Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F13 I0 R1
|
203 |
11425.2 |
8793538 |
98.4% |
8652841 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,390,605 |
T→G |
17.3% |
K146N (AAA→AAC) |
sgcX ← |
M42 family metallopeptidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,390,605 | 0 | T | G | 17.3%
| 359.7
/ 21.6
| 232 | K146N (AAA→AAC) | sgcX | M42 family metallopeptidase |
| Reads supporting (aligned to +/- strand): ref base T (89/94); new base G (44/2); total (135/97) |
| Fisher's exact test for biased strand distribution p-value = 3.50e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 245 total aligned reads displayed.
CCGCTACACCGAGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGAT > NZ_CP022686/3390466‑3390742
|
cTACACCGAGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGCCCTGAATGCCCATTCGTATAGCGTCgtgtttt > 1:850316/1‑139 (MQ=255)
cGAGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGGTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATATCGTCGtcgttgtctgtg > 6:430793/1‑140 (MQ=255)
aGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTTTCGTTggg > 2:227935/1‑139 (MQ=255)
aGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGc > 5:981883/1‑140 (MQ=255)
aGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGc > 6:170335/1‑140 (MQ=255)
aGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCAATTCGTATAGCGTCGTGGTTGTATTTggg > 8:896118/1‑139 (MQ=255)
cAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTTACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCgtctttgtgttttgg > 4:835053/1‑135 (MQ=255)
cAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCAc < 5:360767/140‑1 (MQ=255)
aGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCAcc < 1:786747/140‑1 (MQ=255)
aGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAatat < 1:186187/140‑1 (MQ=255)
tACAGCCCAGACGCTCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGGTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGGATCGCGTCGTCTTTGTATTTGGGACCAatataa > 2:899834/1‑138 (MQ=255)
tACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCGTTGGGACCAATATcc > 1:54126/1‑139 (MQ=255)
cAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCa > 3:218065/1‑138 (MQ=255)
cAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGAGTCGTCGTGGTGTTTTGCTCCAatataa > 4:334189/1‑136 (MQ=255)
cccAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGCGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGGTTGTCTTTGGGCCCCATATAAAtgcc > 8:459462/1‑137 (MQ=255)
cccAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGTTTGTCTTTTGCACCCAAATAAATAca > 6:553721/1‑140 (MQ=255)
cccAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTTTGGTTGGCCCCAATATCAAAccc > 1:768776/1‑139 (MQ=255)
cccAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGGTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGGTTGTCGTTGGGCCCAATATAAATCca > 8:352692/1‑140 (MQ=255)
cccAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGGTGGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCAGAATGCCCAATCGGATAGCGTCGGCTGTGTCTGTGGGCCCAATATCACTccc > 2:1050343/1‑139 (MQ=255)
ccAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATcc < 3:854143/138‑1 (MQ=255)
cAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTATTTGGCAGCAATATCAATccc > 4:973840/1‑137 (MQ=255)
cAGACGATCGTCTAGTGCTTTACTGCACACAAGATCGTTTACCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCAATCGAATAGCGTCGTCTTTATCTTTGTAACCAATATCAATCca > 3:426664/1‑138 (MQ=255)
gACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCcaca < 4:218065/138‑1 (MQ=255)
aCGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTGTCTTTTGCACCAATATCAATCcacacgt > 6:842983/1‑137 (MQ=255)
gATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTCCCGACCTGAATGCCCATTCGTATATCGTCGTGTTTTTCTTTTGCACCAAAATAAATCCACAGtt > 4:669251/1‑138 (MQ=255)
gATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGTTTGTCTTTGGGCCCAATATCAATCCACAGtt > 4:544187/1‑138 (MQ=255)
gATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCAGTCGTATAGAGTCGTCTTTGTATTTTGCACCAATAAAAAAACACAGtt > 4:404549/1‑138 (MQ=255)
aTCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGttt < 4:499442/138‑1 (MQ=255)
tCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTc < 7:900962/140‑1 (MQ=255)
cGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTGGTTTGCACCAATATCAAACCACACTTTGtag > 8:750485/1‑138 (MQ=255)
tCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTGGCGGCGGGGTTTACAGAGTGACAGGCGTACCGACCTGATTGACCATTCGTATAGGGGCGTGTTTGGCTTTGGCACCAATTTAAATGCAAATTTTGTCg > 3:597690/1‑138 (MQ=255)
cTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACa < 5:264351/140‑1 (MQ=255)
aGTGCTTTACTGCACTCCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGa < 1:101090/140‑1 (MQ=255)
aGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGGGTTTTGGGCCAAAATAAAAACCCAGTTTGTCGACaca > 5:596615/1‑138 (MQ=255)
tGCTTTACTGCACACCAGATCGTTTGCCAGGAGTAGCGGCGGGTTATAAAGAGAGACAGCCGTACCGACCTGAATGCCCAATCGTATAGCGTCGTCGTTGTATTAGGGACCCAAATAAATACACACTTTGTAGACAGaaa > 7:861/1‑139 (MQ=255)
cTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGt < 6:981883/140‑1 (MQ=255)
cTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGt < 5:1048808/140‑1 (MQ=255)
ttACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGa < 7:295395/140‑1 (MQ=255)
cTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTTTATTTTGCACCAAAATAACAGCACAATTTGGAGACAGAAAGttcc > 3:162826/1‑135 (MQ=255)
cTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTTGACCCAATATAAATCCACAGTTTGTCGACAGAAGGTTAc > 4:648757/1‑138 (MQ=255)
cacaCCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTTTGTTTGGGACCAATATCAATACCCAGTTTGTCGCCAGAAGGTGACtgcgg > 1:12269/1‑139 (MQ=255)
cacaCCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTGTCATTGGCACCAATATCAATCCACAGTTTGTCGACAGAACGTGAAtgcct > 8:1047114/1‑138 (MQ=255)
acacCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACtgcgtg < 1:230727/140‑1 (MQ=255)
cacCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTTGCACCAATATAAATCCCCAGTTTGTAGCCAGAATGTTActgcctgc > 6:1008239/1‑140 (MQ=255)
cacCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTGTGTTTGGGCCCAATATAAATACACAGTTTGTCGACAGAAAGTGACtgcgtgc > 2:4196/1‑140 (MQ=255)
aTCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTGTGTCGTTGGCACCAATATCAATCCAGCCTTTGTAGACAGCAGGTGACTGCGGGCGCgcgt > 7:724764/1‑140 (MQ=255)
cGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTTGCACCAATATCAATCCACAGTTTTTCGACAGAAGGTGCCTGCGTGCGCtcgtcg > 2:566835/1‑140 (MQ=255)
cGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCGTTTTGTTTGGCACCAATATCAATCCACAGTTTGTCGACATAAGGTGTCTGCGTGCGCtagtcc > 7:18771/1‑139 (MQ=255)
tttGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATACACAGTTTGTCGACAGAAGGTTACTGCGTGCGCTCGTCGcc > 2:606973/1‑140 (MQ=255)
tggAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGATTGCCCTTTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGTCTGCGTGCGCTCGTCGCCTTTGGc < 2:3633/139‑1 (MQ=255)
