Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F36 I0 R1
|
179 |
8076.5 |
8499890 |
98.3% |
8355391 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,184,330 |
G→T |
15.3% |
F64L (TTC→TTA) |
rplO ← |
50S ribosomal protein L15 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,184,330 | 0 | G | T | 15.3%
| 418.0
/ 17.0
| 206 | F64L (TTC→TTA) | rplO | 50S ribosomal protein L15 |
| Reads supporting (aligned to +/- strand): ref base G (122/42); new base T (2/39); total (124/82) |
| Fisher's exact test for biased strand distribution p-value = 6.35e-17 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 206 total aligned reads displayed.
CTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGATACCACGAC > NZ_CP022686/2184194‑2184463
|
cTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAAt > 5:604675/1‑140 (MQ=255)
ttCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGGGTTCAGGTCTACAACACCGCCTTATACTTTAGCCAGGTCAGACAGACGAACTTGGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAAttt < 6:1024128/140‑1 (MQ=255)
tCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCATGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACATACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAAtt > 7:380412/1‑138 (MQ=255)
cacatccaTCGGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCAACAACACCGCCTTCTACTTTAGCCCGGTAAGACAGACGACCTTCGGCTGTAATCGCTGCTTTCCGAGAAGTGAAGCCTAATTTCGGCa < 4:984617/133‑1 (MQ=255)
caaCTCGTGCTGGATACCGATAATGTTAGCCGCTTTCTGCGTGTTCTGGTATACAACACCGCCTTCTAATTTCGCCAGGTCATACAGACTAACTTCGGCTGTAATCGCGGCTTTACGAGATGTGAAGCCGATTTGCGGCa < 6:986945/139‑1 (MQ=255)
aaCTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTc > 7:698882/1‑135 (MQ=255)
aaCTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTc < 8:698882/135‑1 (MQ=255)
aaCTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGc > 7:839205/1‑138 (MQ=255)
aaCTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGc > 7:427203/1‑138 (MQ=255)
actggttCTGGATACCGATAATTTTACCCGCTTTCAGCGTGTTCTGGTCTACAACACCGCATTCAAATTTCGCCCTTTCTTACAGCCGAACTGCGGCTGTAATCGCTGCTTTACTAGAAGTGAACCCTAATTTCGGCAga < 2:563074/134‑1 (MQ=255)
aCTCGATCTGGATACCGATAATGTTAGCCGAGTTCAGGGTGTGCAGTGCAACAACACCGCCTTATACTTTAGCCAGGTCACACAGACGAACTTCGGCTGTAATCGATGGTTAACGAGACGTGAAGCCTAATTTCGGCAga < 4:419235/140‑1 (MQ=255)
tCGCTCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGACTTCTACTTTAGCCAGGTCAGACAGACGAACTTAGGCTGTAATAGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAgacg > 5:636383/1‑140 (MQ=255)
cgttCTGTATACCGATATTGTTCGCCGGTATCAGCGTGTTCCGGTCTACAACACCGCATTCTACTTTAGCCAGGTCACCCAGCCGAACTGCGGCGGTAATGGGTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAgacga < 2:352330/137‑1 (MQ=255)
cGATCTGTATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTACCCCGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTCCGAGAAGTGAAGCCTAATTTCGGCAgacga < 4:302702/140‑1 (MQ=255)
cGATCTGTATACCGATAATGTTAGCCGATTTCAGCGTGTTCAGGTCTACAACCCCGCCTTCTAATTTAGCCAGGTCAGACAGACTAACTTCGGCTGAAATCGCTGCTTTACGAGAAGTTAAGCCTAATTTCGGCAgac < 7:61546/138‑1 (MQ=255)
cGATCTGTATACAGATATTGTTAGCCGCTTTCAGCGTGTTCAGGACTACAACACCGCATTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCTAATTTCGGCAgac < 8:170272/138‑1 (MQ=255)
cGATCTGGATACCGATAATGTTCGCCGCTTTCAGCGTGTTCTGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTTTAATCGCTGCTTTACGAGAAGTGAAGCCTAATTTCGGCAgacga < 3:303119/140‑1 (MQ=255)
cGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCTGGTCTACACCACCCCCTTCTACTTTAGCCCGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTCCGAGAAGTTAAGCCGAATTTCGGCAgac < 8:45502/138‑1 (MQ=255)
cGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACCCCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGACGCCGAATTTCGGCAgac < 7:346239/138‑1 (MQ=255)
cGATCTGGATACCGAAAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTTAAGCCGAATTTCGGCAgacga < 6:657486/140‑1 (MQ=255)
cGATCTGGAAACCGATAATGTTAGCCGCTTTCCGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTACCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGGGAAGCCGAATTTCGGCAgacga < 4:437610/140‑1 (MQ=255)
cGATCTGCATACCGATAATGTTAGCCGATTTCAGCGTGTTCAGGTCTACAACACCGCATTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTTAAGCCGAATTTCGGCAgacga < 2:651094/140‑1 (MQ=255)
cGATATGTATACAGATAATGTATGCCGCTTTCAGGGTGTTCAGGTCTACAAAACAGCTTTCTACTTTAGCAAGTTCAGCCAGACGAACTTCGGCTGTAATCGCTGCTTTATGCGATGTGAAGCCGAATTTTGGCAtacga < 4:255461/140‑1 (MQ=255)
agATCTGGTTACAGATAATGTTAGCCGATTTAAGCTTTTTCTGTTCTACAACACCGCCTTCTACTTTATCCAGTTCATACTGACGAAATTCGGCTGTAATCGCTGCTTTACTAGAAGTTAAGCCTAATTTGGGCAgacga < 2:671139/139‑1 (MQ=255)
aTCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGacgacg > 4:1083874/1‑140 (MQ=255)
tACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCAGAATTTCGGCAGACGACGGTACagc > 2:840296/1‑139 (MQ=255)
cctaTAATGTTAGCCGCTTTCAGGGTGTTCAGGTCTACAACCCCGCCTTCTAATTTAGCCAGGACAGACAGACTAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTTAAGCCGAATTTCGGCAGACGACGGTACAGAgg < 1:286388/137‑1 (MQ=255)
cGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGc > 1:1030747/1‑140 (MQ=255)
cGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACAGCCTTCTAATTTAGACATGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACCGAGGc > 6:14452/1‑140 (MQ=255)
aTAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACCACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAAATTCGGCAGCCGACGGTACAGATGc > 8:261695/1‑138 (MQ=255)
gTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTg > 7:590586/1‑138 (MQ=255)
ttAGCCGCTTTCAGCGTGTTCAGGGCTACAACCCCGCCTTCTACTTTAGCCAGGGCAGAACGACGAACTTCGGCTTTAATCGCGGCTTTCCGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGacc < 4:427570/140‑1 (MQ=255)
aGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGCCAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGaccac > 4:543669/1‑140 (MQ=255)
aGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGCCGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGCCGACGGTACAGAGGCATCTGaccac > 3:611324/1‑140 (MQ=255)
aGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGaccac > 6:777265/1‑140 (MQ=255)
aGCCGCTTTCAGCGTGTTCACATCTAAAACACCGCATTCTACTTAATCCAGGTAATACAGACCAACTTCGGCTTAAATAGCTGCATTACTATAAGTGAAGCCGAATTACGTCAGACGACTGAACAGAGGCATCTTacaaa > 4:892341/1‑137 (MQ=255)
aGCCGCTTTCAGCGTGGTCAGGTCGACAACACCGCCTTCTACGTTAGCCAGGTCAGACAGCCGAACTTCGGCTGTAATCGCTGCTTGACGAGAAGTGAATCCGAATTTCGGCAGACGCCGGGACGGCGGCATCTGacccc > 4:208757/1‑138 (MQ=255)
aGCCGATTTCAGCGTGTTCAGGTATACAAAAAAGCCTTCTACTTTAGCAAGGACAGACAGAAGAACTTAGGCTGTAATCGCTGATTTACGAGAAGTGAAGCCGACTTTCGGCAGAAGACGGTAGAGAGGCAGCTGaccac > 2:972666/1‑140 (MQ=255)
ccGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGaccac > 8:242545/1‑138 (MQ=255)
ccGCTTTCAGCGTGTTAAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACGTCGGCTGTAATCTCTGCTTTACGAGAAGTGAAGCCTAATTTCGGCAGACGACTGTAAAGAGGCATCTGaccac > 8:478924/1‑138 (MQ=255)
tttCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGa > 4:570756/1‑140 (MQ=255)
tttCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGa > 5:857308/1‑140 (MQ=255)
tttCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGa > 6:143430/1‑140 (MQ=255)
