Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F2 I0 R1
|
252 |
7301.5 |
9636800 |
98.5% |
9492248 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,368,341 |
T→G |
17.5% |
D47A (GAC→GCC) |
ybiY ← |
glycyl‑radical enzyme activating protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,368,341 | 0 | T | G | 17.5%
| 180.5
/ 18.2
| 131 | D47A (GAC→GCC) | ybiY | glycyl‑radical enzyme activating protein |
| Reads supporting (aligned to +/- strand): ref base T (44/62); new base G (19/6); total (63/68) |
| Fisher's exact test for biased strand distribution p-value = 3.24e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 132 total aligned reads displayed.
GGCAGCAGTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATA‑CCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAATCAT > NZ_CP022686/4368204‑4368480
|
ggCAGCAGTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCa > 6:290005/1‑140 (MQ=255)
ggCAGCAGTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCa < 4:132464/140‑1 (MQ=255)
gcagcaGTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCAt < 5:652259/140‑1 (MQ=255)
gcagcaGTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCAt < 3:373913/140‑1 (MQ=255)
gcagcaGTCGGTTAGCGCCGTAAAATGCTCCGGGGGTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCAt < 7:954956/140‑1 (MQ=255)
cagcagTCGGTTAGCGCCGTAAAATGCTCCGGGGTTACCTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACCGCCTTCCAGACAGAGTCGTGGGTCa > 2:514260/1‑138 (MQ=255)
cagcagTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACCGCTTACAGCCTTCCAGACAGAGTCGTGGGTCa > 2:232491/1‑138 (MQ=255)
cagcagTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCCTa > 8:254589/1‑140 (MQ=255)
agcagTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAc < 6:134741/140‑1 (MQ=255)
agcagTCGGGTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAc < 5:470056/140‑1 (MQ=255)
cagTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAcag < 4:1201683/140‑1 (MQ=255)
cagTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGGCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAcag < 5:950143/140‑1 (MQ=255)
aagTCGGTTATCGCCGTAAAATGCTCCGGGGTTAACTTTTCCAGATGAATAAGCAAACCATTCAAAGCGCGATCAATCACTTCCTGTGAGTTGTTAGCTCACAGCTTACAGCATTCCAGACAGAGTAGTGGGTCATaacg > 6:861791/2‑137 (MQ=255)
gTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAcac > 1:1016554/1‑137 (MQ=255)
ttAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCAAACAGCAGaa > 1:696310/1‑137 (MQ=255)
gcgcCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCCTGGGTCTTACAGCAGGACCtgg > 3:1137089/1‑139 (MQ=255)
gcCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTGATACAGCAGATccagg > 2:169065/1‑135 (MQ=255)
gcCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGCTCCtgcgt > 8:717241/1‑140 (MQ=255)
gcCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGCAGTCAGCAGATCCtgc > 2:107042/1‑138 (MQ=255)
gTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCtgcgtgcg > 8:426484/1‑140 (MQ=255)
aTGCTCCGGGGTCAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGgcgc < 6:972188/140‑1 (MQ=255)
gCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCgg < 3:813029/140‑1 (MQ=255)
cTCCGTGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGc < 4:1066794/140‑1 (MQ=255)
cTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCATATCCTGCGTGCGGGCGCGGc < 8:514263/140‑1 (MQ=255)
ggggTTAACTTTTCCCGATGATTAAGCAAACCATTCAACGCGCTCTCAATCACTTCCTTTGCGGTCTTAGCGCACAGCATACAGCCTTCCAGTCAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTc < 4:302893/140‑1 (MQ=255)
gtgTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGAGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTcc < 6:1167403/138‑1 (MQ=255)
gggTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCAGACCTCAGATCCTGCGTGCGGGAGCGGCtat > 2:782935/1‑136 (MQ=255)
gggTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGCATACAGCAGATCCTGCGTGCGGGCGCGGCttt > 1:507778/1‑138 (MQ=255)
cccGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGAATACAGCAGATCCAGCGTGCGGGCGCGGCGTTACGGGTTCTGaa > 1:759084/1‑137 (MQ=255)
gATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACAcc < 2:231196/138‑1 (MQ=255)
tGAATAAGCACACCAATCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAg < 1:221204/138‑1 (MQ=255)
taaTAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGGGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGc < 1:560757/137‑1 (MQ=255)
gAATAAGCAAACCATTCAACGCGCGCGCAATCACTTCCGGTGAGGTCTTAGCGCACAGCTTACAGCCTTCCCGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCgg < 3:111706/140‑1 (MQ=255)
aaaaGCAAACCATTCAACGCGCGCACAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCgg < 1:974216/136‑1 (MQ=255)
cAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGcc < 1:615595/138‑1 (MQ=255)
cAAACCAGTCCACGCGCGCTCAATCACTTCCGGGGCGGGCTTAGCGCACAGCTTACAGCCTTCCAGACAGTGGCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTGTGACTCCAGCGTCAGCCCa < 7:1051124/140‑1 (MQ=255)
aaCCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGCAAACAGCAAATCCAGCCTGCGGGCGCGGCTTTACGGGTTGTGACACCACCGGCAGCCCAGc > 3:1000683/1‑140 (MQ=255)
cATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGaa < 5:414337/140‑1 (MQ=255)
cATTCAACGCGCGCTAAATCACTTCCGGTGCGGTCTTAGCGCAAAGCTTACAGCCTTCCAGACAGCGTCGTGGGGCATACAGCAGATCCTGCGTGCTGTCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGaa < 5:683839/140‑1 (MQ=255)
cATTCAACGCGATCTCAATCAATTCCCGTGGGGTCTTAGCGCACAGATTACATCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGTCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGaa < 6:748177/140‑1 (MQ=255)
aaTTCAACGCGCGCTCAACCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGaa < 4:489326/139‑1 (MQ=255)
aTTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCTCACAGCTTACAGCCGTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGAGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAAc < 3:764151/140‑1 (MQ=255)
ttCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCGTACAGCCTTCCAGACAGAGTCGTGGGGCAAACACCACATCCTTCGGTGGGGCGCGGCGTTCCGGGTTGAGACCCCACCGGCAGCCCAGGGaaaa > 5:1102058/1‑138 (MQ=255)
aaCGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGAAACTGCGTGCGGGCGCGGCGTTCCGGGTTGAGACCCCAGCGGCAGCCCCGCCAAAAGcc > 3:768029/1‑140 (MQ=255)
aaCGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCAAAAAGCAGATCCAGCGGGCGGGCGCGGCGTTCCGGGGTGTGCCACCACCGGCAGCCCAGCGCACAGcc > 6:156937/1‑140 (MQ=255)
cgcgcgCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCCGATACTGCGTGCGGGCGAGGCTTTACGGGGTCTGACCCCCGCCGCGCCCCAGCGCACCGCCtt > 4:982034/1‑140 (MQ=255)
cgcgcgCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCACATCAAGCGTGCGGGCGCGGCTTTACGGGGTATGACCCCAGCGGCAGCCCCGCCAACAGccgg > 6:195319/1‑138 (MQ=255)
cgcgcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCtt < 1:31922/138‑1 (MQ=255)
cgcgcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTa < 8:822193/140‑1 (MQ=255)
cgcgcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTa < 7:762079/140‑1 (MQ=255)
cgcgcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTa < 6:342286/140‑1 (MQ=255)
cgcgcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTa < 5:144324/140‑1 (MQ=255)
cgcgcTCAATCACTTCCGGTGCGGTCTTAGCGAACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTATGACACCAGCGGCAGCCCAGCGAACAGCCTTTa < 5:1113142/140‑1 (MQ=255)
cgcgcTCAATCACTTCCGGTGCGGGCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTGCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTa < 4:860875/140‑1 (MQ=255)
gcgcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTGTCAGGGTTCTGCCACCAGCGGCCGCCCACCGAAAAGCCTTTaa > 8:840035/1‑140 (MQ=255)
gcgcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGCATAACCCAGATCCTGCGTGCGGGCGCGGCTTTACCGGTTATGACAACACCCGCACCCCAGCGCACAGCCATTaa > 6:819909/1‑140 (MQ=255)
gcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTGGAACAACAGATACAGCCTGCGGGGGCGGGGTTACGGGTTGTGACACCCCCGGCAGCCCAGCGCACAACCGTTaa > 1:536013/1‑138 (MQ=255)
aaTCAGTTCGGGTGCGGTCTTAGCGCACAGCTTAAAGCCTTCCAGACAGAGTCGTGGTTCATACAGCAGATCCTGCGGGCGGGCGCGGCTTTCCGGTTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATa < 5:99450/140‑1 (MQ=255)
agttCCGTTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGCGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGGTCTGACACCAGCGGCAGCCCAGCGAACAGCGTTTAAGAAATACGAc < 5:681593/138‑1 (MQ=255)
ggTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCGTTACGGGGTGTGACACCAGCGGCCGCCCAGCGAACACCCTTTAAGAAATACGACCGTGCg > 3:764823/1‑140 (MQ=255)
ggTGCGGTCTTAGCGCACAGCTTACAGCCTACCAGCCAGAGTCGTGCGGGATACAGCACCACCAGCTTGAGCGGGCCGCTTTCCGGGAGCTCACCCCAGAGGCACCCCAGAGGCCAGCAGATAATAAAAACCACCCTGCg > 6:302634/1‑140 (MQ=255)
tGCGGTCTTAGAGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCCTAACGCAGAACCTGCGTTCGGGCCCGGCGTTACGGGGTGTGACACACGCGGCAGCCCACCGGACAGCCATTAACCAATAAGACCCTGCggg > 6:1004393/1‑139 (MQ=255)
gTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCCTACAGCAGATCCTGCGTGCGGGCGCGGCGTTACGGGGTGTGACACCCGCGGCAGCCCCGCGAACACCCTGTAAGAAATAAGACCGTGCGGTTaac > 3:95151/1‑138 (MQ=255)
tAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCTGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATA‑CCgggg < 5:290005/140‑1 (MQ=255)
tAGCGCACAGATTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCGTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCATTTAAGAAATACGACCGTGCGGATA‑CCgggg < 5:17338/140‑1 (MQ=255)
cacaGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGCCACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATA‑CCGGGGCcatc < 6:200215/140‑1 (MQ=255)
caGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGCTCCTGCGTGCGGGCGCGGCGTTCCCGGTTCTGGCCCCCGCGGCCCCCCAGCGCACAGACATTAATAAATACGGACGTGCGGCTA‑CCCGGGCcatcat > 8:389170/1‑140 (MQ=255)
caGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGCTCCAGCGTGCGGGCGCCGCGTTCCGGGTTATGACACCCGCGGCGCCCCAGCGAACAGCCGTTTAGAAATAAGACCGTGCGGATT‑CAGGGGCcatcat > 4:559424/1‑140 (MQ=255)
caGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATA‑CCGGGGCcatcat < 3:330542/140‑1 (MQ=255)
caGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAACGCAGATCCGGCGTGCGGGCGCGGCGTTCCGGGTTCTGAACCCAGCGGCCGCCCAGCGAACAGCCATTAAGAAATACGACCGGGCGGCTA‑CCCGGGGcctcat > 4:437141/1‑140 (MQ=255)
caGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAAAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACCCCAGCGGCAGCCCAGCGAACCGCCTGTAAGAAATACGCCCGTGCGGATA‑CCGGGGGcaacat > 4:60536/1‑140 (MQ=255)
caGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAAAGCAGAACCAGCGTGCGGGCGCGGGGTTACCGGGTATGGCACCACCGGCAGCCCAGCGCACAACCGTTAATAAATAAGACCGGGCGGATA‑CCCGGGCaatcaa > 4:330542/1‑139 (MQ=255)
caGCTTACAGCCTTCCAGACAGAGTCGTGGGGGATACCGCAGATCCAGCGGGCGGGCGCGGGGTGCCGGGTTCTGACCCCAGCGGCCGCCCAGCGAACAGCCGTTTAGAATTACGACCGGTCGGGTACCCGGGGccacca > 8:448557/1‑140 (MQ=255)
gCTTACAGCCTTCCAGACAGAGTCGTGGGTGATAAATCAGATCAATAGTGAGGGCGCGGCTTTCCCGGTTCTGACACCACCGGCCGCCCCGCGCAACGCCTTTAATAAATTCGCCCGGTCGGAGA‑CCCGGTCcataat > 2:855729/1‑138 (MQ=255)
gCTTACAGCCTTCCAGACAGAGTCGTGGGTCGTACCCCAGATCCAGCGTGCGGGCGCGGCTGGCCGGGTTGTGACCCCAGCGGCCGCCCCGCGAACCGCCGTTAATAAATACTACCGTGAGGCTA‑CCGTGGGcataat > 2:336278/1‑138 (MQ=255)
gCTTACAGCCTTCCAGACAGAGTCGTGGGTCATTCAGCAGATCCTGCGTGCGGGCGCGGCGTTCCGGGGTCTGAACCCAGCGGCAGCCCAGCGAACCGCCTTTAAGAAATACGCCCCTGCGGATA‑CCGGGGCcatcat > 2:110481/1‑138 (MQ=255)
gCTTACAGCCTTCCAGACAGAGTCGTGGGGGATACATCACCTCCTGCCGGCGGGCGCGGCTTTCCGGGTGCTGACACCAGCGGCAGCCCACCGAACCCCCCTTTAGAAATACGCCCCGGCGGAAA‑GCGGGGGcatcag > 2:350535/1‑137 (MQ=255)
gCTTACAGCCTTCCAGACAGAGTCGTGGGGGATACAGCAGATCCTGGGTGCGGGCGCGGCTTTCCGGGGTGGGCACCCCGCGGCAGCCCAGCGGACCGCCATTAAGTAAAACGACCGGGCGGATA‑ACGGGGCgatctg > 2:803529/1‑136 (MQ=255)
cTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATA‑CCGGGGCCATCATggg < 5:160289/140‑1 (MQ=255)
ttACAGCCTTCCAGACAGAGTCGTGGGTGATACAGCAGATCCTGCGTGCGGGCGCGGCGTTGCGGGTTGGGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATAAGACCGTGCGGATA‑CCGGGGCCATAATgg > 2:437763/1‑138 (MQ=255)
aCAGCCTTCCAGACAGAGTCGTGGGGCATACAGCAGATCCTGCGGGCGGGCGCGGCTTTCCGGGGTGTGACACCAGCGGCAGCCCACCGAACCTCCATTAAGAAATAAGACAGATCGGATA‑CCGGGGGCATAATGGGTCg > 6:2551/1‑140 (MQ=255)
cAGCATTCCAGACAGAGTCGTGGGTCATACAGCTGATCCTGCGTGCGGGCGCGGCTTTCCGGTTTCTGACACCAGCTGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATA‑CCGGGGCCATCATGGGTCGa < 7:926160/140‑1 (MQ=255)
aGCCTTCCAGACCGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATA‑CCGGGGCCATCATGGGTCg < 1:888296/138‑1 (MQ=255)
gCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATA‑CCGGGGCCATCATGGGTCGa < 1:328523/138‑1 (MQ=255)
tCCAGACAGAGTCGTGGGTCATACAGCAGATACTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGCACAGCCGTTAAGAAATACGAACGTGCGGATA‑CCCGGGCCATCATGGGTCGAGTAGCg > 8:503873/1‑140 (MQ=255)
tCCAGACAGAGTCGTGGGTAATACACCAGCTACTGCGTGCGGGCGCGGCTTTGCGGGTTCTTAAACCAGCAGCCGCCCACCGAACAGCCATTAAGAAATACGACCCTGTCGCTA‑CCGGGGCCATCATGGGTCGAGGAGCg > 8:503383/1‑140 (MQ=255)
tCCAGACAGAGTCGTGGGGCCTACAGCAGATCCTGAGTGCGGGCGCGGCTTTGCGGGGTATGAAACCAGCGGCCGCCCAGCGCACAACCGTTAAATAAAACGACCCTTCGGATA‑ACGGGTGCATCATTGGGCGATTATCg > 6:795781/1‑140 (MQ=255)
tCCAGACAGAGTCGTGGGGCATACATCAGCTCCTTGGTGCGGGGGCGGCTTTCACGGGTATGACACCCGCGGCCGCCCAGCGAACAGCCATTAAGAAAAACGACCGTGCGGCTA‑CCGGGGCCATCAAGGGTCGGGGAGCg > 6:740105/1‑140 (MQ=255)
tCCAGACAGAGTCGTGGGGCATACAGCAGATCCTGCGAGCGGGCGCGGCTTTACGGGTTGTGAAACCAGCAGCCGCCCAGCGCGCCGACGTTAAGAAAAAACCACGGGCCGGTA‑CCGCGGCCATCAAGGGTGGACTatcc > 6:64213/1‑137 (MQ=255)
tCCAGACAGAGTCGTGGGGCATACAACAGAACCAGCGTGCGGGCCCGGCATTCCGGGTTAGGACCCCCGCCGCAGCCCACCGCACAGCCAGTAAAAAAAACGCACGGGGGGGTA‑ACGGGGGCATCAAGGGTCGAGGAGcc > 6:410215/1‑139 (MQ=255)
cagaccgaGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATA‑CCGGGGCCATCATGGGTCGAGTAGCg < 2:505661/138‑1 (MQ=255)
cagacagaGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACg < 1:887940/100‑1 (MQ=255)
cagacagaGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGGTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATA‑CCGGGGCCATCATGGGTCGAGTAGCGtt < 3:481947/140‑1 (MQ=255)
cagacagaGTCGTGGGGCAAACCGCAGATACTGCGTGCGGGCGCGGGTTTCCGGGTTCTGACCCCAGCGGCCGCCCCGCGCACCGCCTTTAAGAAATACGACCCGGCGGGTA‑CCGGGGCCATCATGGGGCGAggcggg > 2:788016/1‑133 (MQ=255)
gacagaGGCGTGGGTCATCCAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATA‑CCGGGGCCATCATGGGTCGAGTAGCGTTGa < 8:164143/140‑1 (MQ=255)
cgTCGTGGGGCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCTGCAGCCCAGCGAACAGCCTTTAAGAAATACTACCGTGCGGATA‑CCGGGGCCATCATGGGGCGAGTAGCGTTGAATAtt < 4:1013914/139‑1 (MQ=255)
agTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCGTTGCGGGTTCTGCCCCCCGCGGCCGCCCCGCGACCAGCCGTTAATAAATACGACCGGGCGGGTA‑CCGGGGCCATCAAGGGGCGAGTAGAGGTTAATAtt > 8:111050/1‑140 (MQ=255)
tCGTGGGTGATAAAGCAGATGCTGCGTGCGGGCGCGGCTTTCCGGGGTCTGACACCACCGGCAGCCCCCCCCACACCCATTTAGAAATACGACCGTGCGGAGT‑CCGGGGCCATCAAGGGTCGCGGAGCGGTGGATAtt > 2:427435/1‑138 (MQ=255)
tCGTGGGTCATACAGCAGATACTGCGTGCGGGCGCGGCGTTGCGGGTTATGACACCAGCGGCAGCCCCGCGAACAGCCATTTAGAAATACCACCCTGCGGTTA‑CCGCGGGCCTCATGGGTCGAGTATCGGTGAATAtt > 2:580673/1‑138 (MQ=255)
tCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAATAAATACGACCGTGCGGATA‑CCGGGGCCATCATTGGTCGAGTAGCGTTGAATATTGAAAATCAt < 7:1001750/140‑1 (MQ=255)
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GGCAGCAGTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATA‑CCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAATCAT > NZ_CP022686/4368204‑4368480
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
