Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F2 I0 R1
|
193 |
6708.0 |
8620653 |
98.5% |
8491343 |
136.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,357,324 |
A→C |
18.6% |
N37T (AAC→ACC) |
dcrB → |
phage sensitivity protein DcrB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,357,324 | 0 | A | C | 18.6%
| 229.9
/ 21.0
| 164 | N37T (AAC→ACC) | dcrB | phage sensitivity protein DcrB |
| Reads supporting (aligned to +/- strand): ref base A (81/49); new base C (2/32); total (83/81) |
| Fisher's exact test for biased strand distribution p-value = 8.14e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 165 total aligned reads displayed.
GCCGTTTATCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAGGGCAGAAAGCA > NZ_CP022686/2357190‑2357463
|
gTTTATCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGTTTCGGTCGCAGAAAGTACCGCGAccc > 1:1078114/1‑139 (MQ=255)
ttATCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCggg > 4:1072814/1‑140 (MQ=255)
ttATCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCggg > 4:637790/1‑140 (MQ=255)
agcaataagTCAATGCGCAATCTTGTTAAATATGTCGTAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACCCAACCGCTATGGCGCTGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGt < 6:288650/134‑1 (MQ=255)
agcaagaagTCATGGCGCAATCTGTTAAAATATGTCGAAATTGGCCTGCTGGTTATGGGTCTTGCGGCCTGTTATGAAAAAAACACTAACGATATGGCGCTGGGTTCGGGCGCAGAAAGAAACGCGACCGGGAATCCCGt < 2:923431/137‑1 (MQ=255)
agaagGCAATGCGCAATATGGTAAAATATGGCGGAATTGGCCTGCTGGTTATGGGGCTGGCGGCCTGTGATTAAAACGACACAACCGCTAGGGCGCAGGGTTCGGCCGCAGAAAGTAACGCGACCGGGAATCCCGTCAAc < 8:509499/140‑1 (MQ=255)
tGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGAt > 8:971511/1‑140 (MQ=255)
tGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGAt > 4:376406/1‑140 (MQ=255)
tGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGAt > 4:929910/1‑140 (MQ=255)
tGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGAt > 2:513684/1‑140 (MQ=255)
tGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGAAGGGTTCGGTCGCAGAAAGTAACGCGCCCGGGAATCCCGTCAACCTGCTAGAt > 7:1025000/1‑140 (MQ=255)
ccAATCTGGTAAAATATGTCGTATTGGGCCTGCTGTTTTGGGGGCTGGCGGCGTGTGATTATAAAGACACTAACGCTATGGCGCAGGGTTGGTGCTCATAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGc < 6:932255/139‑1 (MQ=255)
ccAATATGTTTAAATATGTCGGAATTGGCCTGGTGGTTATGGGGCTTGCGGCCTGTGATGATAAATAAACTAACGCTATGCCGCAGGGTGCGGTCGCATAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGc < 4:489977/139‑1 (MQ=255)
tCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCTGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCaagt > 7:371999/1‑140 (MQ=255)
gtGGTTAAATATGTCGGAATTGGCCTGCTGGTTTTGGGGCTTGCGGCCTGTGATGATAAAGACACTACCGCTATGGCGCAGGGTTCGGGCGCAGAAAGAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCaagtt < 1:695641/139‑1 (MQ=255)
ttAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGACTCCCGTCAACCTGCTTGATGGCaagttaagt > 3:970768/1‑140 (MQ=255)
tGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGc > 4:199325/1‑140 (MQ=255)
tCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGCCACTAACGCTATGGCGCAGGGTTCGGTCGCAGCAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATTGCAAGTTAAGTTTCTCGATg > 7:531981/1‑140 (MQ=255)
tCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACCCTAACGCTATGGCGCAGGGTTCGGTCGCAGCAAGTAACGCGCCCGGGAATCCCGTCCACCTGCTTGATGGCACGTTAAGTTTCTCGCTg > 4:790735/1‑140 (MQ=255)
tCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTg > 6:554217/1‑140 (MQ=255)
tCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTg > 1:1032053/1‑140 (MQ=255)
tCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTg > 5:878883/1‑140 (MQ=255)
tCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTg > 7:915920/1‑140 (MQ=255)
tCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGACTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGCCCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTg > 5:170855/1‑140 (MQ=255)
ttttgggCCTGCGGGTTTGGGGGGTGGGGGCGGGTGATCAAAACCACACTACCGCTTTGGCGCTGGGTGCGGTCGAAGAAAGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCa < 3:292935/135‑1 (MQ=255)
taatggcccTGCTGGTTTTGGGGCTTGCGGCCGGTGATTAAAAACACACTACCCATATGGCGCAGGGTGCGGGCGCACAAAGAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCa < 2:275583/133‑1 (MQ=255)
taaTTGGCCTGCTGGTTAGGGGGCTTGCGGCCTGTGATGATAAACACACAAACGCTATGGCGCAGGGTTCGGTCGCACAAAGAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCa < 2:483613/139‑1 (MQ=255)
gacttGGCCTGCTGGTTAGGGGGCTTGCGGCCGGTTAGTATAAAGACACTAACCCTATGGCGCTGGGTTGGGTCGCAGAAATTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCa < 8:594508/137‑1 (MQ=255)
gAATTGGCCTGCTGTTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCa < 2:53769/140‑1 (MQ=255)
gCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGCCCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGat > 2:787509/1‑140 (MQ=255)
gCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGat > 7:954208/1‑140 (MQ=255)
gctgGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCTGGGTTCGGTCGCAGAAAGAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATga < 6:724478/140‑1 (MQ=255)
gctgGTTATGGGGCTTGCGGCCGGTTATGATAAAGAAACTAACGCTAGGGCGCCGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATga < 8:281843/140‑1 (MQ=255)
ttttGGGGTTTGCGTCCTTTTATTATAAATACACTATCGCTTTGGCTCAGGTGTGGGTCGCTGAAAGTAACTCGACCGTGAATCCCGTCTACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATgaccgac < 6:48930/137‑1 (MQ=255)
tttgggggATTGCGCACTGTTATGATAAATAAAATAAGGCTATGGCGATGGGTTCGGGCCCATAAATTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATgaccgac < 4:186412/136‑1 (MQ=255)
taggggcCTTGCGGCCTGTGATTATAAACACACTCACGCTATGGCGCAGGTTGCGGCCGCATAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATgaccgacc < 8:365326/137‑1 (MQ=255)
gggCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCagag > 4:1000106/1‑140 (MQ=255)
ggCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGTGGATATGACCGACCAGAGc > 6:371879/1‑140 (MQ=255)
ttGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGt > 4:587698/1‑140 (MQ=255)
ttGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGt > 2:166403/1‑140 (MQ=255)
ttGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGAGGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGt > 3:994085/1‑140 (MQ=255)
ttGCGGACTGTGATGATAAAGACACTAACGCTATGGCGCAGGTTTCGGTCGCAGAAAGTAACGCGACCGTTAATCACGTCAACATGCTTCATGGCAAGTTAAGTTTCTCGCTGCAAGCGGATATGACCGACCAGAGCGGt > 2:788784/1‑140 (MQ=255)
tggCGGCCTGTGATGATAAACACACTAACGTTATGGCGCAGGGTTCGGGCGCATAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGt < 4:646840/138‑1 (MQ=255)
tggCGGCCGTTGATGATAAAGACACTACCGATTTGGCGCAGGGTGCGGGCGCACAACTAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGt < 3:1072815/138‑1 (MQ=255)
gtGCGGCCTGTGATGTTAAAGACACTAACGCTATGGCGCAGGTTTCGGTCGCAGAAAGTAACGCGCCCGGGAATCCCGTCAACCAGCTTGATGGCAAGTTTAGTTTCTCGCTTCCAGCTGATATGACCGCCCAGAGCgtg > 4:873625/2‑138 (MQ=255)
tGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCACCCTGCTAGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTa > 7:295994/1‑140 (MQ=255)
gtgtgATTATAAACACAATACCGATTGGGCGCTGGGGTGGGCCGCTGAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTgg < 4:729349/139‑1 (MQ=255)
cTGTGATTATAACCACACTAACGCTATGGCGCCGGGTTCGGGCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTgg < 7:796560/140‑1 (MQ=255)
tgtgATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTggg > 2:702151/1‑140 (MQ=255)
ttgatAACGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACg < 2:655372/139‑1 (MQ=255)
attatAAACACACAACCGCTATGCCGCCGGGCGGGGGCGCAGAAAGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACg < 8:549650/137‑1 (MQ=255)
attaaaaaCACAATACCGCTATGGCGCAGGGTTCGGGCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACg < 6:365767/135‑1 (MQ=255)
atAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAg > 2:879656/1‑140 (MQ=255)
aaccacacTACCGCTATGGCGCAGGGTTGGGGCGCAGAAAGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGc < 3:589729/136‑1 (MQ=255)
acgccccTACCGCTATGGCGCAGGGCGCGGGCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGcc < 8:828519/134‑1 (MQ=255)
aacccaatAACCCTAGGGCGCCGGGTTCGGGCCCAGAAAGAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGcc < 2:245819/133‑1 (MQ=255)
aacacacTACCCGTATGGCGCTGGGGGCGGGCGCCCAAAGCACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGcc < 6:364565/137‑1 (MQ=255)
aacacacAAACGATTTGGCGCTGGGTTCCGGCTCATAAAGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGcc < 3:291771/137‑1 (MQ=255)
aacacaaTAACGCTATGGCTCAGGGGTCGTTCGGCGATAGAAACGAGACCGGGAATCCCGTCAACCTGATTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGTATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGcc < 1:948107/137‑1 (MQ=255)
aaGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGcc > 8:40486/1‑140 (MQ=255)
gACAATACCGCAATGGCGCAGGGTCCGGTCGCAGAAAGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCaa < 6:497238/140‑1 (MQ=255)
cacacTAACGCTTTGGCGCCGTGTTGGGGCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCaa < 7:85584/139‑1 (MQ=255)
acaaTACCGCTTTGGCGCCGGGTGCGGCCGCATAAAGACCCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAAt < 4:1080444/140‑1 (MQ=255)
cccaaccGCTCTGGCGCTGGGTGCGGGCGAAAACAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATa < 1:883530/134‑1 (MQ=255)
acTACCGCTTTGGCGCTGGGGTCGGCCGCATAATCAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGCGCGGTAAGCTGGGAACGCAGGCCAATaa < 1:1117127/140‑1 (MQ=255)
acTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATaa > 3:594241/1‑140 (MQ=255)
tAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAca > 3:368291/1‑140 (MQ=255)
ccgctcgggCGCCGGGTTCGGTCGATGAATGAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcatg < 6:558902/133‑1 (MQ=255)
ccgatcgggCGCCGGGTCGGGCCGCACAAAGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcatg < 1:537253/133‑1 (MQ=255)
ccgatagggCGCTGGGTTCGGTCGAATAATGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcatg < 5:367962/133‑1 (MQ=255)
ccGCTATGGCGCTGGGTTGGGTCCAATAAAGAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcatg < 3:525872/139‑1 (MQ=255)
ccGCTATGGCCCCGGGTGCGGTCCCAGAAAGAACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATATcatg < 7:1003092/139‑1 (MQ=255)
ccGCTAGGGCGCTGGGTTGGGTCGCAGAATGAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcatg < 4:51857/139‑1 (MQ=255)
