Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F2 I0 R1
|
233 |
6461.8 |
9239822 |
98.3% |
9082745 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,159,673 |
C→A |
13.2% |
A167E (GCA→GAA) |
CIW80_RS10780 → |
amino acid ABC transporter substrate‑binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,159,673 | 0 | C | A | 13.2%
| 429.0
/ 19.0
| 200 | A167E (GCA→GAA) | CIW80_RS10780 | amino acid ABC transporter substrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base C (88/81); new base A (2/29); total (90/110) |
| Fisher's exact test for biased strand distribution p-value = 7.79e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 207 total aligned reads displayed.
GGCGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAAC > NZ_CP022686/2159534‑2159811
|
ggCGTCACTTATTACGTCGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGc < 4:786554/140‑1 (MQ=255)
ggCGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAACGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGc < 4:393732/140‑1 (MQ=255)
gCGTCACTTATTACGACGGCATTGGCTTCCTGGCGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATTCCGAACTCAACGTAGCCGATTACTTCAAGGCa > 7:959578/1‑140 (MQ=255)
gCGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCa > 3:959204/1‑140 (MQ=255)
gCGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCa > 7:401740/1‑140 (MQ=255)
cGTCACTTATTACGTCGGAATTGGCTTCCTGTCGCTCGATAAAGCGTGTCTTAAAAGCTCGATAGAACTGGATGGCGCTACCGTCTTCATTCAGGCGGGGTCTGATTCCGAACTCAACGTCGCCGATTACTTCAAGGCaa < 4:286959/140‑1 (MQ=255)
cGTCACTTATTACGCAGGCATTGGCATCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAACGAACTGGAGGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGc < 6:1027430/138‑1 (MQ=255)
cGTCACTTATTACGACGGCTTTGGCTTCCTGACGCACGATAATGCGGGGCTAAATAGCGCGAAAGCACTGGATGGCGCTACCGTCTGCATTCAGGCGTGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCaa < 7:272837/140‑1 (MQ=255)
gTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCTAACTCAACGTCGCCGATTACTTCAAGGCaaa > 3:732959/1‑140 (MQ=255)
gTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCaaa < 3:624576/140‑1 (MQ=255)
gTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCa > 5:808486/1‑138 (MQ=255)
gTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCa > 5:940729/1‑138 (MQ=255)
tCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGTAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAaat < 3:704159/140‑1 (MQ=255)
tttaCGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTATAAAGCGCGAAAGAACTGGAGGGCGCTACCGTCTGCATTCAGGAGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATg < 4:995421/139‑1 (MQ=255)
attaCGTCGTCAGTGGCTTGCTGAAGCACGTTCAAGCGGGGCTAAACAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGAAACCGAACGCAACGGCGCCGATTACTTCAAGGCAAataata < 6:21762/138‑1 (MQ=255)
attaCGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATg < 3:1022043/140‑1 (MQ=255)
acgGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTac > 2:540308/1‑140 (MQ=255)
acgGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGCACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTac > 7:162227/1‑140 (MQ=255)
ggtaaTTGGCTTCATGACGCACGATAAAGCGGGGCTAAAAAGCGATAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTTATCCCGAACTAACCGTCGCCTATTACTTCAAGGAAAATAATATGAAGAaca < 4:754627/136‑1 (MQ=255)
cgGCTTTGGCTTCCTGACGCACTATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCTTTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTaca < 2:821460/140‑1 (MQ=255)
cgGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTaca > 4:147884/1‑140 (MQ=255)
