Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F12 I0 R1
|
158 |
5737.7 |
7407908 |
98.3% |
7281973 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,868,846 |
T→G |
14.2% |
T383P (ACG→CCG) |
ecpC ← |
fimbrial usher EcpC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,868,846 | 0 | T | G | 14.2%
| 227.8
/ 9.2
| 141 | T383P (ACG→CCG) | ecpC | fimbrial usher EcpC |
| Reads supporting (aligned to +/- strand): ref base T (50/67); new base G (16/7); total (67/74) |
| Fisher's exact test for biased strand distribution p-value = 2.27e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 142 total aligned reads displayed.
CCCCCCAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGA > NZ_CP022686/3868709‑3868979
|
cccAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCtt > 8:274939/1‑138 (MQ=255)
aaGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGACTATCGTATCCATATCCCGGTGCCGCCCAGCTCACCGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTcc < 5:827645/140‑1 (MQ=255)
aGCGGCAGCGTCAGACGGGTTTCACCCACAGCCTGATTATCGTATCAATAACCCGTTGCCGCCAAGCTAAACGTACTCAGTCAGCCGGAGGACGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGAGGCGTTTTccc > 1:223454/1‑140 (MQ=255)
cAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCCTATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGGTTTTTCGCGtttt > 1:369925/1‑140 (MQ=255)
cGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCg < 5:111353/140‑1 (MQ=255)
tCAGACGGGTTTCACCCCCCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGGCGCGGGGTTTTGCCGGTTTCCGAc > 1:196672/1‑140 (MQ=255)
tCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGAc < 4:742318/140‑1 (MQ=255)
ccAGACGGGATTCACCCACCGCCTGAGTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACTTACTCAGTGCGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGAGTCTTTTTCCCGTTTTCCg < 8:663619/137‑1 (MQ=255)
gACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCCGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAg < 4:253851/140‑1 (MQ=255)
gACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGAcc < 7:38561/138‑1 (MQ=255)
gACGGGTTTCACCCACCGCCTGAATATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGAcc < 7:99816/138‑1 (MQ=255)
cGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCg < 4:306125/140‑1 (MQ=255)
ggTTTGACCGACCGCCTGAATATCGTATCCATTTCCCGTTGCCGCCCAGCTAACCGTACTCAGTGAGCCGGAGGTCGTGGCACCTGCCAGCCAACTCTCTTTGGCTTGTCGCGGCTTTTTCCCGTTTTCCGACCAGCGAt < 4:152885/140‑1 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCg < 7:215975/138‑1 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGAt < 4:467018/140‑1 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGAt < 6:52725/140‑1 (MQ=255)
ggTGTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGGCGCGTCTTTTTCCCGTTTTCCGACCAGCg < 8:52080/138‑1 (MQ=255)
gTTTCCCCCAGCGCCTGATTATCGTATGCATAAGCCGTTGCCGCCCAGCTAATCGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGGGTCTTTTTCGCGTTTTCCGACCAGCGATc < 4:728527/140‑1 (MQ=255)
gTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGa < 7:61113/138‑1 (MQ=255)
gTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATc < 3:45864/140‑1 (MQ=255)
gTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCGTTTTCCCGTTTTCCGACCAGCGATc > 2:666293/1‑140 (MQ=255)
gTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCAGCCAGCCAACTCTCTTTGGCTGGTCGCGGCGTTTTAGCCTTTTCCGACCAGccaac > 1:338339/1‑136 (MQ=255)
ttCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCAAAACGTACTCAGTGAGCCGGATGTCGAGGCACCTGCCAGCCAACAAGCTTTGGCTGGTCGCGGCTTTGTGCCGGTTTCCGACCAGCGATc > 8:668862/1‑138 (MQ=255)
caccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATg < 7:109598/138‑1 (MQ=255)
ccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCCGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCCGCCAACTCTCTTTGGCTGGTCGCGTATTTTTCCCCTTTTCCCACCCCCGATCCctattcaag > 5:578903/1‑135 (MQ=255)
ccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCCGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGCCCAGCGATCCATATGAAAg > 2:571213/1‑140 (MQ=255)
ccGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTCCCGGTTTCCGACCAGCGATCCATATTaaat > 1:805359/1‑139 (MQ=255)
gCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGGTTTTTCCCGTGTTCCGCCCACCGATCCATATGaaaa > 8:478826/1‑137 (MQ=255)
ccTGATTATCGTATCCATATCCCGTTTGCGACCAGCTAATCGTACTCTGTGAGCCGGAGGTCTAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCGGACCAGCGATCAATATGAAAGCTa < 5:459450/140‑1 (MQ=255)
ccTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTa < 4:496365/140‑1 (MQ=255)
ccTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTa < 6:430612/140‑1 (MQ=255)
cTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCTTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc < 6:720301/140‑1 (MQ=255)
ttATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCTGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGcc < 3:83150/140‑1 (MQ=255)
ttATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGcc < 3:554864/140‑1 (MQ=255)
ttATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGcc < 5:688738/140‑1 (MQ=255)
tATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGGGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGccc < 3:489883/140‑1 (MQ=255)
tCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTTCCAGCCAACTCTCTTTGGCTGGTCGCTTGATTTTACCGTTTTACGACCCACGAAACAAAATAAAGCAACCCCCCCa > 1:886176/1‑140 (MQ=255)
tATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTATTTTTACCGTTTTCCGACCAGCGATACCAATGAAAGCAAAAGCCCCatat > 6:305843/1‑140 (MQ=255)
tCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTACGCCCAGCGATACATATGAAAGCTAACGCCCCataaaa > 1:202880/1‑137 (MQ=255)
cATATCACGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGc < 1:650273/140‑1 (MQ=255)
acagtCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCGGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCTGCGATCCATATGAAAGCTACCGCCCCATATCt < 7:650822/134‑1 (MQ=255)
atCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTTCCCTTTTGCGACCACCGCTCCATAATAAAGCTACCGCCCCatataatccac > 3:153790/1‑133 (MQ=255)
atCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGGTTTTGCCGTTTTACGGCCAGGGGTCCCAATTAAATCTTCACCCCCATATAAGCCAc > 3:471526/1‑140 (MQ=255)
atCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGGTTTTTGCCGTTTTCCGACCACCGATGCATATGAAAGCAACCGCCCCCTATATTCCAc > 1:897540/1‑140 (MQ=255)
tCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTGTTTTTACCGGTTTCCGCCCAGCCATCCCTATGCAAACTTACGCCCCCTATATGCCAcc > 3:383223/1‑139 (MQ=255)
cccTTTGCCGCCCAGCTACACGTACTCTGTGATCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCAc < 8:123240/138‑1 (MQ=255)
cccGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGCGGTCGAGGCACCTGCCAGCCCACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCAc < 7:636445/138‑1 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCCGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTGCCGTTTTACGCCCCGCGATCCATATGAAAGCTTCCGCCCCATATCTGGCCCGccc > 7:593465/1‑137 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAg > 8:628709/1‑98 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAg < 7:628709/98‑1 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATTTCTGCCACGCCAGc > 4:941750/1‑140 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATATGCCACGCCAGc > 3:820186/1‑140 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTCCGCCCACCGAACCAAATGAAAGCTACCGCCCCAAATATGCCAccccccc > 1:643163/1‑137 (MQ=255)
cAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCAcc < 2:332524/140‑1 (MQ=255)
cAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTCCGACCAGCGAACCATATGAAATCTAACGCCCCATATCAGCCACGCCATCggcttt > 8:650822/1‑134 (MQ=255)
gCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGTTTTCCCTCCACCGATACATAATAAAGCTACCCCCCCAAATAATCCACCCCACCCGTGCAcc > 7:305810/1‑138 (MQ=255)
gCTAAACGTACTCAGGGAGACGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCAcc < 7:478176/138‑1 (MQ=255)
cTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGCCCCGCGCTCCCTATGAAAGCTACCGCCCCATATAAGCCACGCCCGCGGTGCACCgcc > 1:72011/1‑138 (MQ=255)
ccGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCa < 1:479036/139‑1 (MQ=255)
aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTGCCGTTTTGCGCCCAGCGATCCCTATGAAAGCTACCGCCCCATTTCAGCCACCCCAGCGGGGCACCGACGCCACGTc > 6:87427/1‑140 (MQ=255)
aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTc < 6:628936/140‑1 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTTCCCGTTTACGACCAACGATCCAATAGAAAGCTACCGCCCCAAAACTGCCACCCCAGCGGTGCACCGACGccccctacc > 3:554373/1‑133 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGGTTTACGACCAGCGATCCATATGAAAGCTACCCCCCCCTATAAGCCACGCCCGCGGGGCCCCGCCGCCACCTccc > 2:859800/1‑140 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTAGTTTTCCCGTTTTCCGCCCAGCGCTCCATATGAAAGCTACCGCCCCATAACTGCCACGCCCGCGGTGCACCGACCCCACGTccc > 6:379734/1‑140 (MQ=255)
ccAGTTAGCCGGAGGTCGAGGCACCTGACAGCCAACTCTCTTTGGCTGGTCGCGTCTGTTTCCCGTTTTCGGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGACACGCCAGCGGTGCACCGACGCCACGTccc < 4:432689/139‑1 (MQ=255)
cAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCGGGTCGCTTCTTTTTCACCTTTTCAGCACCTCGATCCATATGAAAACTAACGCACCCTATATGCCACCCCAGCGGTGCGCACACTGCACGTcccc > 5:211729/1‑140 (MQ=255)
aGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGGTTTTTGCCCGTTTGCGCCCCCCGCTCCCTTTGTAAGCTACCGCCCCCTATATGCCCCGCCCGCGGTGGACCGCCGCCCCGTccc > 7:837991/1‑138 (MQ=255)
gTGAGCCGGAGGTCGCGGGACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCAGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTcccc < 7:233036/138‑1 (MQ=255)
gTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCgg < 3:355871/140‑1 (MQ=255)
gTGAGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATCTCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCgg < 1:416092/140‑1 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc > 6:773132/1‑92 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTACCGGTTTACGACCAGCGCTCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCCCCTCCCCGGc > 5:740593/1‑140 (MQ=255)
aGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTATTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGGACCGACCCCACGTCCCCGGCTa > 2:30294/1‑140 (MQ=255)
aGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTACGCCCAGCGATGCAAAAGAAAGCTAACGCCCCCAATCTGCCACCCCAGCCGGGCACCCGCGCCACGGGCCCGGcga > 1:55082/1‑138 (MQ=255)
gCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTaa < 1:674797/140‑1 (MQ=255)
gCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTaa < 4:229655/140‑1 (MQ=255)
ccGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTaaa < 4:630021/140‑1 (MQ=255)
ccGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGGTTTACGACCAGCGATCCATATGAAATCTACCGCCCCATATCTGCCCCGCCCGCGGTGCACCGACGCCACGGCCCCGGCTaaa > 3:13207/1‑140 (MQ=255)
ccGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGCCCAGCGATCCATATGAAAGCTACCGCCCCATATATGCCACGCCCGCGGGGCACCGACGCCACGTCCCCGGCTaaa > 2:844841/1‑140 (MQ=255)
gTCGCGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTACCGATTTCCGCCCAGCGCTCCATATGAAAGCTACCGCCCCATATCTGCCCCTCCAGCGGTGCACCGGCGCCACGTCCCCGGCTTAACAgg > 8:259763/1‑137 (MQ=255)
gTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTATTTTTACCGTTTTACGCCCAGCGATAAATATGAAAGCTAAAGCCCCAGATAGTCCACGCCCGCGGTTCACCGCCGCCACGTCCCCGGCTACACAGc > 8:140875/1‑138 (MQ=255)
gcGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTa < 5:339942/139‑1 (MQ=255)
gAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTAtt < 2:57344/140‑1 (MQ=255)
gAGGCACCTGCCAGCCAACTCTATTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACATCTTAtt < 6:310510/140‑1 (MQ=255)
aGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTAACGTTTTCCGACCAGCGAACCAAATGAAACCAACCCCCCCATATCTGCCACGCCATCCGTGCACCGACCCCACCTCCCCGGCTAAACACCTTAt > 7:173564/1‑138 (MQ=255)
ggCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGa < 4:43949/140‑1 (MQ=255)
cACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGa < 8:422628/138‑1 (MQ=255)
cACCGGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGAcc < 6:849285/140‑1 (MQ=255)
ccTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCg < 2:793661/140‑1 (MQ=255)
gccagcccACTCTCTTTTGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCTATCCCTATGACAGCTACCGCCCCATATCTGCCACTCCAGCGGTGCACCGACGCCACGTCCCGGGCTAAACAGCTTATTGACCCGc < 7:113282/138‑1 (MQ=255)
gccagccaACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGc < 7:96583/138‑1 (MQ=255)
ccagccaACTCTCTTTGGCTGGTCGCGTCTTTTTGCCGTTTTACGACCAGCGATCCATATGAAAGCTACCGCCCCATATATGCCACGCCAGCGGTGCACCGACGCCCCGTCCCCGGCGAAACCGCTTATTTACCCGCTgg > 6:100991/1‑140 (MQ=255)
cagccaACTCTCTTTGGCTGGTCGAGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTggg < 6:722169/140‑1 (MQ=255)
agccaACTCTCTTTGGCTGGTCGCGTGTTTTTCCCGTTTTACGAACAGCGATACATATGAAAGCAACCGCCCCATATATGCCACCCCAGCGGTGCACCGACGCCACTTCCCCGGCTAAACATCTTATTGACCCGCTgggg > 1:280168/1‑139 (MQ=255)
ccaACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCCGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGc > 6:701880/1‑140 (MQ=255)
ccaACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATATGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGc > 2:681901/1‑140 (MQ=255)
tctctTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGTGTGCGtt < 7:332632/138‑1 (MQ=255)
tctctTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTg < 1:276268/140‑1 (MQ=255)
gTCGCGTCTTTTTCCCGTTTTCCGCCCAGCGATCCATATTAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCCCCGACGCCCCGTCCCCGGCTAAACCGCTTATTGACCCGCTGGGTGCGTTTGCGGATCCcgcgc > 4:125821/1‑139 (MQ=255)
gTCGCGGGTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATATGCCACGCCAGCGGTGCCCCGCCGCCCCGGCCCCGGCGTAACAGCTTATTTACCCGCGGGGTGCGGTTTGTGCTCCcgcgc > 2:362248/1‑139 (MQ=255)
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CCCCCCAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTTCCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCACCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGA > NZ_CP022686/3868709‑3868979
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
