Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F35 I0 R1
|
304 |
9232.4 |
10623078 |
98.3% |
10442485 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,368,341 |
T→G |
13.3% |
D47A (GAC→GCC) |
ybiY ← |
glycyl‑radical enzyme activating protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,368,341 | 0 | T | G | 13.3%
| 212.4
/ 8.8
| 144 | D47A (GAC→GCC) | ybiY | glycyl‑radical enzyme activating protein |
| Reads supporting (aligned to +/- strand): ref base T (54/68); new base G (17/5); total (71/73) |
| Fisher's exact test for biased strand distribution p-value = 5.18e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 148 total aligned reads displayed.
GGCAGCAGTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAA > NZ_CP022686/4368204‑4368476
|
ggCAGCAGTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCACCGCGCGCTCATTCACTTCCGGTGCGCTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGtaa > 7:508444/1‑138 (MQ=255)
ggCAGCAGTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCACTCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGtga > 8:648414/1‑138 (MQ=255)
ggCAGCAGTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCa > 5:153994/1‑140 (MQ=255)
ggCAGCAGTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCa < 2:1298929/140‑1 (MQ=255)
ggCAGCAGGCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGGCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCa < 2:337046/140‑1 (MQ=255)
gcagcaGTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTc < 4:290791/138‑1 (MQ=255)
gaagcagGCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCAt < 2:1337090/138‑1 (MQ=255)
cagcagTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACCGCTTCCAGCCTTCCAGACAGAGTCGTGGGTCATa > 8:837994/1‑140 (MQ=255)
cagcagTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACCGCCTTCCAGACAGAGTCGTGGGTGATa > 6:991949/1‑140 (MQ=255)
cgcagTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAc < 8:953766/139‑1 (MQ=255)
agcagTCGGTTAGCGCCGTAAAATGCTCCGGTGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAc < 5:347254/140‑1 (MQ=255)
agcagTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAc < 8:238445/140‑1 (MQ=255)
cattCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCACACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACTGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAcag < 7:123120/137‑1 (MQ=255)
gTCGGTTAGCGCCGTAAAATGCTCTGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAcagcc > 7:478752/1‑139 (MQ=255)
ggtAGCGCCGTAAAATGCTCCGGGGGTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAAGCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGGGGGTCATACAGCAGATc < 8:1188717/138‑1 (MQ=255)
tAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGGCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCt < 5:524087/140‑1 (MQ=255)
gcgcCGTAAAATGCTCCGGGGTAAACTATACCAGATGAATAAGCAAACAATACAACGCGCTGTCAATCACATCCGGTGCGGTCTAAGAGACCATCGTAAACCGTTCCAGACCGAGACGTCGGGCATAGAGAAGAtaaagg > 8:778297/1‑135 (MQ=255)
cgcCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTGATACACCAGCTCCtgcg > 7:765416/1‑140 (MQ=255)