cgGAATTGGCTTCCTGCCGCACTATAAAGCGGGGCAAAAAAGCGCTAAAGAACTGGATGGCGCTACCGTCTGCATACAGGGGGGGACTTATACCTAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTaca < 8:587505/140‑1 (MQ=255)
ggCATTGGCTACCTGACGCAAGATAAAGCGGGGCTAAAAATCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTAGCCGATTACTTCAATGAAAATAATATGAAGTaccc > 4:738610/1‑138 (MQ=255)
ttGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGccc > 1:696890/1‑139 (MQ=255)
tggatcccTGACGAACGATAACCCGGGGCTAAAAAGCGCGAACCAACTGGATGGCTCAACCGTCTGCATTCAGGCGGGTACTGATACCGAACTCAAGGTCGCCGAATAATTAAAGGAAAATAATATGAAGTACACGCCAg < 2:701153/134‑1 (MQ=255)
gggCTTCCTGACGCACGAAACAGCGGGGCTAAAAAGCGCGAAACAAGTGGAGGTCGCTACCGTCGGCTTTCAGGGGGGTACTTAGCCCGAACTCACCGGCTCCGATACCTTCAAGGCAATTAATATGAAGACCACGCCAg < 8:917114/139‑1 (MQ=255)
cTGCCGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCtt > 7:807723/1‑140 (MQ=255)
cTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCtt > 3:19878/1‑140 (MQ=255)
gACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGCTACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCtt > 6:1085376/1‑138 (MQ=255)
ccGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGAATTCAGGCGGGGACTTATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTc < 5:286299/137‑1 (MQ=255)
aCGATAAAGCGGGGATAAAAAGCGCGAAATAACGGGATGGCGCTACGGTCTGCATTAAGGCGGGTACTTATACCGACCTCAAGGTCGCCGATTACTTCAAGGAAAATAATTTGAAGTACACGCCAGTAACCTTCGATc < 6:776115/138‑1 (MQ=255)
aTAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTAACGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTCACCTTCGATCGcaca > 4:836219/1‑140 (MQ=255)
aaaGCGGGGCTAAAAAGCGCTAAAGAACTGGTTGGCGCTACCGTCTGAATTCTGGCGGGGACTTAAACCGAACTAAACGTCGCCGATTACTTCAAGGCAAATAATATGTAGTACACGCCAGTAACCTTCGATCGCTCAGa < 1:205185/140‑1 (MQ=255)
cGGGGCTAAAAAGCGCGAACGAACTGGAGGGCGCTACCGTCTGCATTCAGGCGGGGCCTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACg > 6:884940/1‑138 (MQ=255)
ggggTTAAAATGCGCGAAAGAAAGTGATGGCGATACGTTCTGCATTCTGGCGGGGACTTATACCGAACTCAACGTCGCCTATTACTTCAAGGCAATTAATATGAAGAACACGCCAGTAACCTTCGATCGCTCAGACGAAt < 8:17845/140‑1 (MQ=255)
ggCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGATCTCCACGTCGCCGAGTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGCCGAATCa > 1:239384/1‑140 (MQ=255)
ggCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCa > 3:543221/1‑140 (MQ=255)
cTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTACCCTTCGATCGCTCCGCCGAATCa > 5:948715/1‑138 (MQ=255)
cTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCa > 5:971024/1‑138 (MQ=255)
cTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCa > 6:373733/1‑138 (MQ=255)
aaaaaGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCACCGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCACTCAGACGAATCAGc > 6:188673/1‑138 (MQ=255)
aaacGCGCGAAAGAACTGGAGGGCGCTACCGGCTGCATTCAGGCGGGGACTGAAACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATCAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGaa < 4:644701/140‑1 (MQ=255)
aaacGCGCCAAAGAACTGGCTGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCCAACTAAACGGCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGaa < 2:212980/140‑1 (MQ=255)
aaaaGCGCTAAAGATCTGTATGGCGCTACGGTCTGCATTCAGGCGGTGACTTAAACCTAACTCAACGTCGCCTATTACTTCAAGGAAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGaa < 3:792844/140‑1 (MQ=255)
aaaaGCGCGAAAGAACTGTTTGGCGCTACCGTCTGTATTCAGGCGGGTACTTATACCTAACTAAACGGCGCCTATTAATTCAAGCCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGaa < 1:748197/140‑1 (MQ=255)
aaaaGCGCCAAACAACTGGATGGCGCTACCGTCTGCATTCCGGGGGGGACTTAACCCGAACTCACCGTCGCCTATAAATTCACGGAAAATAATTTGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCg < 5:697188/138‑1 (MQ=255)
aaGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGaa > 5:315719/1‑138 (MQ=255)
cgcgAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGctc > 8:695677/1‑140 (MQ=255)
cTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCggg > 3:1062702/1‑140 (MQ=255)
tttgggtcTACCTTCTGAATTCTGGCGGTTAATGATACAGAACTCAACGTCGCCGATTACTTCTCTTAAAATAATATTAAGTACACGCCAGTAACCTGCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCg < 2:520624/133‑1 (MQ=255)
gATGGCTCTACCGTCTGCATTCTGGCGGGTATTGATACCGAACTAAACTGCGCCCTTTATTTCACTGCAAATATAATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCg < 2:1068782/140‑1 (MQ=255)
tGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCg > 6:996250/1‑138 (MQ=255)
gtcgttACCGTCTTCATTCAGGCGGGGATTGATACCGAACTCAACGTCGCCTATTACTTCAAGGCAAATAATTGTAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCTGGCCGCTg < 4:427191/135‑1 (MQ=255)
ggCGATACGTTCTGCTATCAGGCTGGGACTTATACCTAACTCAACTTCGCAGATTACTCAAAGGAAATTAATATGAAGTAGACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTg < 1:816561/140‑1 (MQ=255)
cTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCCACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTACCCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGACTCGGGCCGCTGCg > 5:908448/1‑138 (MQ=255)
ccttCTGAATTCAGGCGGGGACTGATACCGAAAACAACGTCGCCTTATACTTCACGGAATATATTATTAAGACCACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATAct < 2:783612/137‑1 (MQ=255)
ccGTCTGCATTCAGGCGTGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCGGGAATCGGGCCGCTGCGATAct > 3:688182/1‑140 (MQ=255)
ccGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGCCGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATAct > 2:102406/1‑140 (MQ=255)
gTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATAct > 6:143488/1‑138 (MQ=255)
tCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTg > 2:133830/1‑140 (MQ=255)
ttcATTCAGGCGGGGACTGATACAGAACTCAACGTCGACGATTACTTCAAGGCAAATAATATGAAGTACACTCCAGTAACCTTAGATCTCTCAGACGAATCAGCTAAGGCTCTGGAAGCGGGACGCTGCGATCCTATGGc > 2:578535/3‑140 (MQ=255)
tGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGc > 7:517295/1‑140 (MQ=255)
tGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGc > 8:72789/1‑140 (MQ=255)
tGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGc > 8:275916/1‑140 (MQ=255)
tGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCACACGCATCAGCGAAGGCTCTGTAATCGGGCCGCTGCGATACTCTGGc > 3:492529/1‑140 (MQ=255)
cATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAaataat > 5:629263/1‑58 (MQ=255)
cATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAaataat < 6:629263/58‑1 (MQ=255)
atgccggCGGTGACTGATACCTAACTCAACGTCCCCTATTACTTCAAGTAAAATAATATTAAGTCCACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTc < 7:125003/135‑1 (MQ=255)
cgggCGGGGACTTAAACAGACCTCATCGTAGAATATTAGTTCAGTGAAATTAATATTATGTCCACGCGAGTAAACTTCGATCGCTCATACTAATCAGCGTAGGGTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCTGa < 8:1075012/138‑1 (MQ=255)
ccggCGGGTATTTATCCCGACCTCAACTGGCCCTATTACTTCAAGGCAAAAAATATTAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGa < 3:89967/138‑1 (MQ=255)
ccggCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGACGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCg < 6:724696/136‑1 (MQ=255)
aGGCGGGGACTGCTACCGAACTCAACATCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGATCTGGAATCGGTCCGCTGCGATACTCTGGCCTCggct > 8:1014517/1‑138 (MQ=255)
ggggggtACTGATACCGACCTAACCTTCGACTAATACTTCAAGACAAATAATTTGAAGAACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatc < 2:797153/137‑1 (MQ=255)
