Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F35 I0 R1
|
195 |
10216.4 |
8585726 |
98.3% |
8439768 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,159,673 |
C→A |
16.9% |
A167E (GCA→GAA) |
CIW80_RS10780 → |
amino acid ABC transporter substrate‑binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,159,673 | 0 | C | A | 16.9%
| 385.7
/ 17.0
| 195 | A167E (GCA→GAA) | CIW80_RS10780 | amino acid ABC transporter substrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base C (76/79); new base A (2/37); total (79/116) |
| Fisher's exact test for biased strand distribution p-value = 9.20e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 199 total aligned reads displayed.
GGCGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAA > NZ_CP022686/2159534‑2159810
|
cGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTTATACCGAACTCAACGTCGCCGATTACTTCACGGCaa > 3:387445/1‑140 (MQ=255)
cGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCaa < 2:286557/140‑1 (MQ=255)
cGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCaa > 2:129940/1‑140 (MQ=255)
cGTCACTTATTACGACGGCATTGGCTTACTGACGCACGATAAAGCGTGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCaa < 4:359757/140‑1 (MQ=255)
gTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCa < 6:493223/138‑1 (MQ=255)
aCTTATTACGACGGCATTGGCTTCCTGCCGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATTCCGAACTCAACGTCGCCGATTACTTCAAGGCAaataa > 7:415991/1‑140 (MQ=255)
aCTTATTACGACGGCATTGGCTTCATGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCACGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAaataa > 3:456213/1‑140 (MQ=255)
tattaCGACGGCATTGGCTTCCTGACGCACTATAAAGCGGGGCTAAAATGCGCGAAAGAACGGCATGGCGCTACCGGCTTCATTCAGGCGGGGACGGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAatat < 8:737815/140‑1 (MQ=255)
tttaCGACGGCATTGGCTTCCTGACGCACTATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAataata < 6:858464/137‑1 (MQ=255)
tttaCGACGGCATTGGCTTCCTGACACACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATg < 2:173578/139‑1 (MQ=255)
attaCGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATg < 7:604781/140‑1 (MQ=255)
attaCGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATAGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAataata < 5:197784/138‑1 (MQ=255)
cgacgGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATg < 1:936784/136‑1 (MQ=255)
gacgGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAACGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACACAACGTCGACGCTTACTTCAAGGCAAATAATATGAAGTa > 8:515130/1‑140 (MQ=255)
acgGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACAGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTac > 4:295372/1‑140 (MQ=255)
cgGCTTTGGCTTCCTGACGCAAGATAAAGGGGGGCTAAAACGCGCTAAAGAACTGGATGGCGCTACGGTTTGCATTCAGGCGGGGACTGATACCGAACTCAACGGCGCGGATTACTTCAAGGAAAATAATTTGAAGTa < 6:793514/138‑1 (MQ=255)
cgGCATTGGCTTCCTGACGCACGATAAAGCGGGGATAAAACGCGCTAAATAACTTGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGACCTCAACGTCGCCGATTATTTCAAGGCAAATAATATGAAGTaca < 7:709293/140‑1 (MQ=255)
ggCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGAAAATAATATGAAGTacac > 1:353571/1‑140 (MQ=255)
cATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTacac > 6:294980/1‑138 (MQ=255)
ttGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAGGTACACGc > 6:81789/1‑138 (MQ=255)
ggCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGTTACCGAACTCACCGCCGCCGATTACTTCAAGGCAAATAATATGAAGAACACGCCAGt < 4:168800/140‑1 (MQ=255)
gCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGc < 8:112472/115‑1 (MQ=255)
gCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGc > 7:112472/1‑115 (MQ=255)
cTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCtt > 1:681421/1‑140 (MQ=255)
cTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCtt > 1:123729/1‑140 (MQ=255)
gccGCACGATACAGCGGGGCTAAAAAGCGCGAAAGAACTGTATGGCGCTAACGTCTTCATTCAGGCGGGGACTGATACCGAACTCAAGGCCGCCTATTACTTCAAGGCAATTAATATGATGTTCACGCCAGTAACCTTCg < 8:645870/138‑1 (MQ=255)
gACGCACGAAAAAGCGGGGCTAAAACGGGCGAAATAACGGGATGGCGCTACCGTCTGCATACCGGCGGGGACTGCTACCGAACTCAACGGCGCCGATTACTTCATGGCAAATAATATGAAGTACACGCCAGTAACCtt < 6:951582/138‑1 (MQ=255)
gggggCTAAAAAGCGCTAAAGAAATGGATGGCGCTACCGTATGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGTTTACTTAACGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGaa < 4:645176/139‑1 (MQ=255)
cGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAATGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACg > 5:1038799/1‑138 (MQ=255)
ggCTAAAAAGCGCGAAAGACCTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCa > 8:334890/1‑140 (MQ=255)
ggCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTACCCTTCGATCGCTCAGACGAATCa > 1:1096272/1‑140 (MQ=255)
ggCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCa > 1:1115780/1‑140 (MQ=255)
aaaaaGCGCGAAATAACTGGTTGGCGCTACCGTCTGCATTCTGGCGGGGAATGATACCTAACTCAAGGGCGCCGATTACTTCAAGGAAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGa < 4:41586/140‑1 (MQ=255)
aaaaaGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCACAGACGAATCAGc > 6:767431/1‑138 (MQ=255)
aaacGCGCGAAAGAACTGGATGGCGCTACCGGCTGCATTCAGGCGGGGACTGATACCGAACGCAACGGCGCCGATAACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGaa < 2:853934/140‑1 (MQ=255)
aaaaGCGCGAAAGAACTGTATGGCGCTACCGTCTGCATTCCGGCGGGTACTGATACCGAACTCAACGGCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGaa < 4:1035494/140‑1 (MQ=255)
aaaaGCGCCAAACAACGGGTTGGCGCTACCTGCGGCATTAAGGGGGGGTCTGCAACCGAAACAAACGGCGCCGATTACTTAAAGCCAAAAAATTTGAATTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGaa < 4:92472/140‑1 (MQ=255)
cgcgAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGctc > 7:206882/1‑140 (MQ=255)
cgcgAAAGAACTGGAGGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGCACTCAACGTCGCCGATTACTTGAAGGCAAATAATATGAAGTCCCCGCCAGTTCCCTTCGATCGCTCCGCCGATTCAGCGAAGGctc > 8:400342/1‑140 (MQ=255)
cgAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGctc > 5:478487/1‑138 (MQ=255)
gggATGCCGCTACCGTCTGCATTCAGGCGGGGACTGAAACAGAACACAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTCCACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAAGCgg < 6:502290/137‑1 (MQ=255)
gttGGCGCTACCTTCTGCATTCAGGCGGGGAGTGATACCGAACTCAACGTCGCCGATTACTTCAAGGAAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCACACGAATCAGCGAAGGCTCTGGAATCGGGCCg < 7:500165/138‑1 (MQ=255)
gATGGCGATACCGTCTGCTTTCAGGCGGGGAATGATCCCCAACACAACGTCGCCTATTACTTCACGGAAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCg < 7:320085/140‑1 (MQ=255)
cgcAACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATAACTTCAAGGGAAATAATTTGAAGTACACGCCAGTAACCTTCGATCGCTCAGCCGAATCAGCCAAGTCTCTGGAATCGGGCCGcatcg > 8:800147/1‑136 (MQ=255)
cctcaCCGTATCCATTCCCGCTGCGACTGAAACAAAACACACCTGCGCCTTTTACTTACAGGCTAATAATATTTAGTACCGGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCg < 4:985207/136‑1 (MQ=255)
cccTACCGTCTGCATTCAGGCGGGGACTCAAACCGACCCCAACGTCGCCGATTACTTCAAGCCAAATAATATTAAGAACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCg < 3:216690/138‑1 (MQ=255)
