Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F36 I0 R1
|
107 |
8366.7 |
6299831 |
98.3% |
6192733 |
135.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,357,324 |
A→C |
20.1% |
N37T (AAC→ACC) |
dcrB → |
phage sensitivity protein DcrB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,357,324 | 0 | A | C | 20.1%
| 211.4
/ 14.5
| 137 | N37T (AAC→ACC) | dcrB | phage sensitivity protein DcrB |
| Reads supporting (aligned to +/- strand): ref base A (68/38); new base C (3/28); total (71/66) |
| Fisher's exact test for biased strand distribution p-value = 6.77e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 138 total aligned reads displayed.
GGCCGTTTATCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAGGGCAGAAAG > NZ_CP022686/2357189‑2357461
|
ggCCGTTTATCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTTATGATAAAGACACTACCGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAAcg > 2:314861/1‑138 (MQ=255)
ggCCGTTTATCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGCTGATAAAGACACTAACGCTATGGCGCAGGGTTAGGTAGCAGAAAGTAAcg > 3:214891/1‑138 (MQ=255)
ggCCGTTAATCGAAAGGAACAAGTCAATGCGCAATCGGGTTAAATATGTCGGAATTGCCCTGCGGGTTTGGGGGCTTGCGCCCTGTGATGATAACCACCATAACGCTATGGCGCAGGGTTCGTTCGCACAAAGTAAcgcg < 8:256699/140‑1 (MQ=255)
ttATCGAAAGGAAGAAGTCAATGCGCAATATGGTTAAATATGTCGGAATTGGCCTTCTGGTTATGGGTCTTGCGGCCTGTGAAGAAAAAGACACTAACGCTAAGGCGCAGGGTTCGGTCGCAGAAAGTAAAGCGACCggg > 5:204074/1‑140 (MQ=255)
tCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGa > 4:453452/1‑138 (MQ=255)
tCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCAGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGa > 1:135257/1‑138 (MQ=255)
aaaGGAAGAAGTCAATGCGCAATCTGGATAAATATGTCGGAATAGGCCTGCTGGTTATGGGGCTTGCGGACTGTGATGATAAAGACACTAAAGCAATTGCGCAGGGTTCGGTCGCAGAAACTAACCCGACCGGGAAAccc > 7:332476/1‑140 (MQ=255)
aGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGt > 6:199157/1‑140 (MQ=255)
caacaagTCAATGCCCAATCTTGTTAAATATGGCGTAATTGGCCTGCTGGTTAGGGGGCTTGCGGCCTGTGATTAAAAACACACTAACGCTATGGCGCTGGGTTCGGGCGCATAAAGTACCGCGACCGGGAATCCCGTCa < 8:68116/136‑1 (MQ=255)
agaagTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTGACGCGACCGGGAATCCCGTCAAc > 7:207153/1‑140 (MQ=255)
taagTCAATGCGCATTGTGGTTAAATAGGTCGGAATGGGCGTGGTGGTTAGGGGGCTGGCGGCCGGTTATTATAACGACACTAACGCTATGGCGCAGGGTTCGGGCGCAGAAAGAAACGCGACCGGGAATCCCGTCaa < 2:751935/137‑1 (MQ=255)
gcAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGc > 6:543734/1‑140 (MQ=255)
gaaaTCTGTTTAAATATGTCTTATTTGGCCTGTTGCTTTTGGGCATGGCGCCCTGTTATTATAAAGACAATACCGCTATGGGGCTGGGTTCGGTCGAACAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGc < 8:529718/138‑1 (MQ=255)
ccaagatGGTTAAATATGTCGGAATTGGCCTGCGGGTTATGGGGCTTGCGGCCTTTGATCTTAAATACATTAACGAAATGCCGATGGGTTTGGTCGACTAAAGTAACGCGACAGGGAATCCCGTCAACCTTCTTTATg < 4:576665/132‑1 (MQ=255)
cTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCaag > 1:713503/1‑138 (MQ=255)
tAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGAGAGAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCaagttaag > 3:728219/1‑138 (MQ=255)
aaaTATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCaagttaagt > 3:739052/1‑138 (MQ=255)
aggTCGGAATTGGCAGGCGGTTTATGGGGCGTGCGGCCGGTTATTATAACGACACAAACGCTAGGGCGCTGTGTTCGGTCGCAGAAAGAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCg < 8:573191/138‑1 (MQ=255)
tCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTg > 6:329280/1‑140 (MQ=255)
tCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTg > 8:329999/1‑140 (MQ=255)
ggAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTg > 1:246573/1‑138 (MQ=255)