ggCGGGTACTGAAACCGACCTCACCGTCGCCTATTACATCACGGAAAATAATATGAAGAACACGCCAGTAACCTACGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatc < 3:1100364/140‑1 (MQ=255)
ggCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatc > 3:322821/1‑140 (MQ=255)
ggggACTTATACCGAAATCAACGTCGCCTATAACTTCAAGGAAAATAATATTAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatcaat < 8:460692/140‑1 (MQ=255)
ggggACTCATACCCAACTCAACGGCCCCGATAACTTCAAGGAAAATAATATCAAGAACACGCCAGTAACCTTCGATCGCTCATACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatcaat < 3:160034/140‑1 (MQ=255)
gggACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatcaatc > 1:865422/1‑140 (MQ=255)
ggAGTGATACGTAACTCACCGTCGCCTTTAAGTTCACGTAAAATAATATGATGTACACGCCATTAACCTTCGATCTCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatcaat < 5:494686/138‑1 (MQ=255)
ggACTTATACCTAACTCACCGTCCCCTATAACTTCATGCCAAATAATATGAATTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatcaat < 5:1136025/138‑1 (MQ=255)
gACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATcac > 8:411041/1‑140 (MQ=255)
aCTGATACCTAACTCAACGGCGCCTATTACTTCAAGGAAAATAATATGACGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGAGCAATcaca < 2:46595/140‑1 (MQ=255)
aCTGATACCGAACTCAACTTCGCCGATTACTTCATGCAAAAAAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatcaatca < 5:361446/138‑1 (MQ=255)
aCTGATACCGAACTCAACGTCGCCTATAACTTCAAGCCAAAAAATATGATGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatcaatca < 5:125176/138‑1 (MQ=255)
aCTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatcaatca < 6:174022/138‑1 (MQ=255)
aCTGATACCGAAATCAACGTCGCCTATTACTTCAAGGAAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATcaca < 1:214200/140‑1 (MQ=255)
aCTGAAACCCAACTAAACGTCGCCGATTACTTCCAGGCAAATAATATGAAGAACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatcaatca < 6:596942/138‑1 (MQ=255)
ttaTACCTAAGTCCACGTCGCCGATTACTTCAAGGAAAATAATATTAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATcaca < 6:937058/136‑1 (MQ=255)
tGATACCGAACTCACCGTCGCCGATTAATTCAAGGCAAATAATATTAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAAc < 2:35725/140‑1 (MQ=255)
aTACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGatcaat < 4:688405/132‑1 (MQ=255)
cTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATGCCCt > 1:1138887/1‑140 (MQ=255)
cAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATGCCCt > 5:521700/1‑138 (MQ=255)
aaCGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATGCCCTgcg > 1:144773/1‑140 (MQ=255)
ggTCGCCTATTACTTCCAGGAAAATAATATTAAGTACACGACAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCa < 8:670727/139‑1 (MQ=255)
cGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATGCCCTgcg > 6:525805/1‑138 (MQ=255)
cGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCa < 4:190501/140‑1 (MQ=255)
ccGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCAGGAATCGTGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTAAGCCCTGCGCATCaaa > 2:1195272/1‑140 (MQ=255)
aTTACTTCACGGCAAATAATATGAAGAACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTa < 4:22463/140‑1 (MQ=255)
cAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCaa < 6:49336/138‑1 (MQ=255)
cAAGGAAAATAATATGAAGAACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAAcc < 7:761778/140‑1 (MQ=255)
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GGCGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGCATTCAGGCGGGGACTGATACCGAACTCAACGTCGCCGATTACTTCAAGGCAAATAATATGAAGTACACGCCAGTAACCTTCGATCGCTCAGACGAATCAGCGAAGGCTCTGGAATCGGGCCGCTGCGATACTCTGGCCTCGGATCAATCACAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAAC > NZ_CP022686/2159534‑2159811
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
