Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F13 I0 R1
|
230 |
5035.0 |
9125430 |
98.4% |
8979423 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,357,324 |
A→C |
16.3% |
N37T (AAC→ACC) |
dcrB → |
phage sensitivity protein DcrB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,357,324 | 0 | A | C | 16.3%
| 336.3
/ 22.3
| 203 | N37T (AAC→ACC) | dcrB | phage sensitivity protein DcrB |
| Reads supporting (aligned to +/- strand): ref base A (104/62); new base C (2/34); total (106/97) |
| Fisher's exact test for biased strand distribution p-value = 6.69e-11 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 203 total aligned reads displayed.
CGTTTATCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAGGGCAGAA > NZ_CP022686/2357192‑2357459
|
ggTTTATCGAATGTAAGAAGGCAAGGGGCAATCTGGTTAAATATGTCGTATTTGGCCTGGGGGTTAGGGGGATGGCGGCCTGGGATGATAAAGACACAACCGCTAGGGCGCTGGGTTGGGGCGCAGAAAGTAACGCGAcc < 6:742759/139‑1 (MQ=255)
gTTTATCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTACCGCGACCg > 6:819483/1‑140 (MQ=255)
gTTTATCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCATGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCg > 2:87723/1‑140 (MQ=255)
ttATCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCGGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCTGTCGCAGAAAGTAACGCGACCggg > 3:847875/1‑140 (MQ=255)
tATCGAAAGGAAGAAGGCAATGCGCAATCTGGGTAAATATGTCGGAATTGGCCGGCTGGTTATGGGGCGTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCTGAAAGTAACGCGACCGGGa > 4:410746/1‑140 (MQ=255)
aTCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCggg > 7:771476/1‑138 (MQ=255)
gAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATcc > 4:1029118/1‑140 (MQ=255)
agaagTCAATGCGCAATCTTGTTAAATATGGCGGAATTGGCCTGCTGGTTATGGGGCTGGGGGCCTGTGATGAAAACGACACTAACGATATGGCGCCGGGGTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCa < 8:610214/138‑1 (MQ=255)
tCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGTGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCt > 4:360235/1‑140 (MQ=255)
aTGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCtt > 7:302740/1‑138 (MQ=255)
tGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGTCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTAGCAGAAAGTAACGCGACCTGGAATCCCGTCAACCTGCTTGAt > 5:787597/1‑140 (MQ=255)
tGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGAt > 2:1023395/1‑140 (MQ=255)
ggcgaAATGTGGTTAATTATGTGGTAAGGGGCCTGCGGTGTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTAGGGCGCCGGGTGCGGTCGCAGAAAGTACCGCGACCGGGAATCCCGTCAACCCGCTTGAt < 2:120170/139‑1 (MQ=255)
cgcAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGAt > 8:262743/1‑138 (MQ=255)
gcAATCGGTTTAATTATGGCGGATTGGGCGTGCTGTTTTTGGGGCGTGCTGCCTGTGACTATAAATAACATAACGTTTTGGCGCTGTGTTCGGTCGTATAATTTAACGCGACAGGGAATCCCGTCAACCTGCTTGATGGc < 6:25424/140‑1 (MQ=255)
atatGTCGTATTTGGCCTGCTGGTTTTGGGGCTTGCGGCCTGTGATTATAAAGACACTACCGCTATGGCGCAGGGTTCGGTCGCATAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTtct < 1:551242/140‑1 (MQ=255)
tCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTg > 2:327894/1‑140 (MQ=255)
ggAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGGTGGCAAGTTAAGTTTCTCGCTg > 7:270210/1‑138 (MQ=255)
gAATTGGCCTGCTGTTTATGGGGCTGGCGGCGTGTTATGATAAACACACAAACGCTATGGCGCTGGGTGCGGTCGCACAACTTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCa < 3:541724/140‑1 (MQ=255)
gAATGGGCCTGCTGGTTATGGGGCTGGCGGCCGGTGATCATAAAGACACTACCGCTATGGCGCAGGGTGCGGGCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGc < 8:836159/138‑1 (MQ=255)
caaTTGGCGTGTTGTTTAGGTGGTGTGCGGCCTGTGATTATAACGACACTAACGCTATGGCGCAGGGTGCGGTCGCATAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGc < 8:97566/137‑1 (MQ=255)
caaTTGGCCGCCTGGGTATGGGGCTGGCGGCCGGTGCTGAAAAAGACACAAACGCTATGGCGCAGGGTTCGGTCGCAGAAATTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCa < 2:759516/139‑1 (MQ=255)
ggCCTGCTGGTTATGGGGCTTGCGGCGTGTGTTCATAAAGACACTACCGCTTGGGCGCTGGGTGCGGCCGATAAATGAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCg < 7:51463/138‑1 (MQ=255)
ggCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCg < 8:362458/138‑1 (MQ=255)
ggCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGa > 3:506171/1‑140 (MQ=255)
ccgggtgGTTCTGGGGGTTGCGGCCTTTTATGAAAAACACACTAACGCTATGGCGCTGGGGGCGGACGCAGAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGata < 5:489849/135‑1 (MQ=255)
gctgGTTTGGGGGCGTGCGGCCTGTGAGGATAAACACAAAACCGCTATGGCGCAGGGTGCGGTCGCAGAACTTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATga < 4:21718/140‑1 (MQ=255)
