Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F2 I0 R1
|
193 |
6708.0 |
8620653 |
98.5% |
8491343 |
136.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,331,940 |
A→C |
17.1% |
F289V (TTT→GTT) |
ybhR ← |
ABC transporter permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,331,940 | 0 | A | C | 17.1%
| 208.9
/ 15.5
| 132 | F289V (TTT→GTT) | ybhR | ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base A (66/41); new base C (3/22); total (69/63) |
| Fisher's exact test for biased strand distribution p-value = 9.35e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 139 total aligned reads displayed.
TTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGAATTTGATACGCCCA > NZ_CP022686/4331804‑4332078
|
ttCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAacac > 4:524299/1‑140 (MQ=255)
ttCAAATAAATCTGATTGGTAATGTCCGTAAAGTTGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGAGGGAATCATAAAGAAacacac > 6:231473/1‑140 (MQ=255)
cAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTTCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGAGGGCATCATAAAGACAAACACGc > 1:992562/1‑140 (MQ=255)
aaaataaatGTGGTTGGTATTGTCCGTAATGTGGCGAATTGTGTTATTCCACGTCTTTTTTTGACGCCACATTGGCTTGTTTTCCACCGGCGAAACGTAACCGTAAAGGAGAAGGGCGGGAATCATAACTACAAACACGc < 6:979262/139‑1 (MQ=255)
ataaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGa > 8:620913/1‑140 (MQ=255)
ataaatCTGATTTTTAATGTCGGTAAAGTGGCTAATAGGGTTAATCCATGTAATATTTTGCAGCCACATTGGCATGTGTTCAACCGGCTAAACGTAACCGTAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGa < 4:75659/140‑1 (MQ=255)
aaatCTGCTTGGTAATGTCCTTAACGTGGCTAATAGGGTTAATCCACGACAGATTTTGCACCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAATACAACCACGCCGATa < 6:778955/140‑1 (MQ=255)
atCTGCTTGGTAATGTCAGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATaaa > 3:36027/1‑140 (MQ=255)
tCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAAc > 4:913897/1‑140 (MQ=255)
tCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAAc > 4:94482/1‑140 (MQ=255)
tCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAAc > 2:301640/1‑140 (MQ=255)
ggttGGTAATTGCCGTAAAGTGGCTAATTGGGTTAATCCACGTCAGATTTTGCAGCAACTTTGGCATTTTTTCCACCGGCGAAACGTAACGGTAAAGGAGAAGGGCGGGCATCATAAACACAAACACGCCGATAAACGcc < 4:336226/138‑1 (MQ=255)
ttGGTAATGTCCGTAAAGTGGCGAATCGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTACCCGGAAAGGAGAATGGCGGGCATCATAAAGACAACCACGCCGATAAACGCctg < 4:390782/140‑1 (MQ=255)
ttAATGTCCGTAAAGTGGCTAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCTAAACGTAACCGTAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCctgctg < 8:760070/139‑1 (MQ=255)
gataTGTCCGTAACGTGGCGAATAGTGTTAATCCACGTCCGATTTTGCAGCCACTTTGGCATGTTTTCCACGGGCGAAACGTACCCGGAATGTATAATGGCGGGCATAATAAAGACAAACACGCCGATAAACGCctgctg < 8:641542/137‑1 (MQ=255)
gTAATGGCCTTAATGTGGCTAATCGGGTTATACCACGTAAGTTTTTGCAGCCACATTGGCATGTTTTCCACCGGCCAAACTTAACCGCAATGTACACTGGCGGGCATCATAAAGACAAACACGCCGATAAACGCctgctg < 6:621236/140‑1 (MQ=255)
tGTCAGTAATGTGGACAACTGGTTTAAACCACGACATATTTTCCAGCCACTTTGGCATGTTACCCACCGGCGAAACCTACCCGCAACGTACAAGGGCGGGCATCAAAAACACAACCACGCCGATAAACGCCTGCtgttgt < 2:887409/140‑1 (MQ=255)
gaccGTAAAGTGGCGAAACGGGTAAATCCCCGTCAGTTTTTGCCGCAACATTGTCTTTTTTTCCACCGGCTAAACGTAACCGCAAAGCACAAGGCCGGGCATCAAAAAGACAAACACGCCGATAAACGCCTGCtgttgtg < 8:118613/138‑1 (MQ=255)
tCCGTAAAGTGTCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCCACCGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAACCACGCCGATAAACGCCTGCtgttgggt > 6:656699/1‑140 (MQ=255)
tCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCCCATTCGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGAGGGCATCATAACGACAAACACGCCGATAAACGCCTGCtgatgtgt > 6:193046/1‑140 (MQ=255)
tCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCtgttgtgt > 2:218263/1‑140 (MQ=255)
tCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCtgttgtgt > 4:637299/1‑140 (MQ=255)
ccGTAACGGGGCTAATCGGGTTAATCCAGGGCATTTTTTGCAGCCACATTGGCATGTTTACCCCCGGCGAACCGTAACCGTAAAGGAGAATGGCGGGCATCATAAAGCCAAACACGCCGATAAACGCCTGCtgttgtgtt < 8:442605/140‑1 (MQ=255)
aaaGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAAc > 6:900137/1‑140 (MQ=255)
aaaGTGGCCAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAAc > 8:1003638/1‑140 (MQ=255)
acgggtcGAATCGGGTTAATCCACGTCTTATTTTGCCCCCACATTGGATTGTTTCCCCCCGGCGAAACTTAACCGGAACGGATATGGGCGGGAATAAAAAACACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACa < 4:6207/134‑1 (MQ=255)
tGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACagag > 2:770248/1‑140 (MQ=255)
tGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACagag > 1:1023769/1‑140 (MQ=255)
ggCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGt > 7:562192/1‑140 (MQ=255)
gCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGtg > 5:866993/1‑140 (MQ=255)
cGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCGGCTGTTGTGTTGAACAGAGtga > 5:883963/1‑140 (MQ=255)
tAGGTTAAATCCACGTCAGATTTTGCACCCACATTGGCATGTTTTCCCCGGGCCAACCTAACCCGCAAAGGAGAATGGCGGGCATAAAAAAGACAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGaa < 3:475991/140‑1 (MQ=255)
ggTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATc > 1:952495/1‑140 (MQ=255)
ttAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCaa > 7:227921/1‑140 (MQ=255)
ttAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCaa > 6:985495/1‑140 (MQ=255)
aTCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCTGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAg > 2:413669/1‑140 (MQ=255)
aTCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAg > 4:502960/1‑140 (MQ=255)
ccACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGAc < 4:554804/140‑1 (MQ=255)
cgggcAGTTTTTCCTGCCAATTTGCCTTGTTTGCCACCGGCTACAGGTACCCGCAAAGGAGAATGGCGGGCAGCATAAACCCAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCg < 4:985424/136‑1 (MQ=255)
atgTCATATTTTCCACCCAATTTGCCTTGTTTACCCCCGGCTAATCGTAACGGTAAAGGAGATTGGCGGGAAAAATAAAGACAAACACGCCGTTAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCg < 6:8309/138‑1 (MQ=255)
cGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAATGGAGAATGGCGGGCATCTTAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCgc > 1:388800/1‑139 (MQ=255)
cGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACACACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGAccta > 3:1056775/1‑138 (MQ=255)
cGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTTTTGTGTTGAACAGAGTGATGAAATCACcagacaga > 1:1061410/1‑140 (MQ=255)
cGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGa > 5:931863/1‑140 (MQ=255)
cGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGa > 3:223620/1‑140 (MQ=255)
cGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGa > 2:524732/1‑140 (MQ=255)
gTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAATACACACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACCGACCGaa > 7:749813/1‑140 (MQ=255)
tCATATTTTGCAGCCACTTTGTCATGTTTGCCACCGGCGAATTTTAACCGTAAAGTATAATGGGGGGAATAATAAAGAAAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAAt < 3:247250/140‑1 (MQ=255)
aTTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGATCAGAGTGAGGAAATCAACAGACCGAATcccc > 2:368763/1‑139 (MQ=255)
aTTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATcccc > 4:903120/1‑139 (MQ=255)
ttttGCCGCCACTTTGGCATGTATTCCACGCGATAAACGTAACCTGAATGTATATTGGCTGTAATAATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCccac < 1:868279/140‑1 (MQ=255)
ttttGCCGCCACATTGTCTTGTTTTCCACCGGCTAACCTTAACGGCAAAGTAGATTGGCGGCCATAATAAACACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCccac < 5:343151/140‑1 (MQ=255)
ttttGCCGCCAAATTGGCTTGTTTTCCACCGGCGAAACGTACCCGTAAAGGAGACTGGCGGCCATAATAAACACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCccac < 5:596218/140‑1 (MQ=255)
ttttGCAGCCTCATTGGCTTGTTTTCCACCGTCTAACCGTAACCGGAAAGGAGAATGGCGGGCAGCATAACCCCAACCAAGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCccac < 2:215660/140‑1 (MQ=255)
ttttGCAGCCAAATTGTCTTGTTTTCCCCGGTCTAATCGAACCCCCAAAGCATACTGGGGGGAAACATAAATACAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCccac < 1:52877/140‑1 (MQ=255)
ttttGCAGACAATTTGTATTGTTTTCCACGTGTCAAAGTTAACCCTAAAGCTGAATGGCGTTCATAAAAAAGCCAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCccac < 7:217943/140‑1 (MQ=255)
ttGCACCCACATTGGCATTTTTACCACCGGCCAAACGTACCCGCAAAGGAGAATGGCGGGCATCAAAAACACAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCccacca < 2:607303/140‑1 (MQ=255)
tGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAg > 1:637168/1‑140 (MQ=255)
gggaTGTTTTCCACCGGCGAAACGTAACCGGAACGGAGATTGGCGGGCATCAAAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTa < 1:221817/137‑1 (MQ=255)
aTGTTTTCCACCGGCGAAACGTAACCTGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCGGTTGAGATGAACAGCGTGATGAAATCAACAGACCGAATCCCACCAGGGAGAAACCGTAAac > 4:352931/1‑140 (MQ=255)
aTGTTTTCCACCGGCGAAACGAAACCGGAAAGGAGACTGGCGGGCATCATAAAGAAAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAac < 4:754532/140‑1 (MQ=255)
tGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAacc > 7:109641/1‑140 (MQ=255)
ttttCCCCCGGCTAAACGTAACCGTAAAGGAGATTGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAaccac < 8:733316/140‑1 (MQ=255)
ttttCCACCGGCGAAACGTAACCGTAAAGCATATGGGCGGGAATAAAAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAaccac < 8:374993/140‑1 (MQ=255)
ttttCCACCGGCGAAACGTAACCGGAAAGTAGAATGGCGGGCAGCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGCCCGAATCCCACCAGTGATAAACCGTAAcccac > 4:748023/1‑140 (MQ=255)
tttCCACCGGCTAAACTTAACCGTAAAGGATAATGGCGGGCATCATAAACAAAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAaccacc < 5:28065/140‑1 (MQ=255)
tttCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAaccacc > 4:1089456/1‑140 (MQ=255)
ccacGGCTACACGTATCCGCAACGGACTATGGCGGGCTACATAAACACAACAACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGCTGAAATCAACAGACCGAATCCCAACAGTGATAAACCGTAAACCACCATCg < 1:1067323/137‑1 (MQ=255)
cACGGGCTAAACGTAACCGTAAAGGATAAGGGCGGGCATAAAAAAGACAACCACGCCGATAACCGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCg < 5:345850/140‑1 (MQ=255)
cACCGGCTAAACGTAACCGTAAAGGAGAATGGCGGGAATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATGAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCg < 1:1035740/140‑1 (MQ=255)
cACCGGCTAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCg < 6:382478/140‑1 (MQ=255)
cACCGGCGAAACGTACCCGGAACGGAGATTGGCGGGCATCTTAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCg < 4:283603/140‑1 (MQ=255)
