Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F35 I0 R1
|
304 |
9232.4 |
10623078 |
98.3% |
10442485 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,361,489 |
T→G |
11.8% |
V188G (GTT→GGT) |
nikA → |
nickel ABC transporter substrate‑binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,361,489 | 0 | T | G | 11.8%
| 332.4
/ 11.0
| 191 | V188G (GTT→GGT) | nikA | nickel ABC transporter substrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base T (64/100); new base G (24/3); total (88/103) |
| Fisher's exact test for biased strand distribution p-value = 1.17e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 192 total aligned reads displayed.
CCCTGAAAAGCGCCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTACCCGCGCGGTGGCGTTTGAAACT > NZ_CP022686/2361354‑2361625
|
cTGAAAAGCGCCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTa < 3:112490/138‑1 (MQ=255)
aGCGCCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATc < 8:393453/140‑1 (MQ=255)
cgcCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAACGCGCCGATTGGCACCGGGCAGTCGGGTTTTCAGGAATCgc > 2:1054489/1‑139 (MQ=255)
cgcCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTAAAGGAATCGa > 2:1247220/1‑140 (MQ=255)
ccTACTAACCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCATTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGaaa < 6:711638/140‑1 (MQ=255)
actaTCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAAc < 4:202573/138‑1 (MQ=255)
actaTCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGATTTATAGCAACCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCAACGGGCCGTGGGGTTTACATGAATCGTCACTg > 6:656596/1‑140 (MQ=255)
taTCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGAGCCGATTGGCACCTGGCCGTGGGTTTTTAAGGAAAAGAAAcat > 3:1329279/1‑136 (MQ=255)
aTCCTTTCCTGCAAGACCTGGCCCTGCCCCGTCCTTTCCGTTTTCTCCCACCCTCGCAGTTTAAAAACCCCGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAAt < 8:1227497/140‑1 (MQ=255)
aTCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGa < 3:622638/138‑1 (MQ=255)
aTCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGATTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCAAGAACGCAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAAt < 5:1168139/140‑1 (MQ=255)
aTCCTTTCCATCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGa < 3:725324/138‑1 (MQ=255)
tCCTTTCCTGCAAGACCTGGCCCTGCCCCGTCCCTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATc < 8:1138692/140‑1 (MQ=255)
ttCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTa < 1:961617/140‑1 (MQ=255)
ttCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTa < 7:1241862/140‑1 (MQ=255)
ttCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACGGAATCACTa > 1:417223/1‑140 (MQ=255)
tCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAACCCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTACAGGAATCTAAACTGAAACAGTAc > 5:855217/1‑140 (MQ=255)
tCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTAc > 6:152676/1‑140 (MQ=255)
tCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACAGGGCGGTGGGGGTTTCAGGAATCGAAACGGAATAAGTag > 1:442025/1‑139 (MQ=255)
tCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGAACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGCAACTGAATCAGTAc > 2:741220/1‑140 (MQ=255)
ccTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGTAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACg < 7:444576/140‑1 (MQ=255)
ccTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACg < 5:625003/140‑1 (MQ=255)
ccTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCAAGACAGGAATTAAAGCGCCGATTGGCCCCGTGCCGTGGGTTTTACAGGAATACAAACTTAAACCGTa > 4:569860/1‑138 (MQ=255)
ccTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTCTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACg < 5:386759/140‑1 (MQ=255)
ccTGCAAGAACTGGCCCTGCACCGTCCTGTCCGTTTTATCGCACACTCGCAGATTAAAAACAACGAAACCATAAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTGTACAGGTATCGAAAAAGCATCAGTAcc > 2:118155/1‑139 (MQ=255)
ccTCCAACACCTGGCCCTGCCCCGCCCTTTCCGTTTGATCGCCCACTCGCAGTTTAAAAACCACGAAACCATGAACGGAATAAACGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACg < 5:306515/140‑1 (MQ=255)