aaagcgccGGGGTTAACTTTTCCCGATGAATAAGAACACCATTCAACGCGGGCTGAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACTGCCTTCCAGACAGAGTCTTGGGTCATACAGCAGATCCTGCGTGCGGgcg < 1:1078654/134‑1 (MQ=255)
aTGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGAAAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGgcgc < 1:328828/140‑1 (MQ=255)
tCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTGATACAGCACAACCTGCGTGCGGGCGCGGCt > 5:413198/1‑140 (MQ=255)
tCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCATGCGTGCGGGCGCGGcg > 2:896354/1‑139 (MQ=255)
ggggTAAACTTTTCCCGATGAATAAGCAAACCCTTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCtt < 3:550752/138‑1 (MQ=255)
gggTTAACTTATCCCGATGAATAAGCACACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTATTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTcc < 5:959798/140‑1 (MQ=255)
cTTTTCCCGATGAATAAGCATACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTTCAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGGTCt < 2:572684/140‑1 (MQ=255)
cTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGGGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGtt < 4:1001033/138‑1 (MQ=255)
tCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGCATACAGCAGCTCCTGCGTGCGGGCGCGGCGTTCCGGGTTcggccc > 2:646057/1‑135 (MQ=255)
tCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGCATACACCAGATCACGCGTGCGGGCGCAGCGGTACGCGTTCTGacc > 2:1121820/1‑139 (MQ=255)
taaTAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGc < 3:680575/137‑1 (MQ=255)
aGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGcc < 5:607975/140‑1 (MQ=255)
aaCCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCATAAACTGCGGGCGGGCGCGGCGTTCCGGGTTCGGCCCCCCGCGGGAGCCCAGc > 5:827463/1‑140 (MQ=255)
ccATTCAACGCGCGCTCAATCACTTCCGTTGCTGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCCTCTCCAGCGTTCGGGGGCGGCTTTCAGGGTGCATCCACCAGCGGCAGCCCcgcgc > 8:941980/1‑139 (MQ=255)
ccATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTAATACAGCATATACTGCGTGCGGGCCCGGCTTTCCCGGTTCTGCAACCAGCGGCAGCCCacccc > 2:972911/1‑136 (MQ=255)
ccATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCAAGACAGAGTCGTGGGGCATACAGCAGATACTGCGGGCGGGCGCCGCGTTCCGGGTTCAGACACCAGCGGCAGCCCAGCgc > 6:945756/1‑139 (MQ=255)
cATTCACCGCTCGCTCCATCACTTCCGGTGCGGTCTTAGCTCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGCATCCAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGaa < 5:1217874/140‑1 (MQ=255)
cATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTATCGCACAGCTTACAGCCTTCCAGACACAGGCGCGGGGCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGaa < 8:805318/140‑1 (MQ=255)
cATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGCGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGaa < 6:940075/140‑1 (MQ=255)
cATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGaa < 2:450536/140‑1 (MQ=255)
cATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGaa < 5:766824/140‑1 (MQ=255)
cATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGaa < 7:895696/140‑1 (MQ=255)
aTTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTGATACATCAGAATCAGCGGTCGGGCGCGGCGTTACCGGTTCTGAAACCACCGGCAGCCCAGCGAAc > 1:185585/1‑140 (MQ=255)