gcgggTTATGGGGCTTGGGGCCTGGGATGATAAATACACTAACGCTATGGCGCAGGGTTCGGACGAAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATga < 2:1097659/137‑1 (MQ=255)
ttATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGAGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATgaccg < 7:741648/138‑1 (MQ=255)
ttATGGGGCTGGGGGCCGGTGATGATAAAGACAGAACCGCTATGGCGCTGGGTTCGTTGGCCGTATGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATgaccgac < 2:234058/140‑1 (MQ=255)
ttATGGGGCTGGCGGCCTGTGATGATAATGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATgaccgac < 2:219933/140‑1 (MQ=255)
ttGGGGCTGGCGGCCTTTTATGATAAAGACACTACCGCTATGGCGCTGGGTTCGGTCCCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCa < 1:1051683/139‑1 (MQ=255)
ttGGGGCTGGCGGCCGGTGATGATAAAGACCAAAACGCTCTGGCGCTGGGTGCGGGCGCAGAAATTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCa < 5:105675/139‑1 (MQ=255)
ggggggCTGCCGGCCTGTGATTATAAAGCCACAACCGCTAGGGCGCTGGGGGGGGGCCCAGACCGAACCGCGACCGGGAATCCCGGCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCa < 5:280047/138‑1 (MQ=255)
aTGGGGCTTGCGGCCTGTGATTATAAACACACTACCGCTAGGGCGAAGGGTTGGTTCGCAGAAATTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGTCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCa < 2:953013/140‑1 (MQ=255)
ggCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGCCCAGAGc > 6:592268/1‑140 (MQ=255)
ggCTTGCGGACTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACGTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATTTGACAGACCTGAGc > 4:1013059/1‑140 (MQ=255)
cTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGc > 8:704531/1‑138 (MQ=255)
ttGCGGCCTGTGATTATAAAGACACTACCGCTATGGCGCTGGGTTCGGTCGCAGAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGt < 4:458797/140‑1 (MQ=255)
ttGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCACCCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGt > 3:212917/1‑140 (MQ=255)
ttGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGt > 3:403045/1‑140 (MQ=255)
gggCGGCTTGTTATCATAAACACAATAACGATAGGGCGCTGGGTTCGGCCGCATAAAGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGt < 5:3105/138‑1 (MQ=255)
tGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGCCCAGAGCggaa > 5:942929/1‑138 (MQ=255)
tGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGCCCAGAGCGGTa > 2:194927/1‑140 (MQ=255)
tGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTa > 3:908213/1‑140 (MQ=255)
tGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTa > 4:128577/1‑140 (MQ=255)
tGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTa > 3:64899/1‑140 (MQ=255)
tGCGGACTGTGATGATAAAGAAACTAACGCTATGGCGCAGGGTTCGGTCGAAGAAATTAACGCGAACGGGAATCCCGTCAAGCTTCTTGATGGCAAGTTAAGTTTCTCGCTTCAAGCGGATATGACCGACAAGAGCGGTa > 4:647862/1‑140 (MQ=255)
gCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGt > 7:652048/1‑138 (MQ=255)
cTGTTATTATAAACAAACTAACGCTATGGCGCAGGGTTCGGTCGAAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTgg < 4:730576/140‑1 (MQ=255)
tgatgaTAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGaa > 4:524762/1‑140 (MQ=255)
tgatgaTAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGaa > 2:38740/1‑140 (MQ=255)
ttcaaaaaCACACTAACGCTATGGCGCAGGGTGCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACg < 2:1080192/135‑1 (MQ=255)
attatAACGACACTACCGCTATGGCGCAGGGGTCGGTCCCAGAAATTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACg < 6:33276/137‑1 (MQ=255)
attaaaaaGCCCCTACCGCTATGGCGCCGGGTGCGGGCGCAGAAAGAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACg < 4:355609/135‑1 (MQ=255)
atgaaAAAGACAATAACGCTATGGCGCAGGGTTCGGGCGCAGAACGAACCGCGACCGGGAATCCCGGCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACg < 6:188174/140‑1 (MQ=255)
aaaGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAg > 7:888569/1‑138 (MQ=255)
aaaCACACAAACGCTATGGCGCCGGGTTCGGGCGCAGAAAGACACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGc < 6:49152/140‑1 (MQ=255)
aacacacTACCGCAAGGGCGCAGGGGGGGGGCCCATAAACAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGcc < 1:378279/137‑1 (MQ=255)
aaGACACTCACTCAAGGCCGCCGGGGTCGGGCGCCTAACGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGcc < 6:918314/140‑1 (MQ=255)
aaGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGcc > 4:795373/1‑140 (MQ=255)
gACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCaa > 1:1072259/1‑140 (MQ=255)