ccTACAAGAACTGGCCCTGCCCCGGCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACCAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACg < 2:1144968/140‑1 (MQ=255)
ccAAGAACTGGCCCTGCCCCGTCCTTTCAGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATg < 1:566876/139‑1 (MQ=255)
cAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTAAAGGAATCGGAAATGAATAACTACGAGGt > 1:104292/1‑140 (MQ=255)
cAAGAACTGGCCCTGCACCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACAACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGGATCTAAACAGCATCAGTTCGATGt > 1:904212/1‑140 (MQ=255)
gCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTACAGGTATCGAAACTGAATCAATACGATGTCTTCGTccc > 5:65746/1‑139 (MQ=255)
tGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGAGTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAAc < 6:709271/140‑1 (MQ=255)
cccGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACg < 3:150272/138‑1 (MQ=255)
cccGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGaa < 7:730118/140‑1 (MQ=255)
cccGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGaa < 8:9161/140‑1 (MQ=255)
cccGTCCTTTCCGTTTTATACCACCCTCTCAGTTTAAAAACCACGAAACCATGAACGTAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGaa < 6:135898/140‑1 (MQ=255)
cccGTCATTGCGGTTTTATCGCACCCTCGCAGTTTAAAAACCTCTAAACCATGAACGGAATTAATGCGCCGATTGGCACGGGGCCGTGGGTGTTACAGGAATCGAATCTGAATCAGTACGATGTCTTCGTCCGTAACg < 4:735270/138‑1 (MQ=255)
cccGACCTTTCCGTTTTATCGCCCCCTCGCATTTTAAAAACCTCGAAACCATGAACTGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGTTATTTAATCATTACGATGTCTTCGTCCGTatagaa < 6:1066375/140‑6 (MQ=255)
cccGACCTTTCCGTTTAATCGCACCCTCGCAGGTTAAAAACACAGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGaa < 1:1051538/140‑1 (MQ=255)
tcatttCCGTTTTATCGAACCCTAGCAGATAAAAAACCACGAAACAATGAAAGTAATTAAAGCGCCGATTGGCACCGGGACGTGGGTTTTTCAGGAATAGAAACTTAATCAATAAGATGTCTTCGTCAGTAAACAAAact > 8:1067025/4‑140 (MQ=255)
tacTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCCCCGCGCCGTTGGTTTTAGATGAATAGCAACAACATCAGTACAATTTCTTAGACCCTAAAGcaaaaa > 5:1057400/3‑138 (MQ=255)
tCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCAGTGGGTTTTTAAGGTAACGAAACAGAAAAAATACGATGTCTTCGTCCGTAACCaaaaaa > 6:1084411/1‑138 (MQ=255)
tCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAAACACGAAACCATAAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTAAAAGAATCGATAATTAATCAGTAAGATGTATTCGTCCCTAACAaaaata > 8:653242/1‑138 (MQ=255)
ccTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATAGCAAATTAATCAGTACGCTGTCTTGGTCCGTAACGAAAac > 4:1192653/1‑138 (MQ=255)
ttCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTACAGGAATAGAAACTGAATCATTACGATGTCTTAGTCCGTAAAGAAAACAACTg > 5:515157/1‑140 (MQ=255)
tCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAAGAATAGAAACAGAATCACTACGAAGTCTTAGTACGTAACCAAAACTACAgg > 8:437678/1‑140 (MQ=255)
tCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTAAAGGAATCTAAACTGAATCAGTACGATTTCTTAGTCCGTTAAGAAAACTACTgg > 7:1082540/1‑140 (MQ=255)
tataGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGTCACCGGGCCGTGGGTTTTACAGGCATCGAAACTGAATAAGTACCATGTCTTACTACGTAACGAAAACTAAAGGGGCGa > 4:989509/1‑138 (MQ=255)
aTCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTAGGCCCTTAAGAAAACTACTGGGGCGaa > 4:317338/1‑138 (MQ=255)
ccccTCGCAGTTTAAACACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGcc < 4:238745/137‑1 (MQ=255)
cccTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTTCATGAATAGAAACTGAATAAATACGATGTCTTGGTCCGTAACGAAAACTACTTGGGCGAAAAGCCGGc > 6:987000/1‑140 (MQ=255)
cccTCGCAGTTAAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCTGCACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGc < 2:88738/140‑1 (MQ=255)
cTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGa < 2:1369401/140‑1 (MQ=255)
tAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTTCAGGAATCGAAACTGAATCAGTACGATGTCTTAGTCCGTAAAGAAAACTACTGGGGCGAAAAACCGGCGATTAAAAAGa > 1:635430/1‑140 (MQ=255)
tAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTACAGGAATCGAAACAGAATCAGTAAGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGACAAGACGGCGATTAAAAAGa > 2:121811/1‑140 (MQ=255)