aTTCAACGCGCGCTCAATCACTTCCGGTGCGGGCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGa < 3:1251740/138‑1 (MQ=255)
aaCGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGcc < 5:1025898/140‑1 (MQ=255)
cgcgcTCACTAACTTCCGGTGCTGTCTTAGCTCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACATCAGATCCTGCGTGCGGGCGCGTCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCtt < 4:1051783/138‑1 (MQ=255)
cgcgcTCAATCCCTTCCGGGGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTa < 6:1237771/140‑1 (MQ=255)
cgcgcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGGCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTa < 7:549653/140‑1 (MQ=255)
cgcgcTCAATCACTTCCGGTGCGGGCTTAGCGCTCAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTa < 6:148077/140‑1 (MQ=255)
cgcgagaaaTCAGTTCAGGGGCGGTCTTAGCGCACAGCTTAAAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTa < 6:342791/133‑1 (MQ=255)
gcgcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAAAGCAGAGCCGTCGTGCGGGCGCGGCTTTGAGGGGTGTGACACCACCGGCAGCCCCCCGCACCGCCGTTaa > 1:752385/1‑140 (MQ=255)
gcgcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTATGACACCAGCCGCCTCCCAGCGAAAACCCtatta > 6:1086580/1‑136 (MQ=255)
cgcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAg < 8:448767/140‑1 (MQ=255)
gcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATTCACCACATACGGCCTGCGGGCGCGGCTTTACGGGTTGTGACACCAGCGGCAGCCCCGCCAACAGCCGTTaa > 4:371580/1‑138 (MQ=255)
gcTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGAAAGAGTCGTGGGTCATACACCAGATCCTGCGTGCGGGCGCAGCGTTAAGGGTTCAGACACCAGCCGCAGCCCAGCGCACAGCCGTTaata > 8:163613/1‑138 (MQ=255)
aagaaCTTCCGGTGCGGTCTTAGCGCAAAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCTGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGaaa < 3:851722/134‑1 (MQ=255)
aaTCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGGCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATa < 6:994767/140‑1 (MQ=255)
cACTTCCGGGGCGGTCTTAGCGCACTGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCATTTAAGAAATACGa < 8:700790/140‑1 (MQ=255)
ttCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTGATACACCACATCCTGCCTGCGGGCGCGGGTTTACGGGGTGTGACCCCAGCCGCCGCCCCGCGCACAGCCATTAATaaaaaacac > 3:1138939/1‑132 (MQ=255)
ttCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATACAGCGTGCGGGCGCGGGGTTCCGGGTTATGAACCCAGCGGCAGCCCCCCGCACAGCCCTTTAGAAATAAGACCg > 8:1074322/1‑140 (MQ=255)
cGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGt < 4:859477/138‑1 (MQ=255)
ggTGCTGTCTTAGCTCACAGCTTACAGCCTTCCAGACTGAGTCGTGTGTCATACAGCAGATCCTGCTTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTg < 3:1017805/138‑1 (MQ=255)
tGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAAAGCAGCTCCTGCGTGCGGGGGCGGCTTTCAGGGGTATGTCCCCAGAGGGAGCCCAGCGAACAGCCGTTAAGAAATAAGAACGTGCggt > 6:383106/1‑139 (MQ=255)
gTCTTATCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAAAACAGATCCAGCGGGCGGGCGCGGCGTTGCGGGTTGTGACACCAGAGGGATCCCAGCGCACAGCCTTTAAGAAATACTACCGTGCGGaacac > 6:92177/1‑136 (MQ=255)
gTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTGATAAAGCAGCTCCTGCGTGCGGGCGCGGGGTTCCGGGGTCTGACCCCAGCGGCCGCCCCGCGCCACGCCGTTAAGAAATACGACCGGGCGGagaac > 8:466656/1‑136 (MQ=255)
