Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F13 I0 R1
|
203 |
11425.2 |
8793538 |
98.4% |
8652841 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,868,846 |
T→G |
11.3% |
T383P (ACG→CCG) |
ecpC ← |
fimbrial usher EcpC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,868,846 | 0 | T | G | 11.3%
| 342.9
/ 6.7
| 192 | T383P (ACG→CCG) | ecpC | fimbrial usher EcpC |
| Reads supporting (aligned to +/- strand): ref base T (81/84); new base G (23/4); total (104/88) |
| Fisher's exact test for biased strand distribution p-value = 6.19e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 192 total aligned reads displayed.
CCCCCCAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGACCGTT > NZ_CP022686/3868709‑3868984
|
ccccccAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCAAAAACTCTTTGGCATGTCGCGTca > 6:121191/1‑139 (MQ=255)
ccccccAAGCGGCAGCGTCAGACGGGTTACACCCACCGCCTGATTATCGTATCCATATAAAGTAGCCGCCCAGCTAAACGTACTCATTGATCCGTAGGTCGAGGCACCTGCCAGCCCACTCTCTTTGGCGAGTCGCGTCt > 8:249974/1‑140 (MQ=255)
cccccAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCtt > 2:574592/1‑140 (MQ=255)
ccccAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCt < 4:171828/138‑1 (MQ=255)
cccAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCgttt > 5:583416/1‑140 (MQ=255)
aGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTccc < 8:756191/140‑1 (MQ=255)
cAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTGTTTGCCGtttt > 5:237964/1‑140 (MQ=255)
tCAGACGGGTTTCAGCCACCGCCTGATTATCTGATCCATATCCCGTTGCCGCCGAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCTCCTACCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGAc < 1:614219/140‑1 (MQ=255)
gACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAg < 1:36629/140‑1 (MQ=255)
ggggTTGCAACCACCGCATGATTATCGTATCCTTATCCCGTTGCCGACCAGCTAAACTTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCg < 5:384665/139‑1 (MQ=255)
cGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCg < 6:660500/140‑1 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGAt < 8:818553/140‑1 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGAt < 8:654805/140‑1 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGAt < 1:436522/140‑1 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGAt < 6:1002655/140‑1 (MQ=255)
gTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGGTGGTCGAGTCTTATTCCCGTTGTACGACCAGAGATc > 8:844747/1‑140 (MQ=255)
gTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATc < 7:193335/140‑1 (MQ=255)
gTTTCAACCACCGCATGATTATCGTATCCATATCCCGTAGCCGCCCATCTATACGTACTCAGTGAGCCGGAGGTCGAGGCTCCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATc < 7:762278/140‑1 (MQ=255)
tttCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCCTTTTACGACCCGCGAtac > 1:245648/1‑138 (MQ=255)
tCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCCGCGATCCat > 2:38354/1‑140 (MQ=255)
cacccaccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCata < 1:376279/140‑1 (MQ=255)
caccGCCTGCTTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTAAGTCAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGGTTTCCGACCAGCGATCCATATg < 3:515953/138‑1 (MQ=255)
caccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGaa < 2:741391/140‑1 (MQ=255)
ccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGATTTTTAGAGATTTCCGCCCCGCGTAACAGATGAAAg > 7:950310/1‑140 (MQ=255)
ccGCCTGATTATAGTATCCATATCACGTTGCCTCCCAGCTAAACGAACTCAGTGAGCCGGAGGTCGAGGCAACGTCCAGACAACTCTCTTTGGCTGGACGCGGCGTTTTCACGTGTTCCACACAGCGATCCAAATGtaac > 6:438205/1‑139 (MQ=255)
gCCTGATTATAGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGCGCCGCAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTGGCGTCATTTTCCCGTTTTCCCACCAGCGATTCATATGAAAg > 4:343412/1‑138 (MQ=255)
ccTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGGTTTTTACCG‑TTTGCGCCCCGCGCTCCATATTAAAgaaac > 1:157250/1‑136 (MQ=255)
ccTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTACCGTTTTACGACCAGCGATCCATAAGAAAGCTa > 8:360896/1‑140 (MQ=255)
ccTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTATTTGGCTGGTCGCGTAATTTTACCGGTTTAAGACAAGCGATACATATGAAAGc > 4:109464/1‑138 (MQ=255)
ccTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTAAGTGAGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGc < 3:1012582/138‑1 (MQ=255)
ccTGATTATCGAATCCATCTCCCGTTGCAGACCAGCTACACGTACACAGTGCGCCGTAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGc < 3:650376/138‑1 (MQ=255)
cTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCt < 4:252361/138‑1 (MQ=255)
cTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc < 2:944315/140‑1 (MQ=255)
cTGATTATCGTAGCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc < 7:653352/140‑1 (MQ=255)
tCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTACGACCAGCGATCCATATGAAAGCTACCGCCCCa > 6:478958/1‑140 (MQ=255)
cGTATCCATATCCCGTTGCAGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCACCTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTACGACCAGCGATCCATATGAAAGCATACGCCCCat > 2:830626/1‑140 (MQ=255)
gTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTACCGTTTTCCGACCCGCGAGCCATATGAAAGCAACCGCCCCa > 3:897536/1‑138 (MQ=255)
cATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGc < 2:970314/140‑1 (MQ=255)
atCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGGTTTTACCCTTTTACGACCAGCGATCCAAAATAAATCAAACCCCCCAGATCTGcccc > 7:256266/1‑138 (MQ=255)
atCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGCCCCGCGATCCATATGAAAGCTACCGCCCCATATCTGcc > 4:147245/1‑138 (MQ=255)
atCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCAc > 8:474066/1‑140 (MQ=255)
atCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTACGCCCCGCGATCCATATGAAAGCTACCGCCCCATATCTGcc > 3:664076/1‑138 (MQ=255)
atCCCGTTGCCGCCCAGCTAAACGTAATCAGTGAGCCGGAGGTCGAGTCACCTCCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTGCGACCAGCGATCCAGATGAAAGCTAACGCCCCATATCTGCCAc > 7:615889/1‑140 (MQ=255)
cccGTTGCCGCCCAGCTAACCGTACTCAGTGAGCCGGCGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGGCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCAc < 3:774460/138‑1 (MQ=255)
cccGTTGCCGCCCAGCTAAACGTACTCACTGAGCCGGAGGTCGAGGCACATGTCAGCCTACTCTCTTTGGCTGGTCGCGGCTGTTTCCCGTTTTCCGGCCAGCGATCCATATGAAAGCTACCGCCCCATAACTGCCAc > 4:4964/1‑138 (MQ=255)
cGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTACCGGTTTCCGCCCAGCGATCCATATGAAAGAGACCGCCCCATATCTTCCCCGCCa > 2:198139/1‑140 (MQ=255)
ggtGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAg < 5:488384/138‑1 (MQ=255)
gTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCAGTTTTCAGAACACCGATCCATATGAAAGCTTCCGCCCCATATCTGCCACGcccc > 6:353577/1‑138 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCTAGGCACCTGCCAGACAACGCTCTTTGGCTGGTCGCGTCTTGTTCGCGGTTTCCGAACAGCGATCCATATGAAAGCTACCGCCCCATAGATGCCACGCCAgg > 6:75014/1‑139 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCACCTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTACGCCCAGCGATCCAAATGAAAGCTACCCCCCCCAATCTGCCACCCCCGc > 5:859914/1‑140 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTCCGACCAGCGATCCCTATGAAAGCTAACGCCCCCTATATGCCACGCCAGc > 8:561273/1‑140 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGGGTTTTACCGTTTTGCGGACAGCGATCCAAATGAAAGCTACCCCCCCAAAACTGCCCCGccccc > 6:1023559/1‑137 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGCACCGCGCTCCATATGAAAGCTACCGCCCCATATCTGCCACCCCAGc > 2:288573/1‑140 (MQ=255)