gcTACCGTCTGCTTTCCGGCGGGGACTCATACCGAACTCAACGGCGCCGATTACTACAAGCAAAATAATATCAATTCCACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGc < 5:679305/138‑1 (MQ=255)
gcTACCGGCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGAAAATAATATGAAGAACACTCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGa < 4:158071/140‑1 (MQ=255)
cTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCg > 6:1010669/1‑138 (MQ=255)
ccGTCTGCATTCTGGCGGGGACTTATACCCAACTCAACGACGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATa < 6:657627/138‑1 (MQ=255)
ccGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGc < 2:620362/128‑1 (MQ=255)
tGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAg > 8:941325/1‑76 (MQ=255)
tGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGc > 1:958125/1‑140 (MQ=255)
tGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGc > 1:762966/1‑140 (MQ=255)
ccATTCCGGGGGGTACTGATACCGAACTCACCGTCGCGTATAACTTCATGCAAAAAAATCTGAAGAACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTgg < 5:31987/137‑1 (MQ=255)
ctttCAGGCGGTGACTTATCCCGAACTCCACGTCGACTATTACTTAAATCCAAATAATATGAATTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCt < 2:897341/138‑1 (MQ=255)
cATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGc > 6:16109/1‑138 (MQ=255)
cATTCAGGCGGGGACTGATACCGAACTCAACATCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATc > 5:143666/1‑86 (MQ=255)
aTTCTGGGGGGGACTGATACCGAACTCAACGTCGCCGATAACTTCAAGGAAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGcc < 6:146189/138‑1 (MQ=255)
cctgCGGGGACTTATACCTAACTAAACGTCGACTATTACTTAAAGGAAAATAATATGATTTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGa < 3:983254/137‑1 (MQ=255)
ccggCGGGTACTGAAACCTAACTCAACGTCGCGGTTTACTACAAGTCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGa < 2:991587/138‑1 (MQ=255)
ccggCGGGGACTTAAACCGAACTCAACGGCGCCGATAACTTAACGCCAAATAATATGAAGAACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGa < 1:1100829/138‑1 (MQ=255)
ggCGGGGACTTATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAAAAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatc < 2:733079/140‑1 (MQ=255)
gCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatca > 2:806154/1‑140 (MQ=255)
gggtACTTATACCTAACAAATGGTCCCGGATTACTTAAAGCCAAATAATATCACTTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatcaat < 1:103257/140‑1 (MQ=255)
ggggACTTCTCCCGAACTCACTGTCGCCGATTACTTCAAGGCAAAAAATATGAAGAACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatca < 6:707822/138‑1 (MQ=255)
ggggACTTATACCGAACTCAACGGCGCCGATTACTTCAAGCAAAATAATATCAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatcaat < 3:2643/140‑1 (MQ=255)
ggggACTGATACCGAACTCACCGTCGCCTATTAATTCAAGGCAAATAATATGAAGAACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatca < 5:816679/138‑1 (MQ=255)
gggACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATg < 4:833687/51‑1 (MQ=255)
gttcTGTTACTGAAGTCCACTACGCCTATTACTTAATGGAAAATTATTATAAGTACTGGCCAGTAACCTTCGATCGCTCTGACGAATCAGCGAAGGCTCTGGAATCGGGCGGCTGCGATACTCTGGCCTCGGataactca < 8:752513/137‑1 (MQ=255)
ggatttaTACCGAACTCAACGGCGCCTATTACTTCAAGGAAAATATTATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatcaatca < 2:1092626/134‑1 (MQ=255)
ggAGTGATCCCGAACTCAAGGTCGCCGATACCATCAAGCAAAAAAATATGAAGAACACGCCAGTAACCTTCGATCGGTCAGACGAATCAGCGAAGGATCTGGAAGCGGGCCGCTGCGATACTCTGGCCTCGGatcaat < 5:887801/138‑1 (MQ=255)
ggACTGATACCGAACTCACCGTCCCCGATTACTTCAAGGCAAATAATATGAAGTCCACGCCAGTAACCTTCGAGCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatcaatca < 4:369332/140‑1 (MQ=255)
ggACTGATACCGAACTCAACGGCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatcaatca < 3:590797/140‑1 (MQ=255)