cacaAACTCTTTGGCGCTGGTTTCGGTCCCAGAATTAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCATTa < 5:574835/140‑1 (MQ=255)
cacTAACGCTATGGCGCTGGGGTCGGGCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATa < 6:829312/140‑1 (MQ=255)
cacTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATa < 2:342747/140‑1 (MQ=255)
cacTAACGCTATGGCGCAGGGTTCGGCCGCAGAATGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATa < 1:745249/140‑1 (MQ=255)
attactgCTATGGCCCAGTGTCCGGCGGCTCTAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATaa < 2:466669/134‑1 (MQ=255)
tAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTCCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAca > 5:871492/1‑140 (MQ=255)
accGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcat > 6:233800/3‑140 (MQ=255)
acacTATGCCGCAGGGGTCGGGCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcatg < 4:863171/137‑1 (MQ=255)
aCGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGc < 7:991992/87‑1 (MQ=255)
aCGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcatg > 4:290304/1‑140 (MQ=255)
cGCTATGCCGCTGGGTGCGGCCGCACACACAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcatgc < 5:405999/140‑1 (MQ=255)
tATGGCGCTGGGTTGGGTCGCTTAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcatgcatg < 6:963810/140‑1 (MQ=255)
tATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCAAATAAcatgcatg > 3:533166/1‑140 (MQ=255)
tGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGCCCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACAAGCATGTc > 6:443798/1‑140 (MQ=255)
tGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTc > 5:971183/1‑140 (MQ=255)
tGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTc > 3:6859/1‑140 (MQ=255)
tGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCAGCTTGAAGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTc > 3:1152539/1‑140 (MQ=255)
cgcTGGGTGCGGGCGCATAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTgg < 3:728014/140‑1 (MQ=255)
aGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAGCGCAGGCCAATAACATGCATGTCTGGTcc > 3:447807/1‑140 (MQ=255)
gggTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTAGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGCCCAGAGCGGTAAGATGGGAACGCAGGCCAATAACATGCATGTCTGGta > 7:1030228/1‑137 (MQ=255)
gttgcGGACGCACAAATTAACGCGACAGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTTGGAACGCAGGCAAATAACATGCATGTCTGGTCCGa < 1:1160034/136‑1 (MQ=255)
ggTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGa > 1:767820/1‑140 (MQ=255)
gggccaaGAAATTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCca < 3:1029118/134‑1 (MQ=255)
ggTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGCGCGGTAAGCTGGGAACGCAGGCCAAGAACATGCATGACTGGTCCGACGccc > 6:1083962/1‑139 (MQ=255)
ggTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGACCGCAGGCCAATAACATGCATGTCTGGTCCGACGccc > 5:333345/1‑139 (MQ=255)
ggTCCCATAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCTAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCca < 5:422456/140‑1 (MQ=255)
gactcataaaGAAACGCGACCGTGAATCCCGTCAACCTGCGTGATGGCAAGTTAAGTTTCTAGCTGCCAGCGGATATGAACGAACAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCcac < 3:277316/133‑1 (MQ=255)
gTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCcac < 1:219375/140‑1 (MQ=255)
tCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCcaca < 4:506171/140‑1 (MQ=255)
gcgaataaaGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTATGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCcaca < 2:548430/134‑1 (MQ=255)
ccGCAGAAATTAACGCGACGGGGAATCCCGTCAAACTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCca < 7:622998/137‑1 (MQ=255)
cAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAggg > 3:824700/1‑140 (MQ=255)
cAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAggg > 3:375326/1‑140 (MQ=255)
cgAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAGGGc < 2:631493/139‑1 (MQ=255)
gAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAggg > 7:147117/1‑138 (MQ=255)
gAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAGCGCa > 1:665634/1‑140 (MQ=255)
aaaGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAGGGCAg < 1:14116/140‑1 (MQ=255)
aGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAGGGCAGaa < 2:915733/140‑1 (MQ=255)
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CGTTTATCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAGGGCAGAA > NZ_CP022686/2357192‑2357459
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
