCCCCGGccc > 5:146489/1‑140 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTACGACCACCGATCCATATGAAAGATAACGCCCCAAATCTGCCACGCCAGCGGTTCCCCGACGcccgatccc > 4:850300/1‑133 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTACCGTTTTCCGACCAGCGATCCAAATGAAAGCTACCGCCCCATATCTGCCACGCCCGCGGTGCCCCGACGCCACGTc > 8:496270/1‑138 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGG‑TGTTTCCCGTTTTCCGCCCAGCGATCCATATGGAAGCTACCGCCCCAATTATTCCCCGCCAGCGGTGCACCGACGCCCCGTccc > 1:956624/1‑140 (MQ=255)
gcAGTGAGCAGGAGCGCGAGGCACCTGACAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTccc < 6:277240/139‑1 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGC‑TTTTTCCCGTTTTACGACCAGCGATCCCTATGAAAGCTACCGCCCCAAATATGCCCCCCCAGCGCTGCACCGACGCCACGGACCCggg > 6:1033931/1‑139 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTCGTCGCGTC‑CTTTTCCCGTTTACACACCCCCGAACCAGATTAAACCTACCCACCCAGATATGCCCCCCCACCGGGGCCCCCACCCCACCGCCCCCGc > 6:950557/1‑140 (MQ=255)
gAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTG‑TTTTTGCCGTTTTACGCCCAGCGCTCCCTATGAAAGCTACCGCCCCATATCTGCCACGCCATCGGTGCCCCCCAGCCCCGTCCCCgg > 8:207370/1‑138 (MQ=255)
gAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGCCCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCCCGTCCCCGGca > 3:1076481/1‑139 (MQ=255)
ccGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTaaa < 2:181367/140‑1 (MQ=255)
ccGGAGGTCGAGGCACCAGCCAGCCAACTCTCTTTGGCTGGTCGCGGC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTa < 8:257724/138‑1 (MQ=255)
cGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAAc < 5:836865/140‑1 (MQ=255)
cGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTaa < 7:189585/138‑1 (MQ=255)
ggAGGTCGAGGCACCTGCCAGCCCACTCTCTTTGGCTGGTCTCGGC‑TTTTTCCCGTGTTCCGCCCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGGGCACCGACGCCACGTCCACGGCTAAACa < 6:404847/140‑1 (MQ=255)
ggAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTaaa < 7:5802/138‑1 (MQ=255)
ggAGGTCGAGGCACCTGCCAGCCAAATCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTaaa < 8:454614/138‑1 (MQ=255)
gAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAAc < 7:35448/138‑1 (MQ=255)
gTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATTAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGGCCCCCGCTaaaaaccat > 2:384780/1‑134 (MQ=255)
gcGAGGCACCTGCCAGCCAAATCTCTTTGGCTGGTCGCGGC‑TTTTTCCCGTATTCCGACCAGCGATCGATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTa < 6:772829/139‑1 (MQ=255)
cGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGC‑TTTTTACCGTTTTACGCCCCGCGATCCATATGAAAGCTAACGCCCCATTTCTGCCACGCCCGCGGTGCACCGACGCCACGGCCCCGGCGAAACAGCTTAt > 4:169761/1‑140 (MQ=255)
ggCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGa < 1:1076070/140‑1 (MQ=255)
tGCCAGCCAACTCTCTTTGGCTGGTCGCGGC‑TTTTTCCCGTTTTACCACCCGCGATCAATAAGAAAGCAACCGCCCCATATCAGCCAAGCCCGCGGGGAACCGACGCCACGGCCCCGGCGAAACAGCGGATTGACCCGcc > 6:888990/1‑139 (MQ=255)
agccaACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTgg < 8:906523/138‑1 (MQ=255)
agccaACTCTCTTTGGCTGGTCGCGGC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGt < 6:713204/140‑1 (MQ=255)
ccaACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGc < 3:37844/140‑1 (MQ=255)
ctctTTGGCTGGTCGCGTA‑TTTTTACCCTTTTCCGACCACCGATAAATAATAAAGATACAGCCCCATATATGCCAACCCATCGCTGCACCCACCCCCCGACCCCGGCTAAAAAGAATAATTACCCCCAGGGTGGGTTTgg > 2:362560/1‑139 (MQ=255)
cTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCCCGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCAcg < 1:706120/140‑1 (MQ=255)
cTGGGCGCGTC‑TTTTTCCCGATTTCCGACCAGCGATCCTTATGAAAGCTACCGCCCCATTTCTGCCACGCCTGCGGTGCACCGACGCCACGTCCCCGGATAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCAcg < 1:800457/140‑1 (MQ=255)
ggTCGCGGC‑TATTTCCCGTTTTCCGACCCGCGATACATATGAAAGCTACCGCCCCAAAAAATCCACCACAGCTGTGCACCCACCCCCCCTCCCCCGGAAAACCCCGTAATGACCCCCGGGGTGCGTTTGCTGAacacc > 8:719342/1‑137 (MQ=255)
gTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGCTCCATATGAAAGCTACCGCCCCATTTCTGCCACGCCAGCGGTGCACCGACGCCCCGTCCCCGGCTAAACAGATTATTGACCCGCTGGGTGCGTTTGATGATCAcgcgc > 2:831955/1‑139 (MQ=255)
gTCGCGTC‑TTTTTACCGTTTTCCGACCACCGATCCATATGAAATCTACCCCCCCAAATAAGCCACGCCACCGGTGCACCGACGCCACGTCCCCGGCTAAACCGCTTATTGACCCGCTGGGTGCGTTTGCTGATCAcgcgc > 5:789540/1‑139 (MQ=255)
cgcgTC‑TTTTTCCCGTTTTCAGACCAGCGATACATATGAAAGCTACCGCCCCATATATGCCCCGCCAGCGGTGCACCGACGGCACGTCCCCGGATAAACAGCTTATTGTCCCGCTGGGTTCCTTTGCGGGTAACGCGa > 8:101758/1‑138 (MQ=255)
cgTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGACCGt < 5:333038/140‑1 (MQ=255)
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CCCCCCAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTC‑TTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGACCGTT > NZ_CP022686/3868709‑3868984
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