gACTTATACCGCACTCAACTCCGCCTTTTAATTATAGCAAAATAATATTATGTCCACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATcac < 1:1002489/140‑1 (MQ=255)
gACTGATACCTAACTCAACTCCGCCGATTAATCCAGGGCATATAATATCATGTCCACGCCAGTAACCTTCGATAGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATcac < 7:193408/140‑1 (MQ=255)
gACTGATACCGAACTCAACGTCGCCTATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatcaatc < 6:654896/138‑1 (MQ=255)
aCTTATACCGAACTCATGGTCGCCTATTACTTCAAGGCAAATAATATTAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATcaca < 3:145916/140‑1 (MQ=255)
aCTGATCCAGTAATCAACGTCGCCTAATCCTTAACGTAAAATTATATGAAGTCCACTCCAGTAACCTTCGATCGCTCAGTCGAATCAGCGATGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATcaca < 2:474647/140‑1 (MQ=255)
aCTGATACCGCACTCACCGCCGCCGATTACTTCAAGGCAAATAATTTTAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatcaatca < 5:846793/138‑1 (MQ=255)
aCTGATACCGAACTCACCGCCGCCGATTACTTCAAGGCAAATAATATGAATTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATcaca < 4:535986/140‑1 (MQ=255)
aCTGAACCCGAACTCAACGTCGCCCATAACTTCACGGAAAATAATATGAATTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATcaca < 1:641377/140‑1 (MQ=255)
aCTGAAACCGAACTCAACGTCGAGGATTACTTCAAGGAAAAAAATATGACGTACACGCCAGTAACCTTCGATCTCTCATACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatcaatca < 5:619873/138‑1 (MQ=255)
aTACCGCACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCTGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCCAAACTg > 7:982588/1‑140 (MQ=255)
aaCCGAACTCACCGTCGCCGATTACTTCAAGCCAAATAATATCAAGACCACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGt < 7:913935/139‑1 (MQ=255)
aCCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTg > 5:500661/1‑138 (MQ=255)
cGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATg < 4:180129/140‑1 (MQ=255)
aaCTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACACCTGTATGcc > 4:780363/1‑140 (MQ=255)
cTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATgac > 5:773835/1‑136 (MQ=255)
cTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATGcc > 5:543750/1‑138 (MQ=255)
aaCGTCGCCGATTACTTCAAGGCAAATAATATGAAGTaca > 7:362181/1‑40 (MQ=255)
aaCGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCGGGCCTCGGATCAATCACAACTGTATGCCCTgcg > 2:634532/1‑140 (MQ=255)
cggcGCCTATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCa < 8:366327/137‑1 (MQ=255)
cGTCGCCTATTACTTCAAGCAAAATAATATTAAGACCACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCa < 7:556603/140‑1 (MQ=255)
aggagacGATTACTTCACTGAAAATAATATTAAGGACCCGCAAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCa < 2:955517/134‑1 (MQ=255)
ccGATTACTTCAAGCCAAATAATATCAACTACACGCCAGTACCCTTCGATCGCTCAGACGAATCAGCGCAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCATCa < 6:179040/138‑1 (MQ=255)
aTTACTTCAAGGCAAATAATATGCAGTACACCCCAGTAACCTTCGATCGCTCAGACGACTCAGCGAAGTCTCTGGAATCGGGCCGCTGCGATACTCGGGACTCGGATCACTCACAACTGTATGCCCTGCGCATCAAATTa > 7:243023/1‑140 (MQ=255)
tagttCAAGCCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAg < 4:376305/137‑1 (MQ=255)
taattCAAGCAAAAAAATATTAAGACCACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCGCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAg < 1:527823/137‑1 (MQ=255)
aaaGGAAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAAcc < 1:129940/139‑1 (MQ=255)
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GGCGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAA > NZ_CP022686/2159534‑2159810
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