aCGCTTTGGCCANGGGTGCGGGCCAANAATGANCCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAANTTTCTCGCTGCCAGCGGATATTCCCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcatg < 7:719885/140‑1 (MQ=255)
aCGCTAGGGCGCCGGGGTCGGGCGCAGAAAGAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAAcatg < 1:1041523/140‑1 (MQ=255)
tATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGCCCGACCAGAGCGGTAAGATGGGAACGCAGGCCAATAAcatgcatg > 5:180563/1‑140 (MQ=255)
tGGCGCAGGGTTCGGTCGCAGAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTc > 8:880373/1‑140 (MQ=255)
tGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGACCGCAGGCCTATAACATGCTTGtg > 1:490708/1‑139 (MQ=255)
tGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTc > 1:414611/1‑140 (MQ=255)
tGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTc > 1:656276/1‑140 (MQ=255)
ccgcgcGGGGTGCGCCCGCCAAAAGTCACGCGACCGGGATTCCCGTCCACCTGCTTGATGGCAAGTTCAGTTTCTCGCGGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTc < 1:445245/138‑1 (MQ=255)
cAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTc > 5:759221/1‑140 (MQ=255)
cAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTc > 1:719625/1‑140 (MQ=255)
cAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTc > 2:808569/1‑140 (MQ=255)
aGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTcc > 1:514865/1‑140 (MQ=255)
aGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTcc > 2:1098660/1‑140 (MQ=255)
tgTTCGGTCGAAGAAAGTAACGCGACAGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAATTTTCTCGCTGCCCGCGGATATGACCGACCAGAGCGGTACGCTGGGAACGCAGGCCAAGACCATGCCTGTCTGTGCCGa > 8:139584/2‑140 (MQ=255)
gtgtCGGTCGCAGAAAGTACCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGa < 3:495228/137‑1 (MQ=255)
ggTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCACTAACATGCATGTCTGGTCCGa > 8:139587/1‑140 (MQ=255)
ggTTCGGTCGCAGAAAGTAACGCGACACGGATTCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCCTGTCTGGTCCgc > 7:701710/1‑139 (MQ=255)
ggTTCGGTCCCAGAAAGCAACGCGAACGGGAATCCCGTCAACCTGCTATATTGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGAACAGAGCGGTAAGCTGGGAAAGCAGGCCAATAACATGCATGTCTGGTCCGa < 6:5321/140‑1 (MQ=255)
ggTTCGGGCGCAGAAAGAAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGGCTGGTCCGa < 6:624891/140‑1 (MQ=255)
ggTTCGGACGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGa > 8:894784/1‑140 (MQ=255)
ggTCGCAGAAAGTAACGCGCCCGGGAAGCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGCCCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCgccgccc > 4:265181/1‑139 (MQ=255)
ggTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCca > 6:836966/1‑140 (MQ=255)
ggTCGCAGAAAGTAACGCGACCGGGAATCCCGTAAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCca < 2:649923/140‑1 (MQ=255)
cAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAggg > 3:512635/1‑140 (MQ=255)
tttAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAGGGCAGaa < 5:751040/138‑1 (MQ=255)
tAACGCGCCCGGCAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAGGGCAGAAAg > 1:1073496/1‑140 (MQ=255)
aCGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAGGGCAGAAAGCa > 5:769292/1‑140 (MQ=255)
|
GCCGTTTATCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGGAATTGGCCTGCTGGTTATGGGGCTTGCGGCCTGTGATGATAAAGACACTAACGCTATGGCGCAGGGTTCGGTCGCAGAAAGTAACGCGACCGGGAATCCCGTCAACCTGCTTGATGGCAAGTTAAGTTTCTCGCTGCCAGCGGATATGACCGACCAGAGCGGTAAGCTGGGAACGCAGGCCAATAACATGCATGTCTGGTCCGACGCCACAGGGCAGAAAGCA > NZ_CP022686/2357190‑2357463
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