tAGCGCACAGCTTACAGCCTTCCAGACCGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCgggg < 7:1074322/140‑1 (MQ=255)
tAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCGGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCgg < 3:1340856/138‑1 (MQ=255)
tAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCgggg < 1:255878/140‑1 (MQ=255)
tAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCgg < 4:422788/138‑1 (MQ=255)
tAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCgg < 4:146545/138‑1 (MQ=255)
caGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCCGGACCGGCGTGCGGGCGCGGCTTTGCGGGGTGTGCCACCCGCGGCAGCCCAGCGAACCGCCTTTAAGAAATACGACCGTGCGGCTACCCGGGCcctcat > 8:1182512/1‑140 (MQ=255)
caGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCGTTCCGGGTTCTGACACCAGCGGCAGCCCCGCGAGCAGCCTTTAAGAAATAACCCCGTGCGGCTACCGGGGGcaagaa > 1:1318017/1‑136 (MQ=255)
caGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATAAAGCAGATCCAGAGGGCGGGCGCGGCGTTCCCGGTTATGACACCAGCGGCAGCCCAGCGCACAGCCATTAATAAATAAGACCGTGGGGAGAACGGGGCcaagag > 8:772138/1‑136 (MQ=255)
gCTTACAGCCTTCCAGACAGAGTCGTGGGTGATACAGCAGATCCTGCGTGCGGGCGCCGCTTTCCCGGTAATGACACCAGCGGCAGCCCAGCGAACACCCATTAAGAAATACGACCGTGCGGCTTCCCGGGCCATCAAgg > 2:1368238/1‑140 (MQ=255)
gCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGGGCGGGCGCGGCGTTCCGGGGTCTGCCACCCGCGGCAGCCCACCGCACAGCCGTTAAGAAATACGGCCGTGCGGATAACGGGGCcatcag > 4:533418/1‑137 (MQ=255)
gCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATACTGCGTGCGGGCGGGGCGTTCCGGGGTGTGCCCCCAGCGGCGGCCCAGCGCACAGCCTTTAAGAAATAAGACCGGGCGGGTAACCGGGCCCGCATgg > 2:289659/1‑140 (MQ=255)
gCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATAATGCCTGCGGGCGCGGCATTACGGGTTGTGCCACCAGCGGCAGCCCAACGAACCGCCGTTAAGAAATACGACCGTGGGGATAACGGGGccctaaa > 4:989720/1‑133 (MQ=255)
cTTACATCCTACCCGACAGATTCGTGGTTCATACAGCAGATCCTGCGTGCGGTAGCGGCTTTCAGGGTTCTGACACCAGTGGCAGACCATCGAACAGCCTTTAAGAAATACGAACGTGCGGATAGCGGGGCCATCATggg < 8:781147/140‑1 (MQ=255)
cTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCTAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATggg < 1:964562/140‑1 (MQ=255)
tACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATggg < 4:810025/138‑1 (MQ=255)
aGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACTGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAg < 8:590153/140‑1 (MQ=255)
aGCCTTCCAGACACAGGCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGTGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAg < 5:985497/140‑1 (MQ=255)
aGCATTCCAGACAGAGTAGTGGGTCTTACCGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGTGTCGGACACCTGCGGCAGCCCAGCGAACCGCTTTTAATAAATACGACCGTGAGGATACCGTGGCCATCATGGGTCGAg < 5:1240795/140‑1 (MQ=255)
tCCATACAGAGTCGTGGGTCATACAGAAGATACAGCCTGAGCGCGCGGCGTTACGGGATAAGACAACACCGGCACCCCACCGCACCGCCTTTTAGAAATAAGAACCTGCGTGAACACGGGCCATCAAGGGTCGactttac > 2:959322/1‑134 (MQ=255)
tCCAGACAGAGTCGTGGGTGCTACAGCAGATCCTGCGGGCGGGCGCGGCGTTCCGGGGTGTGACCCCACCCGCCGCCCCGCCCACCACCCTTAAGAAAAACCACCCGGCGGGTACCCGGGGCCTCAATGGTCGAGGAGCg > 2:670831/1‑140 (MQ=255)
tCCAGACAGAGTCGTGGGTGATACAGCAGATCCTGCGTGCGGGCGCGGCTTTACGGGTTGTGACCCCAGCGGGAGCCCCCCGCACAGGCTTTAAGAAATACGGCCGTGCGGGAACCGGGGCCCTCATGGGTCGCGTATCg > 8:357781/1‑140 (MQ=255)