gAGTTGCGGCGGGTTATACAGAGGGCCAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCATTGTCTTTTGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCaa < 8:685421/140‑1 (MQ=255)
ggcggGTTATACAGAGTGACATGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTgg < 4:909820/138‑1 (MQ=255)
ggcggGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTa < 1:248685/140‑1 (MQ=255)
ggcggGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTa < 5:971163/140‑1 (MQ=255)
ggcggGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTa < 7:741118/140‑1 (MQ=255)
ggcggGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGAGCGCTCGTCGCCTTTGGCAAAGTgg < 4:159547/138‑1 (MQ=255)
ggcggGGTATACAGAGTGACAGGTGTACCGACCTGAATGCCCATGCGTATAGCGGCGGCTTTGTCTTTGGCACCAATATCAATCCACAGGTTGTCGACAGAAGGTGACTGCGTGCGCGCGTCGCCTTTGGCAAAGTGGTa < 6:829587/140‑1 (MQ=255)
ggcggGGTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTa < 5:1475/140‑1 (MQ=255)
ttaCAGAGTGACAGGCGTACCTACCTGTATTCCCATTAGTATCGCGTCGTCTTTGTCTTTGGCACCAATAGCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGGCGCCTTTGGCAAAGGGGTAGTACTTaa < 2:787682/139‑1 (MQ=255)
ataCAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTaa < 5:691021/140‑1 (MQ=255)
aCAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGCCTTaa < 3:340288/138‑1 (MQ=255)
agTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGTTTTGGTTTGGCGCCAATATGAATCCCCATTTTGTCGACAGAAGGTGACTGCGGGCGCTCGTCGCCATTGGCAAAGTGGTTGGACTTAATGCCgc > 7:1010503/1‑139 (MQ=255)
agTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTTTGTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGa > 1:628362/1‑140 (MQ=255)
agTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGa < 5:519964/140‑1 (MQ=255)
agTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGa < 7:264657/140‑1 (MQ=255)
agTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCGTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGGAAAGTGGTAGGACTTAATGCCGa > 2:42897/1‑140 (MQ=255)
agTGACAGGCGTACCGACCTGAATGCCCATGCGTATAGCGTCGTGTTTGTCTTTGGCCCCAATATCAATACACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCGTTGGCAAAGTGGTAGGACTTAATGCCgc > 1:1055347/1‑139 (MQ=255)
gTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGGTTGTGTTTTGCCCCAATATAAATACACAGTTTGTGGCCAGAAGGTGACTGCGTGCGCGCGTCGCCTTTGGCAAAGTGGTTGGACTGAATGCCGaa > 5:758904/1‑139 (MQ=255)
tGACATGCTTACCGACCTGATTGCACATTCGTATATGGTCTTATTTGTCTTTGGCACCAATATCAATCCTCAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATa < 8:622525/140‑1 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGGTTGTCTTTGGCCCCAATATCAATCCACACGTTGTGGACAGAAGGTGTCGGCGGGCGCTAGTCGCCGTTGGGAAACTGGTAGGACGTAATGCCCATa > 7:483112/1‑140 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTTTATTTGGGACCAATATGAATCAACAGTTTTGAGACAGAAAGTGACAGCCTGCGCACGTCCCCTGTGGCAAAATGGTAGGACTATATTCCGa > 4:755326/1‑138 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGa < 4:598481/138‑1 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGa < 3:404258/138‑1 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGa < 4:1091952/138‑1 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGa < 3:602246/138‑1 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATa < 1:4196/140‑1 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATa < 2:169082/140‑1 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATa < 2:294014/140‑1 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTAGTTGGCACCAATATCAATACACAGTTTTTGGTCAGAAGGTTACTGCGTGCGGACGGCGGCTTTTGCAAATGGGGAGGACGTTATTGCGATa > 8:974327/1‑140 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGGCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGa < 3:740236/138‑1 (MQ=255)