tttCAGCGTGTTCAGGTCTACAACACCGCCTTATACTTTAGCCAGGTCAGAAAGACGAACTTCGGCGTTAATCGCTGCTTTACGAGAAGTGAAGCCTAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGa < 4:785632/140‑1 (MQ=255)
ttCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGacc > 3:540491/1‑131 (MQ=255)
ttCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGacc < 4:540491/131‑1 (MQ=255)
ttCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGaa > 3:16337/1‑140 (MQ=255)
gtgtTCAGGTCTACAACCCCGCCTTCTACTTTCGCCTGGGCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTCCGAGAAGTGACGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACcg < 7:221799/138‑1 (MQ=255)
cAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTa > 5:995357/1‑140 (MQ=255)
caacaCCGCCTTCTACTTTAGCGAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCg > 2:216790/1‑140 (MQ=255)
caacaCCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCAccc > 3:742671/1‑139 (MQ=255)
cacCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCa > 1:624419/1‑140 (MQ=255)
ccGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGa > 6:28381/1‑140 (MQ=255)
cgactacTACATTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTATACGAGAAGTGACGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACAACACTCGAAACCGCGACCTACGCCACCGCCAGaa > 4:344922/7‑140 (MQ=255)
cGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTCCGCCACCGCCAGaa > 6:561415/1‑140 (MQ=255)
cGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGaa > 6:511911/1‑140 (MQ=255)
gCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGa > 7:757743/1‑138 (MQ=255)
ccTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATAGCTGCTTTACGATAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCCCCCTCGAAACCGCGACGTACGCCACCGCCAGaa > 8:275783/1‑138 (MQ=255)
tttCAACTTTTGCCTGGTCAGACAGCCTAACTTCGGATTTAATCGCTGCTTAACGAGAAGTCAAGCCGAATTTCGGCTGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAAc < 7:472908/137‑1 (MQ=255)
ctgcTACTTTCGCACGGTCAGACTTACGACTTTCGGCTGTAAGCGCTGCTTACCGTCAAGTTAAGCGTATTTTGGGCTGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACga < 3:791146/137‑1 (MQ=255)
tAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGa > 6:840631/1‑140 (MQ=255)
ccAGGTCAGACAGACGAACTTCGGCTTTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTAGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCCCGACGTCCGCCACCGCCAGAACGAGATTTCTGACCt > 5:430681/1‑140 (MQ=255)
ccAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCCCCGCCAGAAAGAGATTTCTGACCt > 6:328656/1‑140 (MQ=255)
ccAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCt > 3:858724/1‑140 (MQ=255)
ccAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACAGCGACGTACGCCACCGCCAGAACGAGATTTCTGAc > 8:566581/1‑138 (MQ=255)
gTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTtgt > 3:1069760/1‑140 (MQ=255)
cgacatacGAACTTCGGCTGTAATGGCTGCTTAACGAGAAGGGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTgac < 2:365167/139‑1 (MQ=255)
agacagacGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTgac > 3:502803/1‑140 (MQ=255)
acagacGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTgacca > 2:283830/1‑140 (MQ=255)
acagacGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACACTCGAAACCGCGACGTACGCCACCGACAGAACGAGATTTCTGACCTTTGAgacca > 6:57923/1‑140 (MQ=255)
acGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGCCGAACGCCACCGCCAGAACGAGATTTCTGACCTTTGTgaccacgac > 4:640272/1‑140 (MQ=255)
acGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTgaccacgac > 1:418767/1‑140 (MQ=255)
acGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTgaccacgac > 2:136026/1‑140 (MQ=255)
cGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGAGGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTgaccacgacc > 1:798224/1‑140 (MQ=255)
aagttCGGCTGTATTCGGTGCTTTACGCTAAGTGACGCCGATTTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTgaccacgaccac < 1:1065521/137‑1 (MQ=255)
aaCTTCGGCTGTAATCGCTGCTTTACGAGACGTGAAGCCTAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTgaccacgaccac < 1:9959/140‑1 (MQ=255)
aaCTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTgaccacgacc > 8:111559/1‑138 (MQ=255)
gggCTTTAATCGCTGATTTACGAGACGTGAAGCCTAATTTGGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGtt < 3:903441/139‑1 (MQ=255)
tGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGCCCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGtttt > 8:727701/1‑138 (MQ=255)
ttAATCGCTGCTTAAGGAGAAGTTAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTAcc < 6:430731/139‑1 (MQ=255)
ttAATCGCTGCTTAACGCTAAGTTACGCCTAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTAcc < 5:912287/139‑1 (MQ=255)
gtatgcGCTGCTTTCCGACACGTGACCCCTTATTGCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAACCCGCGACGTACGCCACCGCCTGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTAcc < 1:605326/135‑1 (MQ=255)
gTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTAcc < 2:761909/140‑1 (MQ=255)
cGCTGCTTTCCGAGAAGTCACGCCCATTTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGc < 1:974413/140‑1 (MQ=255)
tttACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGCCGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGCAc > 3:219261/1‑140 (MQ=255)
ttACGTGCAGTGAACCCGAATTTCGCCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCATAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGaa < 8:319095/138‑1 (MQ=255)
acgTGAAGCCTAATTTCGGACGACGACGGTACAGAGGCATCTGACCACCCTCGAACCCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGATACCa < 2:1043912/138‑1 (MQ=255)
aaggtatgCCTAATTTCGGCAGACGAAGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGATACCa < 6:28389/133‑1 (MQ=255)
aaGTTAAGCCGAATTTGGCCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGATACCa < 4:738668/140‑1 (MQ=255)
aaGTGAAGCCTAATTTCGGCTGACGACGGTACAGAGGCATCTGACCACACTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGATACCa < 5:135815/140‑1 (MQ=255)
aaGTGAAGCCTAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGATACCa < 4:669713/140‑1 (MQ=255)
aaGTGAAGCCGATTTGCGTCTCACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGATACCa < 2:479650/140‑1 (MQ=255)
aaGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGATACCa < 3:653666/140‑1 (MQ=255)
aaGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGATACCa < 2:792262/140‑1 (MQ=255)
aaGGGAAGCCGAATTACGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGATACCa < 2:426307/140‑1 (MQ=255)
aGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGATACCAc > 3:463556/1‑140 (MQ=255)
aGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACAACCCTCGAAACCGCGCCGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGCGGCCAGAACCGCTACCAc > 4:399838/1‑140 (MQ=255)
tGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCTCCGCCAGCACGAGATTTCTGACCTTTGTGACAACGACCCCCGGTTTTACCGCTGCCAGACACGATACCAc > 7:114183/1‑138 (MQ=255)
tGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACga < 1:655792/80‑1 (MQ=255)
aGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCCCGAAACCGCGACGTACGCCACCGCCAGAACga < 4:880413/77‑1 (MQ=255)
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CTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGATACCACGAC > NZ_CP022686/2184194‑2184463
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