tCCAGACAGAGTCGTGGGTGATACAGCAGATCCGGCGTGCGGGCGCGGCTTTCCCGGTTCTGGCACCCGCGGCAGCCCAGCGCACAGCCGTTAAGAAATACGCCCGTGCGGATAACGGGGCCAACAAGGGGCGAGTAggg > 6:836598/1‑138 (MQ=255)
tCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCGGACCCCAGCGGCCGCCCAGCGCACAGCCGTTAAGAAATACGACCGTGCGGTTACCCGGGCCATAATGGGGCGGGTTGCg > 2:812204/1‑140 (MQ=255)
tCCAGACAGAGTCGTGGGTCATACAGCAGATCCGGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCCGCCCCGCGAACCGCCATTAATAAATACGACCGGGCGGATACCCGGGGCAACAAGGGTCGAGTAGCg > 8:457813/1‑140 (MQ=255)
tCCAGACAGAGTCGTGGGTCATACAGCAGATACTGCGTGCGGGCGCGGCTTTCCGGGGTATGACACCACCGGCAGCCCAGCGCCCCGCCGTTTAGAAAAAAGAACCGGCGGCTAACGGGGCCCTCATGGGGCGAggatcg > 2:433520/1‑135 (MQ=255)
tCCAGACAGAGTCGTGGGGCATACAGCAGCTGCTGCGGGCGGGCGCGGCGTTGCGGGTTGTGACACCCGCGGCGACCCAGCGCACCGCCGTTAAGAAATACGGCCGGGGGGAGACCGGGGCCATCATGGGTGGAggtgcg > 6:804336/1‑135 (MQ=255)
tCCAGACAGAGTCGTGGGGCATACACCAGCTCCTGCGTGCGGGCGCGGCGTTACGGGGTGTGACACCATCGGCCCCCCCGCGAACAGCCTGTAAGCAATAAGACCCTGCGGCAACCGGGGCCCACATGGGTCGAgaggcg > 6:874865/1‑135 (MQ=255)
tCCAGACAGAGTCGTGGGGAATTCAGCAGCACCTGCGTGCGGGCGCGGCGTTACGGGGTCAGACACCAGCGGCAGCCCCGCGAACAGCCGTTAATAAAAACGAACCGGCGGATACCGGGGCCCTCCTGGGTCGCGTAGCg > 6:1080984/1‑140 (MQ=255)
cagacagaGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCGTTGCGGGGTGTGACACCAGCGGCCGCCCAGCGAACAGCCATTAATAAATACGACCCTGCGGGTACCCGGGCCATCATGGGGGGAGGAGCg > 4:199219/1‑138 (MQ=255)
cagacagaGTCGTGGGTCATAAAGCCGATACTGCGTGCGGGCGCGGCTTTCCGGGTTCTGGCACCAGCGGCCGCCCCGCGAACAGCCGTTAAGAAATACGACCCTGCGGATACCGGGGCCAACAAGGGTCGAGGAGCg > 4:1176883/1‑138 (MQ=255)
cagacagaGTCGTGGGGCATACACCAGATCCTGCGTGCGGGCGCGGCTTTGCGGGTTGTGCCACCCACGGCAGCCCCGCGCACACCCGTTTAGAAATACGACCGTGCGGATACCGGGGGCCTCATGGGTGGACTAGCg > 4:658731/1‑138 (MQ=255)
cgagTCGTGGGGCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGaa < 3:497039/137‑1 (MQ=255)
agagTCGTGGGTCATACAACAGAAACTGCGTGCGGGCGCGGCTTTACGGGTTGTGACAACCTCGGCACCCCAGCGAACAGCCGATAAGAAATAATACCGTGCGGATAACTGGGCCCTAATGGGGCGAGTTGCGTTTaaat > 2:71146/1‑138 (MQ=255)
agTCGTGGGTGATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGGTCTGACACCAGCGGCCGCCCAGCGCACAGCCGTTAAGAAATAAGACCGTGGGGGTACCGGGGCCAACATGGGTCGAGTATCGGTGAATAtt > 2:1229734/1‑140 (MQ=255)
agTCGTGGGTGATACAGCAGATCCTGCGTGCCGGCGCGGCGTTACGGGTTCTGACACCAGCGGCAGCCCAGCGCACAGCCATTAAGAAAAACGACCGGTCGGATACCGGGGCCATAATGGGTGGAGTAGCGTTGGATAtt > 8:1113153/1‑140 (MQ=255)
agTCGTGGGTCATACAGCAGATACTGCGTGCGGGCGCGGCTTTCCGGGGTCTTCCACCAGCGGCAGCCCCGCGAAAAGCCTTTAAGAAATAAGACCGTGCGGTTAACGGGGGCATCATGGGTAGAGTAGCGGTGAATAtt > 2:1095144/1‑140 (MQ=255)
gTCGTGGGTGATAATGAAGATCGTGAGTGCGGGCGCGGCTTTCAGGGTTCTGACACCAGCGTCCGCCCTGCGAACAGCCTTTAATAAATTCGACCGTGCGGATACCGGGGCCATCATGGGTCGTGTAGCGTTGAatat < 3:355655/138‑1 (MQ=255)
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GGCAGCAGTCGGTTAGCGCCGTAAAATGCTCCGGGGTTAACTTTTCCCGATGAATAAGCAAACCATTCAACGCGCGCTCAATCACTTCCGGTGCGGTCTTAGCGCACAGCTTACAGCCTTCCAGACAGAGTCGTGGGTCATACAGCAGATCCTGCGTGCGGGCGCGGCTTTCCGGGTTCTGACACCAGCGGCAGCCCAGCGAACAGCCTTTAAGAAATACGACCGTGCGGATACCGGGGCCATCATGGGTCGAGTAGCGTTGAATATTGAAAA > NZ_CP022686/4368204‑4368476
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