tGACAGGCGTACCGACCTGAATGCCCATTCGTAGAGCGTCGTGGTTGTGGTTGGCGCCAATATCAATCCCCAGATTGTCGACAGAAGGTTACTGCGTGCCCGCGTCCGCGTTGGCAAAGTGGGAGGGCTTTTTGCCgg > 4:1112459/1‑137 (MQ=255)
ccAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATa < 3:633187/137‑1 (MQ=255)
aCAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTGGTTGTCTTTGGAACCAATATCAATCCCCAGTTTGTAGACAGAAGGTGACTGCGTGCGCTCGGAGCGGATGGGAAATTATAAGGACATAATGCCGCTacc > 6:127635/1‑139 (MQ=255)
ggCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACAccc < 2:266152/140‑1 (MQ=255)
gCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACAcccc < 1:307204/140‑1 (MQ=255)
gTACCGACCTGAATGCCCATTCGTATAGCGTCGTGTGTGTATTTGGGGCCAATATCAATCCCCGGGTTGTGGACACAAGGGGACTGGGTGGGCTGGTCGCCTGTGGCGAAGTGGGTGGTCTTAATGCCGCTGCACCCCAt > 7:664959/1‑140 (MQ=255)
gTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTTGCCCCAATATAAATCCACAGTTTGTAGACAGAAGGTGGCTGCGTGCGCGCGTCGCCGTTGGGAAAGTGGGTGGACGTAATTCCGATACAccccca > 6:660680/1‑138 (MQ=255)
aCCGACCTGAATGCCCATTCGTATAGCGGCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGa < 8:18771/140‑1 (MQ=255)
cagACCTTAATGCCCATTCGTATAGCGTCGTATTTGTATTTTGCACCAATATAAATCCACAGATTTTAGAAAGAAGGTTTCACCCTGCGCTAGTCGCCTTTGGAAAAATCGGATGCCTTACTACCGCTAAAACCCATg > 4:434192/3‑138 (MQ=255)
aCCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCCCCAATATAAATCCACAGTTTGTCGACAGAAGGTGCCTGCGTGCGCGCGTCGCCGTTGGCAAAGTGGTAGGACTTAAAGCCGCTACACCCCATGACTgg > 2:967939/1‑140 (MQ=255)
ccTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTGGc < 8:559858/140‑1 (MQ=255)
tGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATACACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCCGTACCCCCCCAGAATGGCCCTTTg > 8:341872/1‑140 (MQ=255)
tCGTATAGCGTCGTCTTTGTCTTTGGGACCAATATCAATCCACAGTTTGTCGAAAGAATGTGACTGCGTGCGCTCGTCGCCGTTGGCAAAGTGGGAGGACTTAATGGCGATACACCCCATGACTGGCCCTTTGTcccc > 4:1027906/1‑138 (MQ=255)
cGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGTCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTGGCCCTTTGTCCCCg < 3:915403/138‑1 (MQ=255)
cGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTGGCCCTTTGTCCCCGGt < 1:669941/140‑1 (MQ=255)
gTATAGCGGCGTCTTTGTCTTTGGCACCAATATCAATCCACACTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTGGCCCTTTGTCCCCgg < 4:106289/138‑1 (MQ=255)
gCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTGGCCCTTTGTCCCCGGTGAgg < 3:309436/138‑1 (MQ=255)
tcgtcTTTGTGTTTGGCACCAATATAAATACACAGTTTGTAGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGACGATACACCCCAAGACAGGCCCTTTGTCCCCCGTGAGGGTGAc > 2:1112789/1‑140 (MQ=255)
tcgtcTTTGTCTTTGGCACCAATATAAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCATTGGCAAAGTGGTAGGGCTTAATGCCGATAAACCCCATGACTGGCCCTTTGTAACCGGTGAGGGTGAc > 5:324444/1‑140 (MQ=255)
cgtcTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGGGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACg < 6:374133/140‑1 (MQ=255)
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CCGCTACACCGAGCAGGGCAGTACAGCCCAGACGATCGTCTAGTGCTTTACTGCACACCAGATCGTTTGCCAGGAGTTGCGGCGGGTTATACAGAGTGACAGGCGTACCGACCTGAATGCCCATTCGTATAGCGTCGTCTTTGTCTTTGGCACCAATATCAATCCACAGTTTGTCGACAGAAGGTGACTGCGTGCGCTCGTCGCCTTTGGCAAAGTGGTAGGACTTAATGCCGATACACCCCATGACTGGCCCTTTGTCCCCGGTGAGGGTGACGAT > NZ_CP022686/3390466‑3390742
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