ccGGCGAAACGTCACGGGAATGGAGATGGGCGGGAATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTa < 3:768178/140‑1 (MQ=255)
ccGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTa < 4:352821/140‑1 (MQ=255)
gCGAATCGTAACCGGATAGGAGAATGGCGTGCTTCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTGGAACAGAGTGATCAAATCAACAGCCCGAATCCCACCAGAGATAAACCGTAAACCACCATCGGAAAg > 7:514843/1‑140 (MQ=255)
gCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGCAATCAACAGCCCGAAGCCCACCAGTGATAAACCGTAAACCACCATCGTaacg > 6:423333/1‑138 (MQ=255)
gCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTaaat > 2:995594/1‑139 (MQ=255)
gCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAg > 1:268912/1‑140 (MQ=255)
aaaCCGCAACGCATAATGGCGGGAATCATAAACACAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAGAACAg < 3:406915/139‑1 (MQ=255)
aCCGGAAAGGAGAATGGCGGTCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAGAACAgcc > 1:240623/1‑139 (MQ=255)
aCCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAGAACAgcg > 8:203508/1‑140 (MQ=255)
taatggATAATGGCGGGCATCAAAAAGAAAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAGAACAGCGCCAg < 7:699878/136‑1 (MQ=255)
aaGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAGAACAGCGCCAGCg > 5:668479/1‑140 (MQ=255)
aGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAGAACAGCGCCAGCGa > 3:524210/1‑140 (MQ=255)
ggAGAATGGCGGGCTTCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAGAACAGCGCCAGCGAt < 8:591116/140‑1 (MQ=255)
aaTGGCGGGCATCATAAAGCCAAACCCGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGCTAAACCGTAAACCACCATCGTAAATTAGCACAGCGCCAGCGATCCgg > 2:710198/1‑140 (MQ=255)
aaTGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGCCCGAATCCCACCAGTGATATAACGTAAACCACCATCGTATAGTAGTACAGCTCCACCGATCCgg > 1:347822/1‑140 (MQ=255)
aaTGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAGAACAGCGCCAGCGATCCgg > 3:886800/1‑140 (MQ=255)
tGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCg < 2:637168/140‑1 (MQ=255)
gggggCACAATAAACAAAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGaa < 7:46183/138‑1 (MQ=255)
ggCATCATAAAGACAAACACGCCGCTAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACCGACCGAATCACCCCAGTGATAAACCGTAAGCCACCATCGGAAAGTAGAACAGCGCCAGCGATCCGGCGAAggg > 3:885802/1‑140 (MQ=255)
actaCAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGAATTTGATa < 3:488520/137‑1 (MQ=255)
accaaaaaCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGAATTTGATa < 1:1057032/135‑1 (MQ=255)
aacaCAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGAATTTGATa < 5:228275/137‑1 (MQ=255)
aaGACAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGAATTTGATa < 4:559572/140‑1 (MQ=255)
aaGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGAATTTGATa < 2:1066807/140‑1 (MQ=255)
aaaaCCCGCCGATAAACGCCTGCTGTTGTTTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGAATTTGATACGcc < 1:885944/139‑1 (MQ=255)
aaCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGAATTTGATACGCCCa > 1:46030/1‑140 (MQ=255)
aaCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGAATTTGATACGCCCa > 2:771822/1‑140 (MQ=255)
aaCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAAGCAACAGCCCGAATCCCACCAGTGATAACCCGTACACCACCATCGTAAAGTAGACCAGCGCCAGCGATCCGGCGAAGGGAATTTGATACGCCCa > 6:450850/1‑140 (MQ=255)
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TTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAGAACAGCGCCAGCGATCCGGCGAAGGGAATTTGATACGCCCA > NZ_CP022686/4331804‑4332078
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
