Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F13 I0 R1
|
230 |
5035.0 |
9125430 |
98.4% |
8979423 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,390,605 |
T→G |
15.1% |
K146N (AAA→AAC) |
sgcX ← |
M42 family metallopeptidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,390,605 | 0 | T | G | 15.1%
| 454.1
/ 18.0
| 297 | K146N (AAA→AAC) | sgcX | M42 family metallopeptidase |
| Reads supporting (aligned to +/- strand): ref base T (117/120); new base G (51/2); total (175/122) |
| Fisher's exact test for biased strand distribution p-value = 8.37e-12 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 325 total aligned reads displayed.
CCGCTACACCGAGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑ACACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGA > NZ_CP022686/3390466‑3390741
|
acCGAGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCgtggttgtg > 8:625964/1‑137 (MQ=255)
cGAGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGtctttgtctttg < 2:152331/140‑1 (MQ=255)
aGCAGGGCAGTACAGCCCAGACGATCGTCTATTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGc > 1:933556/1‑140 (MQ=255)
aGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGCCCTGAATGCCCATTCGTATAGCGTAGtctttgtatttgtg > 5:57148/1‑138 (MQ=255)
aGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTTTCTTTGGc > 2:795722/1‑140 (MQ=255)
aGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTGTTTGGc > 4:1124796/1‑140 (MQ=255)
cAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTTTACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTTTGTTTggg > 7:563227/1‑137 (MQ=255)
cAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGc > 7:781740/1‑138 (MQ=255)
cAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGc < 7:41185/138‑1 (MQ=255)
cAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTGTTTCTTTGGc > 7:92473/1‑138 (MQ=255)
cAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTTTATTTGGc > 8:1082018/1‑138 (MQ=255)
ggCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCGAGGAGTTGAGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCTTCGTCTTTGTCTTTGGCACCaa < 5:502071/140‑1 (MQ=255)
cAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCaa < 7:1018926/138‑1 (MQ=255)
aGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTGTTTGGGCCCaaa > 8:1029851/1‑137 (MQ=255)
tACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTGTCTTTGGCCCCAATATCa > 2:352214/1‑140 (MQ=255)
tACAGCCCAGACGATCGTCTAGTGCTTTACTGCACAACAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACGGAGTGACAGGCGTACCGACCTGAATGCCCATTCTTATAGCGTCGTGATTTTGTTTGGCCCCCAAATCa > 4:1076796/1‑140 (MQ=255)
cccAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATATCGTCGTCGTTGTGTTTGGCCCCAAAATCAAtgcc > 5:369271/1‑137 (MQ=255)
cccAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCca > 6:916262/1‑140 (MQ=255)
cccAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCAACAATATCAAACca > 2:625897/1‑140 (MQ=255)
cccAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTATTTGGCACCAATATCAATCca > 6:1096187/1‑140 (MQ=255)
cccAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGGGTTTGGGACCCATATCaaaacc > 6:245505/1‑136 (MQ=255)
accAGACGATCGTCTAGTGCTTTACTGCACACCAGATCTTTTGCCAGGAGTTGCGTCTGGTTATACATATTGAAAGTCGTAACGAAATGAATGAACATTCGTATATAGTCTTCTTTTTGTTTTTCACAAATATATATCca > 6:444638/2‑140 (MQ=255)
cAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGTGTCGTCTTTTTCTTTGGGCCCCATATCAAACca > 7:785707/1‑138 (MQ=255)
cAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGGTTTGATGTGGGCCCAATATCAAtacc > 8:76826/1‑135 (MQ=255)
cAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGGCTTTGTCTTTGGCACCAAAATCaaaacc > 8:565019/1‑134 (MQ=255)
cAGACGATCGTCTAGTGCTTTACTGAAAAACAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGAGTCGTCTTTGTGTTTGGGACCAAAATAAATAcaca > 2:105979/1‑140 (MQ=255)
gACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCcaca < 7:387032/138‑1 (MQ=255)
aCGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATTCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCAACAATATAAATcaaaagat > 6:655038/1‑133 (MQ=255)
aCGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCCTTCGTATAGCGTCGTCGTTGTGGTTGGCGCCAAAAAAAATCcccacgt > 2:466648/1‑137 (MQ=255)
aCGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTGTCTTTGGGACCAATATAAATCCACACtt > 5:315405/1‑140 (MQ=255)
cGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGTTTGTCTGTTGGACCAATATAAATCCACAGTTTGTCg > 3:259372/1‑140 (MQ=255)
cGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGGCGTCGTTGTCTTTTGCACCAATATCAATACACAGTTTGTCg > 4:185421/1‑140 (MQ=255)
gTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTc < 7:672004/138‑1 (MQ=255)
gTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGa < 1:130176/140‑1 (MQ=255)
tGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTGTATTTGGCACCAATATAAATACACAGTTTGTCGACAGAAg > 4:965693/1‑140 (MQ=255)
cTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGTGTGTCGTTGGGACCAATATAAATACACACTTTTTGGACAGAAGGt > 1:490173/1‑140 (MQ=255)
ttACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCAATCGTATAGCGTCGTCGTTGTGTTTGGGACCAAAATCAATCCACAGTTTGTGGACAGAAGGTgt > 5:693477/1‑139 (MQ=255)
ttACTGCACACCAGATCGTTTGCCAGGAGGGGCGGCGGGGTATACAGAGTGCCAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGa < 6:669694/140‑1 (MQ=255)
tACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTGTTTGGCACCAATATAAAACCACAGTTTGTCGACAGAAGGTGAc > 1:410184/1‑140 (MQ=255)
ccAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGTTTTTCGTTGGCCCCAATATAAATACACCTTTTGTGGACAGAAGGTGTCagcgtgc > 7:141214/1‑138 (MQ=255)
gATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCt < 7:766040/138‑1 (MQ=255)
gATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAAAATAAATCCACAGTTTGTCGACAGAAGGTGACTGCGTgcgcg > 8:16292/1‑137 (MQ=255)
tttGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTTTCTTTGGCACCAATATAAATACACACTTTGTGCACATAAGGTGACTTCCTGGGCTCGTCGcc > 1:546763/1‑140 (MQ=255)
tttGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGGCGTCGTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGcc < 5:94240/140‑1 (MQ=255)
ggAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCa < 5:1002181/140‑1 (MQ=255)
gTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGGTTTTGTTTTGGACCAATATAAAAACACACTTTGTAGACAGAATGTGACTGCGTGCGCTCGTCGCC‑ATTGGCaaaa > 1:105173/1‑139 (MQ=255)
ggcggGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGGGCTAGTCGCC‑TTTGGCAAAGTGGTa < 6:122053/140‑1 (MQ=255)
ggcggGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTgg < 7:247572/138‑1 (MQ=255)
ggcggGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTa < 1:1130979/140‑1 (MQ=255)
ggcggGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTa < 1:521562/140‑1 (MQ=255)
ggcggGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTa < 3:408348/140‑1 (MQ=255)
ggcggGTTATACAGAGTGACAGGCGTACCGACCTGAAGTCCCATTCGTATATCGTCGTCGTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTa < 4:593318/140‑1 (MQ=255)
ggTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGTTTGTCTTTGGCACCAATATCAATACCCAGTTTGTAGACAGAAGGTGACTGAGTGCGCTAGTCGCC‑TTTTGCAAAGTGGTAGGAc > 4:441626/1‑140 (MQ=255)
ggTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTATTTGGCACCAATATCAATCCACAGTTTTTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAATTGGTAGGaa > 3:537678/1‑139 (MQ=255)
agTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGTTTGTGTTTTGCACCAATATAAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGa > 1:272887/1‑140 (MQ=255)
agTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTGTTTTGGACCAATATCAATCCACAGTTTTTCGACAGAAGGTTACTGCGTGCGCTCGTCGCC‑ATTGGCAAAGTGGTAGGTCGTAATTCCGa > 2:218783/1‑140 (MQ=255)
agTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTTGCACCAATATCAATCCACAGTTTTTCGACAGAAGGTGACAGCGTGCGCGAGTCGCC‑GTTGGCAAAGTGGTAGGAAGTAATGCCgc > 5:140039/1‑139 (MQ=255)
agTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGa < 3:200369/140‑1 (MQ=255)
agTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTGTGTTTTGCTCCAATAACAATCCACAGTTTGTCGACAGAAGGTGAATGCGTGCGCTCGTAGGC‑GTTGGGAAAGTGGTATGAATTAATGGCgg > 4:919583/1‑139 (MQ=255)
agTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTGTCTTTGGGCCCAATATCAATCCACAGTTTGTCGCCAGAAGGTGTCTGCGTGCGCTCGTCGCC‑TTTGGGAAAGTGGTTGGACTTAATGCCgc > 3:1150013/1‑139 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGACGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑a < 6:777310/140‑1 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGa < 8:314286/138‑1 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGa < 7:625964/138‑1 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑a < 1:671045/140‑1 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑a < 5:643603/140‑1 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑a < 3:770947/140‑1 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑a < 3:901760/140‑1 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑a < 3:835099/140‑1 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑a < 2:27189/140‑1 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTGTGTTTGGCCCCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTAGTCGCC‑TTTGGCAAAGTGGTATGACTAAATGCCGaaa > 4:397016/1‑138 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTGTCATTGGCACCAATATAAATACCCAGTTTGTCGACAGAAGGTGTATGCGTGCGCTAGTGGCC‑ATTGGCAAAATGGTAGGACTTTATGACGa > 8:1010193/1‑138 (MQ=255)
ggACAGGCGTACCGACCTGAATGCCCATTCGTATATCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCTACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑a < 6:41835/139‑1 (MQ=255)
ggACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑a < 5:913303/139‑1 (MQ=255)
gACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGTTTGTGTTTGGCACCAATATAAATGCCCCGTTTGTCGGCAGAAGGTGCCTGCGTGCGCGCGTCGCC‑TTTGGCAAAGTGGTAGGCCTTAATGGCggg > 7:823913/1‑136 (MQ=255)
aCAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGa < 7:109014/136‑1 (MQ=255)
cAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑acac < 6:567538/140‑1 (MQ=255)
cAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGGAGGAATTAATGCCGAT‑aaac > 1:839891/1‑140 (MQ=255)
aCCGACCTGAATGCCCATTCGTATAGCGTCTTCTTTTTATTTTGCCACAATATAAATACACAGTTTTTCGACAGAAGGTGTCGTCGTTCGCTCGTCGGC‑ATTTGCAAAGTTGTAGGCAATAATGACGAT‑ACACCCCAAGa > 5:73024/1‑140 (MQ=255)
aCCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGGACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCATCGCA‑GTTGGCTAAGTGGTAGGACTTAAAGCCGATAACACCCAAta > 4:856902/1‑139 (MQ=255)
aCCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCCCCAATATAAATACACAGTTTGTGGACAAAATGTGACTGCGTGCGCGCGTCGCCGTTTGGC‑AATTGGTTGGACGTTATTCCGCA‑TCACCCCAAGa > 3:99640/1‑140 (MQ=255)
gACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑ACACCCCATGACTg < 3:702436/140‑1 (MQ=255)
gACCTGAATGCCCATTCGTATAGCGGCGTCTTTGTCTTAGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑ACACCCCATGACTg < 1:749045/140‑1 (MQ=255)
aCCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑ACACCCCATGACTgg < 4:369819/140‑1 (MQ=255)
gAATGCCCATTCGTATAGCGTCGTCTTTGTGTTTGGCAACAATATAAATCAACAGGTTTTCGCCAGAAAGTGACTGCGTGCGCGCGTCGCC‑GTTGGCAAAGTGGTAGGACGTATTGCCGAT‑ACCCCCCAAGAATgggc > 8:694060/1‑136 (MQ=255)
aaTGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑ACACCCCATGACTGGCCCtt < 2:1087532/140‑1 (MQ=255)
cccATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑ACACCCCATGACTGGCCCTTTg < 7:707886/138‑1 (MQ=255)
cccATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑ACACCCCATGACTGGCCCTTTGTc < 6:63069/140‑1 (MQ=255)
ggTATAGCGTGGTCTTTGGCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGAGCGCTCGTCGCC‑TTTGGCAAAGTGGGAGGACTTAATGCCGAT‑ACACCCCATGACTGGCCCTTTGTCCCCg < 8:786391/137‑1 (MQ=255)
cGTATAGCGTCGTGTTTGTCTTTGGGACCAATATGAATCCACAGTTTGTCGACAGAAGGTTACTGCGTGCGCTCGTCCCC‑TTTGGCAAAATTGTAGGACTTAATGACGAT‑ACACCCCATGACTGGCCCGTTGTGCCCggg > 4:543654/1‑139 (MQ=255)
cGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑ACACCCCATGACTGGCCCTTTGTCCCCGGt < 4:787766/140‑1 (MQ=255)
cGTATAGCGTCGTCTTTGGCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑ACACCCCATGACTGGCCCTTTGTCCCCGGt < 2:73116/140‑1 (MQ=255)
cGTATAGCGTCGTCTATGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑ACACCCCATGACTGGCCCTTTGTCCCCGGt < 3:466261/140‑1 (MQ=255)
gCGTCGTCTTTGTCTTTGGCACCAATATCAATCCCCAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑ACACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGt < 4:319414/140‑1 (MQ=255)
cgtcgtCTTTGTCGTTGGCACCAATATAAATACACAGTTTTTCGACACAAGGTGACTGCGTGCGCTCGGCGCC‑GTTGGCAAAGTGGTATGACGTAATGCCGAA‑ACACCCCAAGACTGGCCCATTGTTCCCGGTTAGGGTg > 2:880438/1‑140 (MQ=255)
tcgtgTTTGTCTTTGGCACCAATATAAATCCACAGTTTGTGGCGATAAGGTGCCTGCGGTCGCTAGTCGCC‑TTTTGCAAAGTGGTTGGACTTAATGACGAT‑GCACCCCATGACTGGCCCGTTGTCCACGGTGAggggg > 8:5235/1‑136 (MQ=255)
tcgtcTTTTTCTTTTGCACCAATATAAATACACAGTTTGTCGACAGAAGGTGACTGCGTTCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATTCCGAT‑ACACCCCATGACTGGCCCTTTTTCCCCGGTGAGGGTGAc > 2:947966/1‑140 (MQ=255)
tcgtcTTTGTCTTTTGCACCAAAAACAAACCACACTTTGTCGACAGAAGGTGACAGCGTGCGCTCGTCGCC‑GTTGGCAAATGGGTAGGACTTAATGCCGAT‑ACCCCCCAAGACATGCCCTTTGTACCCCGGGATGGttcc > 6:179995/1‑137 (MQ=255)
tcgtcTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑t > 4:744605/1‑72 (MQ=255)
gtctttgtctttGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑ACACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGa < 6:316480/140‑1 (MQ=255)
gtctttggctttGGCACAAATATCAATCCACTGTTTGTCGACAGAAGGGGTCTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑CCACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGa < 2:117166/140‑1 (MQ=255)
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CCGCTACACCGAGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCC‑TTTGGCAAAGTGGTAGGACTTAATGCCGAT‑ACACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGA > NZ_CP022686/3390466‑3390741
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
