Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F36 I0 R1
|
179 |
8076.5 |
8499890 |
98.3% |
8355391 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,361,489 |
T→G |
16.8% |
V188G (GTT→GGT) |
nikA → |
nickel ABC transporter substrate‑binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,361,489 | 0 | T | G | 16.8%
| 221.4
/ 16.8
| 158 | V188G (GTT→GGT) | nikA | nickel ABC transporter substrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base T (57/70); new base G (26/3); total (83/75) |
| Fisher's exact test for biased strand distribution p-value = 7.53e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 158 total aligned reads displayed.
CCTGAAAAGCGCCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTACCCGCGCGGTGGCGTTTGAAACTGG > NZ_CP022686/2361355‑2361627
|
acTGAAAAGCGCCTACTATACTTTCCTGCAAGAGCAGGCCCTGCCACCTCCTTTGCGTTTTATCTAACCCACGCAGTTTAAAAACCACGATACCAAGAACGGAATTAAAGCGCCGATTGGCCCCGGCCCGTGGGTTTTAc > 6:628622/2‑140 (MQ=255)
tGAAAAGCGCCTACTATCCTTTCCTGCAAGAACTGGCCCAGCCCCGTCCTTTCCGTTTTATCGCACACTCTCAGTTAAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTaa > 8:229654/1‑137 (MQ=255)
aaaaGCGCCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACAACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACAGGGCCGTGGGGTTTACAg > 7:758334/1‑138 (MQ=255)
aaaGCGCCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCCCCGGGCCGTGGGGTTTTCAGGaa > 1:530675/1‑140 (MQ=255)
aaGCGCCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAAt < 2:101462/140‑1 (MQ=255)
cgcgcCTACTATCCTTTCCTGCAAGAACTGTCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGaa < 7:644309/137‑1 (MQ=255)
aGCGCCTACTATCCATTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCCCCCTCGCAGTTTAAAAACCACTAAACCATTAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGaa < 8:856188/138‑1 (MQ=255)
cgcCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTACAGGAATCGa > 3:1038335/1‑140 (MQ=255)
cttactaTCCTTTCCTGGATGAACTCGCGCTGCCCCGTCATTTCTGATTTTGCGCACCCTGCGAGGTAAAACACCACGAAACCATGAACGGAATTTTAGCGCCGATTGGCACCGGTAAGTGGGGTTTACTGGAATCGata < 2:945341/138‑3 (MQ=255)
ccTACTATCCTTTCCTTCAAGAACTGGCCCAGCCCCGTCCTTTCCGTTTTATCGCACCGTCGCATTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGaa‑a < 3:997697/140‑1 (MQ=255)
ccTACTATCCTTTCCTGCACTAACTGTCCATGCCCCGTCCTTTCCGTTTTATGGCACCCTCGCAGTTTAAAAACCACTAAACCATGAACGGAAGTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATcta < 7:307027/138‑3 (MQ=255)
ccTACTATCCTTTCCTGCAATAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGTAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGa < 7:130400/138‑1 (MQ=255)
ccTACTATCCTTTCCTGAAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGAACCCTCGCAGTTTAACAACCACGACACATTGAACTGAATTCACGCGCCGATTGTCACCGGGCCGTGGGTTTTACTGGAATCGaa‑a < 2:518753/140‑1 (MQ=255)
ctactaTCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGATTTATCGCACCCTCGCATTTTAAAAACCACGAAACCATTAACGGAATAAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑Ac < 5:641439/140‑1 (MQ=255)
actaTCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTg > 4:382586/1‑140 (MQ=255)
atacTTTCCTGCAAGCACCGGCCCTGCCCCGTCCTTTCCGTTTTATCGAACCCTCGCAGTATAAAAAACACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAAt < 3:251876/137‑1 (MQ=255)
aTCCTTTCCTGCAACAACTGGCCCTCCCCCGTCCTTTCCGTTTTATCCCACCCTCGCAGTTTAAAAACCACGAAACAATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAAt < 2:156914/140‑1 (MQ=255)
ttCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGAAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTAGAGGAATCGAA‑ACTGATTAAGTa > 4:732715/1‑140 (MQ=255)
ttCCTGAAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTAATCGAACCATCGAAGTTTAACAACCACGAAACAATGAACGCAATTAACGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTa < 5:323020/140‑1 (MQ=255)
tCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCTCCGATTGTCACCGGGCCGTGGGTGTTAAAGTAATCGAA‑AATGAATCAGTAc > 3:636276/1‑140 (MQ=255)
tCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTaa > 2:254713/1‑139 (MQ=255)
cgtGCAAGAACTGGCCCTGCCCCGTCATTTCCGTTTTATCGCACACTCGCAGTTTAAAAACCACGAAACCATGCACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTa < 8:80612/136‑1 (MQ=255)
cctgacaGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACg < 6:786962/134‑1 (MQ=255)
ccTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGTAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACg < 6:642220/140‑1 (MQ=255)
ccTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACg < 3:494453/140‑1 (MQ=255)
ccTGCAAGAACTGGCCCGTCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAACCAACGAAACCATGCACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTa < 7:227488/138‑1 (MQ=255)
catGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACg < 5:790309/138‑1 (MQ=255)
tGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGATCGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTGTTTCAGGAATCGAA‑AAGGAATCAGGACGAt > 1:271251/1‑140 (MQ=255)
tGCAAGAACTGGCCCTGCCCCGTCCTTTCCGATTTATCGCACCCTCGCAGTTTAAAAACCACGAAAACAAGAACGGAATTAAAGCTCCGATTGGCACCGGGCCGTGGGTTTTAAAGGAATGGAA‑ACTGAATCAGTACGag > 4:142005/1‑139 (MQ=255)
tGCAAGAACTGGCCCTGCCCCGTCCTGTCCGTTTTATCGCCCCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGAt > 3:825223/1‑140 (MQ=255)
cAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTAAAGGAATCGAA‑ACTGAATCATTACGCTGt > 5:625432/1‑140 (MQ=255)
cAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACAATGAACGGAATTAAAGCGCCGATGGGCACCGGGACGTGGCGTTTACATGAATCGAAGACT‑ATTCCGTACGATGt > 6:854450/1‑140 (MQ=255)
aGACCTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTTCAGGAATAGAA‑ACTGAATCAGTACGATGTCt > 1:223988/1‑140 (MQ=255)
aGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGATTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTACATGAATCAAA‑ACAGAAAAAGTACGATGtgt > 5:262085/1‑138 (MQ=255)
aGAACTGGCCCTGCCCCGACCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACAATGAACGGAATTAAAACGCCGATTGGAACCGGGCCGTGGGTTTTACAGGAATAGAT‑ACCGAATCATTACCATga > 8:513593/1‑137 (MQ=255)
tGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCACAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTATTCggc > 4:595098/1‑138 (MQ=255)
gCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGCATCGAA‑ACAGAATCAGTACGATGTCATCGACCg > 6:137024/1‑140 (MQ=255)
gCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCtt > 5:726492/1‑129 (MQ=255)
gCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCtt < 6:726492/129‑1 (MQ=255)
ccccGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTAAATGAAAAGAA‑ACTGAATAAGTAAGATTTATTAGTGCGGAAcca > 3:534487/1‑138 (MQ=255)
cccGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGaa < 5:74878/140‑1 (MQ=255)
cccGGCCTTTCCGTTTTATCGCCCCCTCGCAGTTTAAAAACCACGAAACCTTGTACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑TCTGAATCAGTACGATGGCTTCGTCCGTAACGaa < 1:496457/140‑1 (MQ=255)
gTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTAAAGGAATAGAA‑ACTGAATAAGTAACATGTCTTCGTTCGTAAAGaaaaa > 5:218885/1‑139 (MQ=255)
tCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACAGAATAAGTACGATGTATTCGTCCGTAAAGaaaaaa > 6:95294/1‑138 (MQ=255)
ccTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTTAAGGAATCGAA‑ACTGAATCAGTAAGATGTCTTCGTGCGTTACGaaaaa > 8:47752/1‑137 (MQ=255)
cTTTCCGTTTTATAGCACCCTCGCAGTGTAAAAAACACGAAACCATGAACGGAATAAAAGCGCCGATTCGCCCCGGGCCGTGGGTTTTACATGAATCGAA‑ACAGAATCACTACGAAGTCTTCGTCAGTAACGAACact > 8:475778/1‑138 (MQ=255)
tCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACTAAACCATGAACGTAATTAAATCGCCGATTGGCACCGGGCAGAGGGGTTTACAGGAATCGAA‑ACTGAATAAGTTAGATGTCATCGTACGTTAGGaaaaaaattgg > 6:968348/1‑133 (MQ=255)
tCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTTGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGAAGTCTTCGTCCGTTACGAAAACTCCTgg > 4:205522/1‑140 (MQ=255)
tCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTAAAGGAATAGAA‑ACTGAATCAGTAAGATGTCTTAGTACGGAACGAAAAAAACTgg > 6:113214/1‑140 (MQ=255)
cGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACAGGGCCGTGGGTTTTACAGGAATCGCA‑ACACAAACAGTACGATTTCTTCGTCCGTAAAGCAAAATACTgg > 7:267838/1‑138 (MQ=255)
cGTTTTATCGCACCCTAGCATTTTAAAAACCACGAAAACATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTTCATGAATCGAA‑ACTGAATCAGTACGATGTCTTAGTCAGTAAAGAAAACTACTgg > 8:998271/1‑138 (MQ=255)
tttATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACATGAATCGAA‑ACTGAATCAGTAAGATGTATTCGTCCGTAACGAAAACTACTGGGGCgc > 1:197794/1‑139 (MQ=255)
ttATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGCATCGAA‑ACTGAATAAGTAAGATGTGTTCTGCCGTAACGCAAACGACTGGGGCgta > 1:508077/1‑138 (MQ=255)
tATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTACAGGAATCGAA‑ACTGAATAAGTACGATTTCTTCGTACGGAACGAAAACAACAGGGGCGaaa > 1:699317/1‑140 (MQ=255)
cACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTAAAGGAATAGAA‑ACTGAAAAAGTAAGATGTATTAGTCCGGAAAGAAAAATACTATGGCGCAAAAccc > 1:998561/1‑139 (MQ=255)
cccTCGCAGTTTAAAAACCCCGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTGTTACAGGAATCGAA‑AATGAATCCGTACGATTTCTTCTTCCGTATCGCCAACTAATGGGGCGAAAAGcag > 8:237731/1‑136 (MQ=255)
cccTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGc > 6:327372/1‑140 (MQ=255)
acTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCTGGACGTGGGGTTTAAAGGAATCGAA‑AAAGAATCAGTACGATGTCTGAGTACGTAACTAAAACTACTGTGTAGAAAAGCCGGCg > 6:911552/2‑140 (MQ=255)
tCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTACAGGAATCGAA‑ACTGAATAAGTACGATGTCTACGTCCGGAACGAAAACTACTGGGGCGAAAATCCGGCg > 8:631775/1‑138 (MQ=255)
aGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTa < 8:107412/138‑1 (MQ=255)
ttAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTACACGAAACGAA‑ACTTAATCAGTACCATGTATTCGTCCGTAACGAAAACTACTCGGGAGAAAAGCCAGCGATTaaaa > 7:502606/1‑138 (MQ=255)
aaaacCCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 4:473158/140‑1 (MQ=255)
aaaaaCCAGGAAACCATGAACGGAATTAACGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCTTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 4:426166/140‑1 (MQ=255)
aaaaaCCACGACACCATGACAGTAATTAAAGCGCCGAGTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 5:355787/140‑1 (MQ=255)
aaaaaCCACGAACCCAAGAACGGAATTAACGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGTAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGTCGAAAAGCCGGCGATTAAAAAg < 8:268093/138‑1 (MQ=255)
aaaaaCCACGAAACCATGACCGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 5:720998/140‑1 (MQ=255)
aaaaaCCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 1:427911/140‑1 (MQ=255)
aaaaaCCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGGCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 4:746492/140‑1 (MQ=255)
aaaaaCCACCAAACCATGAACGGAAATAAAGCGCAGATTGGCACCGCGCCTGGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 2:923191/140‑1 (MQ=255)
aaaaaCCAAGAAACAATGACCTGAATTACAGCGCCGAGTGGACCCGGGCCGTGGGTTTTACAGTACTCGAA‑AATGAATAAGTACTATGTCTTCGTCAGTAAAGAAAACTACTGGGTCGAAAAGCCGGCGATTAAAAAGAt < 5:923780/140‑1 (MQ=255)
cACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCtt < 3:382586/140‑1 (MQ=255)
cACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCtt < 6:402277/140‑1 (MQ=255)
aCGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTTCAGGAATCGAA‑ACTGAATAAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCttt > 3:194923/1‑140 (MQ=255)
aCGAAACCATGAACGGAATAAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTAGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCttt > 2:755200/1‑140 (MQ=255)
caCCATCAACGGAAATAAACCGCCGATTGGCACCGTGCCGGGGGTTTTACAGTAATCGAA‑ACTGAATCAGTACGTTGGCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACg < 4:408474/139‑1 (MQ=255)
aaCCCTGAACGTAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACg < 4:187535/140‑1 (MQ=255)
aaCCATGTACTGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGGCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTaa < 7:289857/138‑1 (MQ=255)
aCCATTAACGGAATTAACGCGCCGATTGTCACCGGGCCGTGTGATTTACAGGAATCGAA‑CCTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGt < 6:908701/140‑1 (MQ=255)
aCCATGACCGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTAAAGTAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGt < 4:646222/140‑1 (MQ=255)
aCCATGAACGGAATTAAAGCGCCGATTGGCACCGGTCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGt < 3:544893/140‑1 (MQ=255)
aCCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAAc < 8:942871/138‑1 (MQ=255)
aCCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGt < 6:600024/140‑1 (MQ=255)
tGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTACAGGAATCGAA‑ACTGCATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATc > 4:488927/1‑140 (MQ=255)
aaCGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATccc < 2:1088411/140‑1 (MQ=255)
cGGAATTAAAGCGCCTATTGGCACCGGGCCGTTGGTTTTACAGGAATCGAA‑AATGAATCATTACGATGTCTTCGTCCGTAACGAAAACTACTGGTGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATccc < 8:736284/138‑1 (MQ=255)
ggACTTAAAGCGCCGATTGGCACGGGGGCGTGGGTTTTACAGGAATCGAA‑ACTTAATCAGTACGATGTATTCGTCCGTAACGAAAACTACTGGTGCGATATGGGGGCTATTAAAAAGATCACCTTTAACGTGATcgtgta < 6:594295/140‑6 (MQ=255)
gAATTAAATCGCCGTTTGGTCCAGGGGCGGGGGTTTTTTAGGAATCGAA‑AGTGAATCAGTACTATGTCTTCGTCCGTAACGAAAACTACTGGGGCGTAAAGCCGGCGATTAAAAAGATAACCTTTAACGTGATCCCGGAc < 2:847446/140‑1 (MQ=255)
aaTTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAAc > 2:688558/1‑79 (MQ=255)
aaTTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGAcc > 3:7377/1‑140 (MQ=255)
ccGATTGGCACCGGGCCGTGGGTTTTTCAGGAAACGCA‑ACTGAATAAGTAAGATGTCTTCGTACGTAACGAAAACTAATGTGGCGAAAAGCCGGCGATTAAAAAGATCAACTTTAACGTGATCCCGGGCCCGACTAaccc > 6:289841/1‑139 (MQ=255)
ccGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTACGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGCCTAaccc > 2:574552/1‑139 (MQ=255)
ccGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑AATGAAAGAGTAAGAAGTCTTCGTACATAACGAAAAAAACTGGGGCCAAAAGCCGGCGAATAAAAAGATCACCGTTAACGTGAGCCCGGACCCCACTaac > 8:486342/1‑136 (MQ=255)
gATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGCATCAGTACGATGTCTTCGTCCGTAACGAAAACGACGGGGGCGAAAAGCCGGCGATTTAAAAGATACCCGTTAACGTGATCCCGGACCCGACTAcccc > 8:917374/1‑137 (MQ=255)
ggCCGTGGGGTTTACAGGAATCGAA‑ACAGAATCAGTACGCTGTCTTCGTCCGTAACGAAAACTAATGGGGCGAAAAGCCGGCGATTAAAAAGATAACCATTAACGTTCTACCGGACCCCCCTACCCCCGCGGTGGCGttt > 2:994133/1‑140 (MQ=255)
ccGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTACCCGCGCGGTGGCGttt < 7:535976/138‑1 (MQ=255)
ccGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTAGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATACCGGACCCGACTACCCCCGCGGTGGCGttt > 8:551377/1‑138 (MQ=255)
cGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTACCCGCGCGGTGGCGTTTGaa < 3:718737/140‑1 (MQ=255)
gTGGGGTTTAAAGGAATCGAA‑ACTGAATCAGAACGATGTCTTCGTCCGTAACGATAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTACACGCGCGGTGGCGTTTGaat < 5:177612/140‑2 (MQ=255)
tGGGGTTTACAGGAATCGCA‑ACTGAATCAATACGATGTGTTCGTCCCTTAAGAAAACTACTGGGGCGAAAAGCCGGCGCGTAAAAAGATCACCTTTAACGTGATCCCCGCCCCGACTACCCCCGCGTGGGCGTTTGAAAc > 4:654854/1‑140 (MQ=255)
gTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTACCCGCGCGGTGGCGTTTGAAACTgg < 1:960592/140‑1 (MQ=255)
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CCTGAAAAGCGCCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAA‑ACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTACCCGCGCGGTGGCGTTTGAAACTGG > NZ_CP022686/2361355‑2361627
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
