Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F13 I0 R1
|
230 |
5035.0 |
9125430 |
98.4% |
8979423 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,868,846 |
T→G |
12.7% |
T383P (ACG→CCG) |
ecpC ← |
fimbrial usher EcpC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,868,846 | 0 | T | G | 12.7%
| 373.1
/ 10.3
| 218 | T383P (ACG→CCG) | ecpC | fimbrial usher EcpC |
| Reads supporting (aligned to +/- strand): ref base T (77/105); new base G (27/7); total (106/112) |
| Fisher's exact test for biased strand distribution p-value = 6.75e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 221 total aligned reads displayed.
CCCCCCAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCA‑CCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGACC > NZ_CP022686/3868709‑3868981
|
ccccccAAGCGGCAGCGTCAGCCGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCt > 6:811319/1‑140 (MQ=255)
ccccccAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGtgg > 3:689242/1‑138 (MQ=255)
ccccccAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGtgg > 3:628115/1‑138 (MQ=255)
ccccccAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCAGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGACGCGGCACCTGCCAGCCAACTCTCTTTGGATGCTCGCGTcg > 2:929842/1‑139 (MQ=255)
ccccAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCCGCTACACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCt > 7:620652/1‑138 (MQ=255)
ccccAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGtat > 8:488975/1‑136 (MQ=255)
ccccAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCttt < 2:1041959/140‑1 (MQ=255)
ccccAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCtgt > 1:104631/1‑138 (MQ=255)
ggCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑GCCGtt > 4:193068/1‑140 (MQ=255)
cAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCATTGGCTGGTCGCGGCTTTTT‑CCCGtt > 8:205321/1‑138 (MQ=255)
gCGTCAGACGGGTTTCACCCACCGCCAGATTATCGTATCCATATCCAGTTGCGGCCCAGCTAAAAGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCCACTCTCTTTGGCTGGTCGCGGGTTTTTACCCGtttac > 1:949727/1‑138 (MQ=255)
tCAGCCGGGTTTCACCCACCGCCTGATTATCGTATCCAAATCCCGTAGCCCCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCg < 7:721601/138‑1 (MQ=255)
gACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAg < 4:1061963/140‑1 (MQ=255)
gACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAg < 3:343001/140‑1 (MQ=255)
gACGGGGTTCACCCACCGCCTGATGCTCGTATCCATATCCCGTTGCCGCCCATCTAAACGTACTCTGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAg < 3:1051046/140‑1 (MQ=255)
cGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCg < 4:383063/140‑1 (MQ=255)
ggTTTCACCCACCGGCTGATTATCGTTTGCATATCCCGTTGCCGCCCAGCTAAACGTACGCAGTGAGCCGGTGGGCGAGGCACCTGCCTGCCATCTGTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAgag < 8:343665/138‑3 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGAt < 5:931790/140‑1 (MQ=255)
ggTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGAt < 2:983558/140‑1 (MQ=255)
ttttCACACACCGCCTGATTATCGTATCCATATCCAGTTGCCGACCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGa < 7:483256/137‑1 (MQ=255)
gTTTCACCCTCCGCCTGATTATCGTATCCAAATCACGTTGCCGCCCAGCTAAACTTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATc < 6:945616/140‑1 (MQ=255)
tttCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATcc < 5:778555/140‑1 (MQ=255)
aacGCCTGAATATCGTATCAATATCCCGATGCAGCCCAGCTACACGGACTAAGTGAGCCGGAGGTCGAGGCAACTGCCAGCCAACTCTCTTTGGCTTGTCTCGTCTTTTA‑CACGGTTTCCGGCCACAGATCCATATGaca > 4:296872/3‑138 (MQ=255)
gCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAAAACTCTTTGGCTGGTCGCGTCATTTT‑CCCGGTTTACAACCAGCGATCCAAATGaaac > 8:548211/1‑137 (MQ=255)
cTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCt < 7:181708/138‑1 (MQ=255)
cTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc < 5:514034/140‑1 (MQ=255)
cTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc < 4:118440/140‑1 (MQ=255)
cTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTAc < 1:633279/140‑1 (MQ=255)
ttATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGcc < 3:805462/140‑1 (MQ=255)
ttATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGAGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCg < 7:209738/138‑1 (MQ=255)
tCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTATTTTT‑CCCGTTTTCCGCCCACCAATCCATATGAAAGCAACCGCCCCa > 2:1002825/1‑140 (MQ=255)
tCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGGGTTTT‑CCCGTTTTACGACCAGCGATCCATATTAAACCTACCGCCCCa > 3:389842/1‑140 (MQ=255)
cGTATCCATATCCCGTTGCCGCCCATCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCat < 5:47401/140‑1 (MQ=255)
cGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCat < 2:755631/140‑1 (MQ=255)
gTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGGTTTACGCACAGCGATCAATATTAAAGCAAACGCCCCa > 8:777340/1‑138 (MQ=255)
ctATCCATATCCCGTTGCCGCCAAGCTAACCGTACTCAGAGAGCCGGTGTGCGACGCACCTGCCAGGCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCGATATGAATGCTACCGCCCCa < 7:795718/137‑1 (MQ=255)
tatCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCa < 5:650188/140‑1 (MQ=255)
atCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGGTTTACGACCAGCGATCCATATGAAAGCTACCGCCCCATATATGcccc > 4:839889/1‑138 (MQ=255)
atCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCGTTTT‑ACCGTTTTACGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCAc > 3:544840/1‑140 (MQ=255)
tCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTACGACCAGCGATCCATATTAAAGCTACCCCCCCAAATATGCCACg > 2:375260/1‑140 (MQ=255)
cccGTTGCCGCCCCGCTAAACGTCCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGc < 5:740240/140‑1 (MQ=255)
cccGTTGCCGCCCAGCTAAACGTACTCATTTAGCCGGAGGTCGAGTCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTATTTTT‑CCAGTTTTCCGACCAGCGATCCATATGTAAGCTACCGCCGCATATCTGCCAc < 7:831894/138‑1 (MQ=255)
cccGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGc < 6:237607/140‑1 (MQ=255)
cccGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATAAGCCACGc > 4:154799/1‑140 (MQ=255)
cccGTTGCCGCCCAGCTAAACGTACTCAGGGAGCCGGATGTCGAGGCACCTGCCAGACAACTCTCTTTGGCTTGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCTATCCATATGAAAGCTACCGCCCCATATCTGCCACGc < 5:340768/140‑1 (MQ=255)
ccGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACg < 8:720549/138‑1 (MQ=255)
gtggccgccCAGCTAAACGTCCTCAGTGAGCCGGAGGTCGAGGAACCTGCCAGCCTACTCTCTTTGGCGGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCCTATGAAAGCTACCGCCCCATATCTGCCACGCCAg < 2:714389/137‑1 (MQ=255)
gTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGGCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAg < 4:215782/140‑1 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGc > 4:282067/1‑140 (MQ=255)
ttGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑ACCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGc > 3:432074/1‑140 (MQ=255)
tGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACAGCCCCATATCTGCAACGCCac > 7:499368/1‑137 (MQ=255)
tGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCGTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCg < 4:434417/140‑1 (MQ=255)
tGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGGTTTTT‑GGCGGTTTACGCCCACCGCTCCATATGAAACCTACCGCCCCATATATTCCCCGCCcgcg > 1:396292/1‑140 (MQ=255)
gccgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑ccc > 6:614078/1‑83 (MQ=255)
gccgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGGCCAGCGATCCATATGAAAGCTACCGCCCCAAATCTGCCACGCCAGCgg > 6:688505/1‑140 (MQ=255)
gccgccCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCgg < 1:218197/140‑1 (MQ=255)
gccgccCAGCTAAACGTACTCAGTGAGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCgg < 6:1056748/140‑1 (MQ=255)
cgcaCAGCTAAACGTACTCCGGGAGCCGGAGGTCGAGGCACCTGCCCGCCAACTCTCTTTGGCTGGTCGCGTGTTTTT‑CCCGTTTTCCGCCCAGCGAGCCATATGAAAGCTACCGCCCCATATCTGCCAAGCCAGCGGTg < 2:285701/140‑1 (MQ=255)
aaCGTACTCCGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCTTATCTGACACGCCAGCGGTGCA‑CCgtagac < 6:838076/140‑6 (MQ=255)
aaCGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCA‑CCGACGcc < 3:121476/140‑1 (MQ=255)
cGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTGCGACCAGCCAGACAAAAGAAAACTACCGCCCCCAATAAGCCCCGCCAGCGGAGGA‑CCGACGcccc > 5:171480/1‑138 (MQ=255)
cctccgggAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCA‑CCGACGCCACGTc < 1:543830/133‑1 (MQ=255)
aCTCATTGAGCCGGAGGGCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCA‑CCGACGCCACGTc < 2:431260/140‑1 (MQ=255)
aCTCAGTGCGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGCCCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCA‑CCGACGCCACGTc < 1:124588/140‑1 (MQ=255)
aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCA‑CCGACGCCACGTc < 3:872975/140‑1 (MQ=255)
aCTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGATTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCA‑CCGACGCCACg < 7:994525/138‑1 (MQ=255)
cTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTT‑CCCGGTTTCCGACCCGCGATCCCTATGAAAGCTACCGCCCCATATCTGCCCCGCCCGCGGGGCA‑CCGCCGCCCCGTcc > 2:8112/1‑140 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAATCAACCGCCCCATATAATCCACGCCAGCGGTGCC‑CCCACGCCACGTccc > 1:1127762/1‑140 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTAACGCCCCATATCAGCCACGCCCGCGGTGCA‑CCGACGCCCCGTccc > 5:861540/1‑140 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGGTTTCCGACCAGCGCTCCATATGAAAGCTACCGCCCCATATCTGCCACGCCCGCGGTGCC‑CCGCCGCCCCGTccc > 3:984966/1‑140 (MQ=255)
tCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGACTTTTT‑CCCCTTCTCCGCCCAGCGATCCAAATGACAGCTTACCCCCCATATATGCCACGCCCGCGGTGCA‑CCCACCCCACGTcac > 3:165384/1‑138 (MQ=255)
cAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCGTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGATACCGCCCCATATATGCCACGCCAGCGGTGCA‑CCGACGCCGCGTcc > 8:1009766/1‑138 (MQ=255)
cAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTAGTTTT‑CCCGTTTTCCAACAATCGATCCATATGAAAGCAACCGCCCCATATATGCCACGCCAGCGCTGCC‑ACGACGCCACCTccgc > 6:474640/1‑138 (MQ=255)
gTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCAATATCTGCCACGCCAGCGGTGCA‑CCGACGCCACGTCCCCgg < 1:80282/140‑1 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCAAATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCA‑CACACGCCACGTCCCCGGc > 6:543710/1‑140 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCGTTTT‑CCCGGTTTCCGCCCAGCGCTACCTATGAAAGCGACCGCCCCATATCTGCCCCGCCCGCGGGGCC‑CCGACCCCCCGTCCCCggg > 6:777828/1‑139 (MQ=255)
tGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCCCCCCAAATATTCCAAGCCAGCGGTGCC‑CCGGCGCCCCCTCCCCGGc > 1:713173/1‑140 (MQ=255)
tGAGCCGGAGGTCGAGGCACATGCCAGCCAACTCTCTTTGGCTGGTCGCGGAGTTTT‑GCCGATTTCCGACGACAGATCCATATTAAAGCTACCGCCCCATATCTTACACGCCAGAGGTGCA‑CCGACGCCAACACCCCGGc > 4:866143/1‑140 (MQ=255)
ccGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCA‑CCGACGCCACGTCCCCGGCTaaa < 5:546344/140‑1 (MQ=255)
cGGAGGGCGAGGCACCTTCCAGCCAACTCTCTTTGGCTGGTCGCGTCTATTT‑CCCGTGTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCA‑CCGACGCCACGTCCCCGGCTaa < 7:600404/138‑1 (MQ=255)
aGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCA‑CCGACGCCACGTc < 5:106989/126‑1 (MQ=255)
aGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCGTTTT‑CCCGGTTTACGACCCGCGATCCATATGAAAGCTACCGCCCCAAAACTGCCACGCCAGCGGTGCACCCCAGCCCACG‑CCCCGGCGAAACAGc > 2:506519/1‑140 (MQ=255)
gTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGGCTTTTT‑GCCGTTTTACGCCCAGCGAACCATATGACAGCTACCGCCCCATATCTGCCACGCCCGCGGGGCA‑CCGACGCCACGTCCCCGGCTAAACatc > 7:271773/1‑136 (MQ=255)
gCACCTGCCAGCCAACTCTGTTTGGCTGGGCGCGTCTTTTT‑CCCGGTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCA‑CCGACGCCACGTCCCCGGCTAAACAGCTTATTg < 8:71126/138‑1 (MQ=255)
ccTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCA‑CCGACGCCACGTCCCCGGCTAAACAGCTTATTGAcc < 8:1006416/138‑1 (MQ=255)
cTGCCAGCCAACTCTCTTTGGCTGGTCGCGTATTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTAACGCCCCATATCTGCCCCGCCAGCGGTGCA‑CCGCCGCCACGTCCCCGGCTAAACAGCTTATTGACCCGc > 4:54521/1‑140 (MQ=255)
tGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCTGTGCA‑CCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCt < 1:248733/140‑1 (MQ=255)
tGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCA‑CCGACGCCACGTccc > 2:96571/1‑115 (MQ=255)
gccagccaACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCA‑CCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTg < 2:618025/140‑1 (MQ=255)
gccagccaACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGGTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCA‑CAGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTg < 6:744869/140‑1 (MQ=255)
aaCTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTAACGCCCCATATCTGCCACGCCAGCGGTGCA‑CCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGt < 3:444980/140‑1 (MQ=255)
aCTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCA‑CCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGtt < 4:574329/140‑1 (MQ=255)
ctctctTTGGCTGGTCGCGTATTTTT‑CCCGTTTTACGACCAGCGATCCATATGTAAGCTACCGCCCCATATATGCCACCCCACCGGTGCA‑CCGACGCCACCGCCCCGGCTAAACAGCATAATTACCCCCTGGGTGCGttt > 4:549176/1‑140 (MQ=255)
tctctTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCA‑CCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTg < 4:63448/140‑1 (MQ=255)
tctctTTGGCTGGTCGCGTCGTTTT‑CCCGCTATCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCA‑CCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTg < 1:342601/140‑1 (MQ=255)
tctctTTGGCTGGTCGCGGCGTTTT‑CCCGTTTTCCGCCCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCCGCGGTGCA‑CCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGtt > 8:408825/1‑138 (MQ=255)
tctTTGGCTGGTAGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCTTATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCA‑CCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCt < 5:394298/140‑1 (MQ=255)
tGGCTGGTCGCGTCGTTTT‑ACCGTTTTACGACCAGCGATCCATATGAAAGCTACAGCCCCATATATGCCACTCCCTCGGTGCA‑ACGACGCCCCCTCCCCGGCTAAACAGCTTATTGAACCGCTGGGTGAGTTTGGTGa > 8:265651/1‑138 (MQ=255)
gTCGCGTCTTTTT‑ACCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCAGCCCCCCCCGCGGGGCA‑CCGACGCCCCGTCCCCGGCGTAACCGCGTATTGCCCCGCTGGGTGCGGTTGCTGATCAagcgg > 4:1097825/1‑139 (MQ=255)
gTCGCGGCTTTTT‑TCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCC‑CCCACGCCCCCGCCCCCGCTAAACACCGTATTGACCCGCTGGGTGGGTTTGGTGATCACGCGa > 2:601566/1‑140 (MQ=255)
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CCCCCCAAGCGGCAGCGTCAGACGGGTTTCACCCACCGCCTGATTATCGTATCCATATCCCGTTGCCGCCCAGCTAAACGTACTCAGTGAGCCGGAGGTCGAGGCACCTGCCAGCCAACTCTCTTTGGCTGGTCGCGTCTTTTT‑CCCGTTTTCCGACCAGCGATCCATATGAAAGCTACCGCCCCATATCTGCCACGCCAGCGGTGCA‑CCGACGCCACGTCCCCGGCTAAACAGCTTATTGACCCGCTGGGTGCGTTTGCTGATCACGCGACC > NZ_CP022686/3868709‑3868981
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
