Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F2 I0 R1
|
117 |
5184.3 |
6857682 |
98.3% |
6741101 |
135.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,368,341 |
T→G |
16.4% |
D47A (GAC→GCC) |
ybiY ← |
glycyl‑radical enzyme activating protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,368,341 | 0 | T | G | 16.4%
| 153.3
/ 10.7
| 101 | D47A (GAC→GCC) | ybiY | glycyl‑radical enzyme activating protein |
| Reads supporting (aligned to +/- strand): ref base T (31/51); new base G (16/2); total (47/54) |
| Fisher's exact test for biased strand distribution p-value = 1.24e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 105 total aligned reads displayed.
GGCAGCAGTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAATC > NZ_CP022686/4368204‑4368478
|
ggCAGCAGTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGtaa > 5:820958/1‑138 (MQ=255)
ggCAGCAGTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTcc > 5:176029/1‑139 (MQ=255)
ggCAGCAGTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCa < 6:712420/140‑1 (MQ=255)
gcagcaGTCGGTTAGCGCCGTAAAATGCTCCGTGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCAAGACAGAGTCGTGGGTCAt < 4:287087/140‑1 (MQ=255)
gcagcaGTCGGTTAGCGCCGTAAAATGCTCCGGGTTTAACTTTTCCAGATGAATAAGCACACCATTCATCGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTc < 2:874319/138‑1 (MQ=255)
cagcagTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGtga > 1:243224/1‑136 (MQ=255)
cagcagTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGtga > 1:368248/1‑136 (MQ=255)
agctgTGGGTTAGCGCAGTAAAATGCTCCGGGGTTAACTTTTCCCTATGAATAAGCAAACCATTCTACGCGCGCTCAATCACTTCCTGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCAt < 8:521763/138‑1 (MQ=255)
agcagTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCTCTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCAt < 8:711223/138‑1 (MQ=255)
agcagTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAc < 4:594721/140‑1 (MQ=255)
agcagTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAc < 3:218690/140‑1 (MQ=255)
cagTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAcag < 4:413680/140‑1 (MQ=255)
cagTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAc < 8:161597/138‑1 (MQ=255)
cagTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGAATAcac > 4:34088/1‑139 (MQ=255)
cagTCGGTGAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAcag < 6:450661/140‑1 (MQ=255)
aattCGGTTAGCGCCGTAAAATGCTCCGGGGTTAAATTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAc < 1:486440/135‑1 (MQ=255)
gTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAACCCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAcagca > 4:596954/1‑140 (MQ=255)
gTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGGATAccc > 8:265254/1‑136 (MQ=255)
gTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTAAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCCCAGCTTACCGCCTTCCAGACAGAGTCGTGGGGCATAcac > 2:404933/1‑137 (MQ=255)
gTCGGGTAGCTCCGTATAATGATCCGGGGTTTACTTTTCCCGATTAATAAGCAATCCATTCAACGCGCGATCAAGCACTTCCGGTGCGGTCTTAGCGCACAGGTTACAGCCTTCCAGACAGAGTCGTGGGTCATAcagca < 4:377029/140‑1 (MQ=255)
gTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATc < 4:330720/140‑1 (MQ=255)
ccGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGAGCCggcg > 1:95160/1‑138 (MQ=255)
aaaTGCTCCGGGTTTAACTTTTCCCGATGACTAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACATCTTACAGCCTTCCAGACAGAGTCGTGGGGCCTACAGGCTCTCCTGCGTGCgg > 8:318766/1‑138 (MQ=255)
aaaTGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGAGGGTCATACAGCAGATCCTGCGTGCgg > 7:134753/1‑138 (MQ=255)
aaTGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCACCGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCggg < 1:400478/138‑1 (MQ=255)
aaTGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCCTACAGCAGATCCTGCGTGCggg > 8:156624/1‑138 (MQ=255)
tGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCAAAAAGCAGATACTGCGTTCGGGcgcg > 3:768581/1‑140 (MQ=255)
tCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGCATACAGCAGATCCTGCGTGCGGGCGCGGcg > 3:767425/1‑139 (MQ=255)
ggggTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTc < 4:826988/140‑1 (MQ=255)
gggTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAAAGCAGATCCAGCGTGCGGGCGCGGCgtt > 1:829676/1‑138 (MQ=255)
gggTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGGCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCttt < 1:733056/138‑1 (MQ=255)
cTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGCTCCTGCCTGCGGGCGCGGGGTTCCGGGtt > 1:251322/1‑138 (MQ=255)
cTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATACAGCGTGCGGGCGCGGCTTTACGGGtt > 2:600105/1‑138 (MQ=255)
ccggATGAATAAGCACACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTTGCGCACAGCTTACAGCCTTGAAGTCTGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGtcac < 6:330814/137‑1 (MQ=255)
ccGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTTCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCAAAAAGCAGATCCATCGTGCGGGCGCGGCGTTCCGGGTTATGaaa > 7:625169/1‑136 (MQ=255)
gAATGAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCCTACAGCCTATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCCGc > 2:589007/1‑138 (MQ=255)
aTAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTAGGCCACCAGCgg > 2:21899/1‑138 (MQ=255)
ccATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGTGTGATACCGCAGCTCCTGCGTGCGGGCGCGGCGTTACGGGGTATGACACCAGCGGCAGCCCcgcgg > 5:703713/1‑139 (MQ=255)
ccATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCGTTCCGGGTTCTGACCCCACCGGCCGCCCacc > 8:508724/1‑136 (MQ=255)
ccATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCAGCGTGCGGGCGCGGGGTTCCGGGTTGGGACACCCGCGGCAGCCCAGc > 7:12693/1‑138 (MQ=255)
caatCAACGCGCGCTCAATCACTACCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCg < 1:442502/135‑1 (MQ=255)
cATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGGTCTGTCACCAGCGGCAGCCCAGCg < 7:603747/138‑1 (MQ=255)
aTTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGCAGACAGCCGATCCTGCGTGCGGGCGCGGCTTTCCGGGGTGTGCCACCCGCGGCCGccccccgcac > 6:322350/1‑133 (MQ=255)
cAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTACGGGTTCTGACCCCAGCGGCCGCCCCGCGcaca > 1:550191/1‑138 (MQ=255)
aaCGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGCATACAGCAGATCCTGCGTGCGGGCGCGGGGTTACGGGGTCTGACACCAGCGGCCGCCCCGCGAACAGcc > 3:661503/1‑140 (MQ=255)
cgctatCAATCACTTCCGTTGCGGTCTTAGCGCACAGATTACAGCCTTCCAGACAGAGTCGTGGGTCATAAAGCAGATCCTGCGTGCGGGCGCTGCTTTCCGGGTTCTGACACCAGAGGCAGCCCAGCGAACAGCCTTTa < 6:455483/135‑1 (MQ=255)
cgcgcgCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCTGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCtt < 1:732426/138‑1 (MQ=255)
cgcgcgCAATCACTTCCGGAGCGGTCTTAGCGCACAGCTAACCGCATTCCAGACAGAGTCGTGGGTCATACAGCAGAGCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCtt < 2:378761/138‑1 (MQ=255)
cgcgcTCAATCTGTTCCGCCGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGGGGCTTTCCGGGTTGTGACACCAGCGGCAGCCCTGCGAACAGCCTTTa < 6:511309/140‑1 (MQ=255)
cgcgcTCAATCACTTGCGGAGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTa < 6:460019/140‑1 (MQ=255)
cgcgcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCtt < 1:185494/138‑1 (MQ=255)
cgcgcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCtt < 2:664960/138‑1 (MQ=255)
cgcgcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCtt < 1:680182/138‑1 (MQ=255)
cgcgcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCtt < 1:713214/138‑1 (MQ=255)
cgcgcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTa < 6:10068/140‑1 (MQ=255)
cgcgcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGATTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCtt < 1:444086/138‑1 (MQ=255)
cgcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTa < 7:452659/138‑1 (MQ=255)
gcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATACTGCGTGCGGGCGCGGGGGTACGGGTTGTGACACCAGCGGCCGCCCCGCGAACAGCCGTTaa > 2:56486/1‑138 (MQ=255)
aaTCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGGGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATa < 6:157998/140‑1 (MQ=255)
cACTTCCGGTGCGGGATTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATAc < 2:803223/138‑1 (MQ=255)
cACTTACGGTGCGGTCTTAGCGCACAGCTTCCAGCCTTCAAGACAGAGTCGTGGGCCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTGCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATAc < 2:803220/138‑1 (MQ=255)
aCTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGAc < 4:817197/140‑1 (MQ=255)
aCTTCCGGGGCGGTCTTCGCGAACAGCTTACAGCCTTCCAGCCAGAGGCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACGAGCGGCTGCCCAGCGAACAGCCTTTATGAAATACGAc < 6:827961/140‑1 (MQ=255)
ccGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGGATAAAGCAGCTCCTGCGTGCGGGCGCGGCGGTGCGGGGTGTGGCCCCCCCGGCAGCCCCGCGAACAGCCGTTAAGAAATACTACCggg > 3:441687/1‑138 (MQ=255)
ggTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCCTGCGGGCGCGGCGTTCCGGGTTGTGACACCAGCGGCAGCCCCGCGAACAGCCTTTAAAAAATACGACCCTg > 2:848905/1‑138 (MQ=255)
cGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGGATACAGGAGATACTGCGTGCGGGCGCGGCTTTCCGGGTTGTGACACCAGCGGCAGCCCAGAGAACAGCCGTTAAGAAATAAGACCGTGCGGa > 1:657227/1‑138 (MQ=255)
ggTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGGGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGAt < 2:869518/138‑1 (MQ=255)
cTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTGATACCGCAGATAATGCGTGCGGGCGCGGCGTTCCGGGTGGTGACACCACCGGCAGCCCAGCCCCCCTCCAGAAAGAAATACCACCGGGCgggtccc > 2:512536/1‑133 (MQ=255)
tAGCGCACAGCTTACAGCCTTCCTGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCgggg < 5:110150/140‑1 (MQ=255)
tAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCTGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCgg < 2:449279/138‑1 (MQ=255)
tAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCgggg < 3:395907/140‑1 (MQ=255)
tAGCGCACAGCGTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCGGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCgg < 7:321523/138‑1 (MQ=255)
caGCTTACAGCCTTCCAGACAGAGTCGTGGGTGCTACAGGCGGAACTGCGTGGGGGCGCGGCTTTCCGGGGTCTGACCCCAGCGGCCCGCCCGCGAACAGCCTTTAAGAAAAACCCCCGTGCGGATTCCGGGGCcctcag > 4:622286/1‑139 (MQ=255)
caGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATTCAGCCGATCCAGCGGGCGGGGGCGGGTTTGCGGGTTATGACCCCAGCGGCAGCCCCCCGAACAGCCATTAAGAAATACGGCCGTGCGGATACCCGGGcccacat > 4:564566/1‑135 (MQ=255)
caGCTTACAGCCTTCCAGACAGAGTCGTGGGGGATACAGCAGATCCTTCGTGCGGGCGCGGCTTTGCGGGGTCTGACACCAGCGGCAGACCACAGAACCTCCGTTAAGAAAGACGAGCGGGGGGGTAAAGGGGccctgct > 4:72370/1‑135 (MQ=255)
tctaaCAGCCTTCCAGACAGAGTCGTGTGTAAAAAAAAAAATACATCGTGCGGGCGCGGCGTTGCGGGGTCTGACCCCAGCGGCCGCCCACCGCACAGCCGTTAAGAAATACGACCGTGCGGGTACCGGGGCcctcag > 2:414095/5‑137 (MQ=255)