gccgccCAGCTAAACGTACTCAGTGCGCCGGAGGTCGCGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTACGACAAGCGATACATATGAAAGCTACCGCCCCAAATAATCCACTCCAGc > 4:822797/1‑138 (MQ=255)
ccgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCAACCGCCCCAAATCTGCCACGCCAGcc > 4:156311/1‑137 (MQ=255)
cccAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTg < 3:335227/138‑1 (MQ=255)
cAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCAcc < 8:501122/140‑1 (MQ=255)
ccGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCATTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCa < 6:912229/139‑1 (MQ=255)
ggTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCGGTTTGCCGGTTTGCGCCCCGCGCTCCATATGAAAGCTACCGCCCCATATCAGCCACCCCCGCGGGGCCCCgccgcccc > 1:1093941/2‑138 (MQ=255)
aCTCCGTGAGCCGGAGGTCGAGGCACCTGGCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACg < 3:1009379/138‑1 (MQ=255)
aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAACGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTc < 1:10305/140‑1 (MQ=255)
cTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGCCTGGTCGCGTCGTTTTCCCGTTTTACGACCAGCGAACCATATGAAAGCTACCGCCCCATATATGCCACGCCCGCGGGGCACCCACGcacagtcc > 5:836236/1‑133 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTCCCGGTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATATGCCACGCCCGCGGTGCACCGACCCCCCGTccc > 8:18945/1‑140 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTCCGACCAGCGAACCATATGAAACCACCCCCCCCATATCTGCCTCGCCCACGGTGCACCGACGCCACGAccc > 7:692220/1‑140 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTACGACCAGCGATACATATGAAAGCTACCGCCCCATATCTGCAACGCCAGCGGTGCACCCACGCCACGTccc > 6:630022/1‑140 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCATTTTCCCCTTTTACGAACCGCGAACCAAATGAAAGCTACAGCCCCAATTCTGCCACGCCACCCGTGCACCGAcccccccagcc > 1:798077/1‑133 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGGTTTTTCCCGTTTTACGACCAGCGCTCCATATTAAAGCTACCGCCCCATATATTCCACCCCAGCGGTTCACCGACGCCACCTccc > 5:604346/1‑140 (MQ=255)
gcAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTc < 4:1028067/137‑1 (MQ=255)
aGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGGTTTCCGACCAGCGCTCCAAATGAAAGCTACCGCCCCATATCTGCCCCGCCCGCGGTGCCCCGACGCCCCGTccc > 3:356919/1‑138 (MQ=255)
gTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGAGATCCATATGAATGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCgg < 7:12475/140‑1 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTCCAGTTTTACGACCAGCGCTACCTATTAAAGCGACCGCCCCCTATCTGCCACGCCAGCGGTGCACCGAAGCCACGTCCCCggg > 6:263147/1‑139 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGCCCAGCGATCCATATGAAAGCTACCGCCCCAAATATGCCACGCCCGCGGTGCACCGACGCCACGTCCCCGGc > 2:603649/1‑140 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAg < 5:651526/73‑1 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGGTTTCCCGCCAGCGATCCATATGAAAGCTACCGCCCCCTATCAGCCACGCCAGCCGTGAACCGACGCCACGGCCCCCGc > 5:802888/1‑140 (MQ=255)
gAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTTGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATTAAAGCTACCGCCCAATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCt < 1:1000405/140‑1 (MQ=255)
aGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGCTCTCGTCGTTTTACCCTTTTACCACCCACGAACAATATGAAAGCAGACGCCCACTAAATCCCCCCCCAGCCGAGCACCCCCACCACCTCCCCGGcgg > 2:1059860/1‑138 (MQ=255)
ccGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCGTTTTCCCGTTTTACGACCAGCGATCCATATGAAAGCAAACGCCCCAAATCTGGCCCCCCAGCGGTGCAACCACGCCACCTCCCCGGcaa > 3:217803/1‑136 (MQ=255)
cGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTaa < 4:36990/138‑1 (MQ=255)
cGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAAc < 2:634218/140‑1 (MQ=255)
ggAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTaaa < 4:963954/138‑1 (MQ=255)
aGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGCCCAGCGCTACCTATGAAAGCTACCGCCCCAAATCGGCCACGCCACCGGTGCACCGACGCAACGTCCCCGCCTAAACAGc > 8:524967/1‑140 (MQ=255)
gTCGAGGCACATGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTACGAAAAGCGATACATATGAAAGGTAGCGCCCCATATAATCCACTCCAGCGGTGAACCGAAGCACCGTCGCCGGGTAATCAggat > 6:993319/1‑137 (MQ=255)
tCGAGGCACCTTCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGTCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTGCCCGGCTAAACAGCt < 4:704558/138‑1 (MQ=255)
aGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGGTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCGAAACAGCTTAt > 3:910014/1‑138 (MQ=255)
cACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGa < 3:156311/138‑1 (MQ=255)
ccTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCg < 1:566631/140‑1 (MQ=255)
ccTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCg < 5:690631/140‑1 (MQ=255)
ccTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTATCCCGTATTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGAcc < 4:568107/138‑1 (MQ=255)
gccagccaACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTg < 2:762198/140‑1 (MQ=255)
ccgccaACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTGTTCCGACCAGCGAGCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTggg < 2:457982/138‑1 (MQ=255)
aaCTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGCTCCATATGAAAGCTACCGCCCCATATATGCCCCGCCAGCGGTGCACCGACGCCACCTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGc > 4:647986/1‑138 (MQ=255)
aCTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCACCGGCTAAACAGCTTATTGACCCGCTGGGTGCg < 4:691616/138‑1 (MQ=255)
ctctctTTGGCTGGTCGCGTCTTTTTCCCG‑TTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTg < 2:157250/140‑1 (MQ=255)
ctctctTTGGCTGGTCGCGTCGTTTTCCCGTTTTCCGACCAGCGCACCATATGAAAGCGACCGCCCCATATATGCCCCGCCAGCGGTGCACCGACGCCCCCTGCCCGGCGAAACAGCTTATTGACCCGCTGGGTGCGttt > 6:830523/1‑140 (MQ=255)
tcgctTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCCGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGtt < 3:1080750/135‑1 (MQ=255)
gcgctTTGGCTGGTCGCGTCGTTTTCCCGTTTTCCGACCAGCGAGCCATAAGAAAGCTACCGCCCCATATCAGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTg < 8:239441/137‑1 (MQ=255)
tGGCTGGTCGCGGGTTTTTCCCGGTTTCCGCCCCGCGATCCATATGAAAGCTACCGCCCCATAAATGCCACCCCCGCCGGGCACCGCCGCCACGGCCCCGGCGAAACAGCGTATTGACCCGCAGGGTGCGGTTGCTgt > 3:284509/1‑137 (MQ=255)
ggTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGACCCATATCTGCCACTCCAGCGGAGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCTATTGGTGCGTTTGCTGATCAcgcg < 8:1015066/140‑1 (MQ=255)
gTCGCGTGTTTTTCCCGGTTTGCGACCCGCGATCCATAAGAAAGCTACCGCCCCATATATGCCACGCCCGCGGGGCACCCCCGCCACGGGCCCGGCTAAACAGCTTATTTACCCGCTGGGTGCGTTTGCTGATAAcgcgc > 6:490210/1‑139 (MQ=255)
gTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGACCGtt < 7:360896/140‑1 (MQ=255)
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CCCCCCAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGACCGTT > NZ_CP022686/3868709‑3868984
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