ggAATTGGCCTGCTGGTTATGGGACTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGATTGATGGCAAGTTAAGTTTCTCGCTg > 3:379518/1‑138 (MQ=255)
gAATTGGCCTGCTGGTTATGGGGCTGGCGGCCTGTGATCATAAACACACTAACGCTAGGGCGCAGGGGTCGGTCGCAGAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCa < 8:559077/140‑1 (MQ=255)
gAATTGGCCTGCGGGTTAGGGGGGTTGCGGCCTGTGATGATAAAGACCCTAAGCCTATGGCGCTGGGTTCGGGCGCAGAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTAGATGGCAAGTTAAGTTTCTCGCTGCCa < 6:40679/140‑1 (MQ=255)
gAATCGGCCGGCGGGTTATGGGGCATGCTGCCGGAGAGGTTACACCCACAAACGCTTTCGCGCTGGGTCCGGGCGCAGAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGc < 4:332020/138‑1 (MQ=255)
caaTTGCCCTGCTGGTTATGGGGCTTGGGGCCGGTTATGATAACGACACTACCGCTTTGGCGCAGGGGTCGGTCGCAGAACGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCa < 5:199157/139‑1 (MQ=255)
aattgggCCTGCGGGTTAGGGGGCTGGCGGCCGGGGATGATAACCCCACAACCGCTAGGGCGCCGGGGGCGGGCCCACAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGc < 3:650989/133‑1 (MQ=255)
catgctgGTTATGGGGGTTCCGGCCTGTGATTTTAAACACAATAACGCTATGGGTCAGGGTGCGGCCCTTTAAATTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGata < 8:54831/138‑1 (MQ=255)
gttgtttATGGGGCTTGCGGCGTGTTATTATAAAGACAATAACGCTTTGGCGCAGGGTTCGGTCGCATAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATga < 7:246865/135‑1 (MQ=255)
gctgGTTATGGGACTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGATTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGatat < 4:379517/138‑1 (MQ=255)
gctgGTTAGGGGGCTGGCGGCCTGTTATGATAACTACCCTAACGCTCTGGCGCTGGGGTCGGGCGCAGAATGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGatat < 3:368725/138‑1 (MQ=255)
gcgggTTATGGGGCGTGCGGCCTGTGATTATAAAGACACTAACGCTATGGCGCTGGGTTCGGTCGCAGAAAGAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGatat < 1:435140/135‑1 (MQ=255)
ggtttttGGGGCGTGCGGCCTGTGATGATAAACACACTAACGCTTTGGCGCCGGGTTCGGTCGACGAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATga < 3:218730/132‑1 (MQ=255)
gggTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGGCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATgacc < 7:505380/139‑1 (MQ=255)
ttATGGGGCTTGCGTCTTGTTATTATAAATACATTAAGTGTTTGGCGGTGGGTTGGGTCCCAGAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATgaccgac < 7:382353/140‑1 (MQ=255)
ttGGGGGTGGCGGCCGGTGATTATAATGACACTACCCATTTGGCGCTGGGTGCGGTGGAAGAACGTTCCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCa < 5:402644/139‑1 (MQ=255)
agggggATTGCGGCCTGTGATGATAAAGCAACAAACGCTATGGCGCAGGTTTCGGTCGAAGAAAGTAACGCGACAGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATgaccgac < 4:376406/136‑1 (MQ=255)
ggggCTTGCGGCCTTTGATGATAAAGACACTAACGCTATGGCGCATGGTTCGGTCGCAGAAATTAACGCGCCCGGGAATCCCGGAAACCTGCTTGATGGCAAGTTAAGTTTCTCTCTGCCAGCGGATATtaccgaccc > 4:446733/1‑137 (MQ=255)
gggCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCagag > 5:631171/1‑140 (MQ=255)
ggcggccGGCCGGTGATTAACACGCCACAAACGCTAGTGCGCTGGGGGCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTGGCTGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGc < 8:690336/134‑1 (MQ=255)
ggCTTGCGTCCTGTGATGATAAACCAACTAACGCAATGGGGCTGGGTGCGTGCCCATAAAGTCACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCaga < 2:818379/138‑1 (MQ=255)
ctggCGGCCTGTTATGATAACCACACTAACGCTATGGCGCAGGGGTGGGTCGAATAACGAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCgg < 6:167092/137‑1 (MQ=255)
ttGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGt > 8:267658/1‑140 (MQ=255)
ttGCGGCCGGTGAGTATAAAGACACTACCGCTATGGCGCCGGGTTCGGTCGCCTAAAGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCg < 2:419121/138‑1 (MQ=255)
gCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGt > 3:536147/1‑138 (MQ=255)
gCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGt > 2:43042/1‑138 (MQ=255)
gCGGCCTGTGAGGATAAAGACACTAACGATTTGGCGCAGGGTTCGGTCGCATAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTaa < 6:534456/140‑1 (MQ=255)
gCGGCCGGTTATTAAAAACACACTACCGATAGGGGGCTGGGGGCGGTCTCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGCTGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTaa < 7:296383/140‑1 (MQ=255)
cGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAg > 6:359216/1‑140 (MQ=255)
cGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGCGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCTGAAATGACCGACCAGAGCGGTa > 2:770680/1‑138 (MQ=255)
gtgttATGAAAAAGACAATAACGCTATGGCGCTGGGTGCGGCCGCAGAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCt < 4:793722/137‑1 (MQ=255)
tgatgaTAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCACCCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGCCCAGCGCGGTAAGCTggg > 2:573685/1‑138 (MQ=255)
tgatgaTAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGc < 4:582717/104‑1 (MQ=255)
tttatAAAGACACAAACGCTATGGCGCAGGGTGCGGTCCCATAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGaa < 1:565090/135‑1 (MQ=255)
tgtatAAACACACTAACGCTATGGCGCAGGGTTCGGGCGCATAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGaa < 2:342510/135‑1 (MQ=255)
atgagAAATACAAAAACGCTAGGCCGCGGGTCGGGGTCGCAGAAAGACACGCGACCGGGAATCCCGTAAACCTGCTTGATGGCAAGTTAAGTTTCTCGATGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGaa < 3:294246/138‑1 (MQ=255)
atcatAAAGACACAACCGCTTTGGCGCTGGGGGCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGaa < 1:717251/135‑1 (MQ=255)
aagatAAAGCAACAAACGCTCTGGCCCAGGGTTCGGCCGCACAAAGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGaa < 1:279777/136‑1 (MQ=255)
tcaaaaGACACAACCGCTAGGGCGCCGGGTCCGGTCGCAGAAAGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACg < 1:55346/135‑1 (MQ=255)
tataaccacacTAACGCTATGGCGCTGGGTTCGGGCGCATAAAGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCa < 7:581238/133‑1 (MQ=255)
atAAAGAAACTACGGATTTGGCTCCGGGTTCGGTCGCAAAAATAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTT‑‑TCGCTGCCAGCGGATATGACCTACCAGAGCGGTAAGCTGGGAACGCAGGc < 8:284297/140‑1 (MQ=255)
tAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAgg > 6:748630/1‑140 (MQ=255)
tAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAgg > 6:49987/1‑140 (MQ=255)
tAAAGACACTAACGCTATGGCGAAGGGTTCTGTCGCAGAAAGTAACGCGACCGGGAATCCAGTCAACCTGCTTGATGTCAAGTTAAGTTTCTCGCTGCAAGCTGATATGAAAGACCATAGCGGTAAGCTGTTAAAGCAgg > 8:259453/1‑140 (MQ=255)
aaaGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAg > 4:51933/1‑138 (MQ=255)
gACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCaa > 6:470030/1‑140 (MQ=255)
ccctcaCGCTATGGCGCAGGGTGCGGTCGCACAACGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCaa < 1:792731/133‑1 (MQ=255)
cacTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGCATCCCGTCAACCTGGTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGAAATGCCCGACCAGAGCGGTCAGCTGGGGACGCAGGccca > 1:115320/1‑136 (MQ=255)
ccgcttgggCGCTGGGTGCGGGCGCAGAAAGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGCCCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcatg < 7:482914/133‑1 (MQ=255)
ccgcaagggCGCAGGGTTCGGGCGCAGAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcatg < 5:354723/133‑1 (MQ=255)
aCGCTCTGGCGCCGGGTTCGGGCTCATAATTTACCGCGACCGGGAATCCCGTCAACATGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcatg < 5:708398/140‑1 (MQ=255)
aCGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTAGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAca > 3:459435/1‑138 (MQ=255)
cgatATGGCGCAGGGTTTGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcatgc < 6:63949/137‑1 (MQ=255)
cccTATGGCCCTGGGTTCGTGCCCATAACTAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACTGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcatgc < 5:11627/138‑1 (MQ=255)
gCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcatg > 4:540361/1‑138 (MQ=255)
tGGCGCAGGGTTCGGTCGCAGAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTc > 5:229239/1‑140 (MQ=255)
tGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGAGGAGATGACCGACCAGAGCGGTACGCTGGGAACGCAGGCCAATAACATGCATGTc > 6:708398/1‑140 (MQ=255)
gcgcAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTc > 1:633288/1‑138 (MQ=255)
gcgcAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTc > 3:464819/1‑138 (MQ=255)
gcgcAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTc > 1:222231/1‑138 (MQ=255)
cgatggtttCGGTCACAGAACTACACGCGACCGGTAATCCCGTCAACCTGATTTAGGGCAAGTTAAGTTTCTCGCTGCCAGAGGATATGACCTACCAGAGCGGTAAGCTGGTAACGCAGGCCAATAACATGCATGTCTgg < 6:498717/133‑1 (MQ=255)
cAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTc > 5:754026/1‑140 (MQ=255)
gggTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTc > 4:772500/1‑138 (MQ=255)
gggTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTc > 2:289634/1‑138 (MQ=255)
ggTTGGGGCGCAGAAATTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTcc < 1:777249/138‑1 (MQ=255)
ttCGGTCGCAGAAAGTAACGCGCCCGGGAATCCCGTCAACCTGCGTGATGGCAAGTTAAGTTTGTCGCTGCCAGCGGATATGACCGACCAGCGCGGTCAGCTGGGAACGACGGCCAATAACATGAATGTCTGGTacgacg > 5:499372/1‑140 (MQ=255)
ttCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGa > 4:456000/1‑138 (MQ=255)
ttCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGCCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGa > 1:120381/1‑138 (MQ=255)
cGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGcc > 8:375482/1‑140 (MQ=255)
cGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCGGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACg > 2:463607/1‑138 (MQ=255)
cGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATAGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACg > 3:761709/1‑138 (MQ=255)
ggccGCAGAAAGTACCGCGACCGGGAATCCCGTCAACCTGGTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCca < 5:674988/137‑1 (MQ=255)
ggTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCca > 8:613795/1‑140 (MQ=255)
tCGCATAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCca < 2:466060/138‑1 (MQ=255)
tCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGCCCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGccc > 1:556935/1‑137 (MQ=255)
tCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGccc > 1:526664/1‑137 (MQ=255)
gcGCAGAACGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCca < 4:501231/137‑1 (MQ=255)
cAGAAAGTAACGCGACCGGGAATCCCGTCAACCTCCTTGATGGCAAGTTAAGTTTATCGCTGCAAGCGGATATGACAGACCAGAGCTGTAAGATTGGAACGCAGGCCTATAACAGGCATGTCTGGTCCTACGCCACAcgg > 5:704767/1‑140 (MQ=255)
tAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGCCCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAGGGCAGAAAg > 7:484617/1‑140 (MQ=255)
aaaCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTGCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAGGGCAGAAAg < 7:741550/139‑1 (MQ=255)
|
GGCCGTTTATCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAGGGCAGAAAG > NZ_CP022686/2357189‑2357461
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