gCTTACAGCCTTCCAGACAGAGTCGTGGGGGAGAACGCCGATACGGCGTGCGGGCGCGGGGGTCCGGGGTTTGGCCCCCGCGGCCGCCCCGCGGCCAGCCAGTAAGAAAATCGACCGTGCCGGTACCGGGGCcctcaa > 2:44769/1‑137 (MQ=255)
cTTACCGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATggg < 4:52272/140‑1 (MQ=255)
cTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATg < 7:508724/138‑1 (MQ=255)
cTTACAGCCTTCCAGACAGAGGCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCCAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATg < 2:641270/138‑1 (MQ=255)
cAGCCTTCCAGACAGAGTCGTGGGGGATAACGCAGATCCTGGGGGCGGGCGGGGGGTTCCGGGGTGTGGCCCCCGGGGGGGGCCCGCGGACAGGCGTTAAGCTATAAGCCCGGGCGGGGTCCGGGGCCCGCATggggg > 2:89839/1‑136 (MQ=255)
aGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCg < 8:222374/138‑1 (MQ=255)
aGCATTCCAGACTGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTGCAGGGTTCTGACACCAGCGGCAGCCAAGCTAACAGCCTTTCAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAg < 6:679772/140‑1 (MQ=255)
tCCAGACAGAGTCGTGGGTGATACACCAGATGCTGAGTGCGGGCGCGGCGTTCCGGGTTCTGACACCCCCGGCAGCCCAGCGAACAGCCGTTAAGAAATACGACCGTGCGGCTACCGGGGGCATAAATGGTCGAGTATCg > 4:480698/1‑140 (MQ=255)
tCCAGACAGAGTCGTGGGGCATACAGCAGATCCTGCGTGCGGGCGCGGCGTTCCGGGGTCTGACACCAGCGGCAGCCCCGCGAACAGCCGTTAAGAAATACGACCGTGCGGATACCGGGGCCCTCATGGGTGGAGTAGCg > 4:818671/1‑140 (MQ=255)
tCCAGACAGAGTCGTGGGGCATACAGCAGATACTGCGTGCGGGCGCGGCTTTCCGGGTTCGGACCCCAGCGGCAGCCCCGCGAACAGCCTTTAAGAAATACGACCGGGCGGATACCGGGGCCCTCAAGGGTCGAGGAGCg > 4:354483/1‑140 (MQ=255)
cagacagaGTCGTGGGTCCAAAACCAGCTACAACGAGCGGGCGCGGCGTTAAGGGGTCTGACACCAGCCCCCACCCACCGGAAAACCGTTAATAAATACGACCCGGCGGAGACCGGGGGCAGCATGGGTCGAggatcg > 8:445229/1‑133 (MQ=255)
cagacagaGTCGTGGGTCATACAGCAGATACAGCGTTCGGGCGCCGCGTTACGGGGTCTGTCACCAACGGGCGCCCAGCGAAAAGCCTTTAAGAAATAAACCACGGCGGTTAGCGGGGCCATACTGGGTGGAGTAggg > 8:301955/1‑136 (MQ=255)
cagacagaGTCGTGGGTAATTCAGCAGATGCTGCGTGCGGGCGCGGCTTTCCGGGTTATGCCACCACCGGCAGCCCAGCGAACAGCCGTTATCAAAAACGACCCTGCGGCTACCGGGGGCATCAAGTGTAGAGTAgag > 2:54853/1‑136 (MQ=255)
gacagaGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGtt < 2:368248/138‑1 (MQ=255)
cttCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCTGCTTTCCGGGTTCTGACACCTGCGGAAGCCCAGCGAACAGCCTTTATTAAATACGTCCGTTCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATAtt < 4:538432/138‑1 (MQ=255)
agTCGTGGGTGATAAAGCAGATCCTGAGTGGGGGCGCGGCGGTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCGTTAAGAAATACCCCCGTGCGGAGACCGGGGCCATCAAGGGTCGAGGAGCGGTGAATAtt > 4:714162/1‑140 (MQ=255)
agTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGaca > 2:217360/1‑56 (MQ=255)
agTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGaca < 1:217360/56‑1 (MQ=255)
agTCGTGGGTAATACAGCAGATACTGCGTGCGGGCGCGGCTTTCCGGGTTATGACCCCAGCGGCAGCCCAGCGAACAGCCATTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGGCGCGGTTCGTTGAAAAtt > 4:495206/1‑140 (MQ=255)
tCGTGGGTGATACAGCAGATCCTGCGGGCGGGCGCGGGGTTGCGGGTTCTGACACCAGCGGCCGCCCCGCGAACCGCCGTTAAGAAATACGCCCGGGCGGGTACCCGGGCCCTAATGGGGGGAGTAGCGGTGAATAtt > 2:116521/1‑138 (MQ=255)
tCGTGGGTCATACAGCAGCTACTGCGTGCGGGCGCGGCTTTCCGGGGTCGGACCCCCGCGGCCGCCCCGCGCACCGCCTTTAAGAAATACGGCCGTGCGGATACCGGGGCCATCATGGGTAGTGGATCGTGGTATAtt > 8:615470/1‑138 (MQ=255)
cGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTg < 8:704338/138‑1 (MQ=255)
cGTGGGTCATACAGCAGAGCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGaa < 4:289922/140‑1 (MQ=255)
cGTGGGGCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGaa < 6:394053/140‑1 (MQ=255)
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GGCAGCAGTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAATC > NZ_CP022686/4368204‑4368478
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