aaaacacACGAAACAATGAACGGCATTACAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 6:24147/134‑1 (MQ=255)
aaaaaCCACTAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 2:1168802/140‑1 (MQ=255)
aaaaaCCACGAACCCATGAACGGAATTAACGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 2:468677/140‑1 (MQ=255)
aaaaaCCACGAAACCATTAACGGAATTAAATCGCCGATTGGCACCGGGCCGTTGGTTTTACAGGAATCGAAACTGAATCAGTACGATGGCTTCGTCCGCAACTAAAACTACTGTGGCGAAAAGCCGGCGATTAAAAAGAt < 2:1277792/140‑1 (MQ=255)
aaaaaCCACGAAACCATTAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAg < 3:913743/138‑1 (MQ=255)
aaaaaCCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAg < 3:304499/138‑1 (MQ=255)
aaaaaCCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 8:161453/140‑1 (MQ=255)
aaaaaCCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 2:596784/140‑1 (MQ=255)
aaaaaCCACGAAACCAAGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGAAGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGAt < 5:987000/140‑1 (MQ=255)
ccGAAACCATGAACTTAATTAAAGCGCCTATTGGCACCGGTCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCt < 3:781823/137‑1 (MQ=255)
ccGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCttt < 6:459230/139‑1 (MQ=255)
aCGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACACGAATCGAAAAAAAATAACTAACAAAAAATCGTACGTAACGCAAACTACAGGGGCGAAAACCCGGCGATTAAAAAGATAACCatt > 2:486916/1‑140 (MQ=255)
aCGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTAAAGGAATCGAAACTGAATCAGTTCGATGTCTTCGTCAGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCttt > 6:595879/1‑140 (MQ=255)
aCGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGGTTTTAAGGAAACCAAACAGAAACATTACCATGTTTTCCTCCCGAACCCAAACAACTGGGGCGCACAACCGGCGATTAAAAAGATCAccctg > 5:214013/1‑137 (MQ=255)
gAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACa > 3:843283/1‑53 (MQ=255)
gAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACa < 4:843283/53‑1 (MQ=255)
aaCCATGAACGGAATTAACGCGCCGAGTGGCCCCGGGCCGTGGGGTTTACAGGAAGCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTaa < 4:746022/138‑1 (MQ=255)
aaCCAAGAACGTAATTAACGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGGCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTaa < 4:48655/138‑1 (MQ=255)
cccATGAACTGAATTAAAGCGCAGTTTGGCACCGGGCCGTGGGTGTTACAGGAAGCGAAACTGAATCAGTACGATGTCTTCGTCAGTAACTAAAACTTCTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGt < 7:570142/139‑1 (MQ=255)
aCCATGAACGTAATTAAAGCGCCGATTGGCACCGGGCCGTTGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAATATCACCTTTAAc < 4:539974/138‑1 (MQ=255)
aCCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCAAAAAGCCGGCGATTAAAAAGATCACCTTTAACGt < 5:47497/140‑1 (MQ=255)
tcaccGGAATTAAAGCGCCGATTGGCAACGGGCCGTGGGTTTTTCAGGAATCGAAACTGAATGAGTACGAGGTCTTCGTCCGGAACGAAAACTACGGGGGCGAAATGCCGGGGATTAAAAAGATGACCGTTAACGTGAta > 8:800829/5‑139 (MQ=255)
tGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATc < 5:1091943/140‑1 (MQ=255)
tGAACGGAATTAAAGCGACGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATc < 2:349337/140‑1 (MQ=255)
aCGCAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGGCTTCGGCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCg < 6:844748/140‑1 (MQ=255)
ctgAATTAATGCGCCGAGTGGAACCGGGCCGGGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTGCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCgg < 1:538640/138‑1 (MQ=255)
cGGAATTAAAGCCCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCgg < 8:724852/140‑1 (MQ=255)
aaTTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGaa < 7:185616/97‑1 (MQ=255)
aaTTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGaa > 8:185616/1‑97 (MQ=255)
ttAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAAAAGAAACTGAATAAATAAGATGTAATCGTCCCTAACGAAAACAACTGGGGGGAAAAGCCCGCGATTAAAAAGATCTACATTATAGTGATCCCGGAcc > 4:438194/1‑138 (MQ=255)
aaaGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGAc < 1:1132005/140‑1 (MQ=255)
gcgcCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATAACCTTTAACGTGATCCCGGACCCGAca > 3:1012735/1‑137 (MQ=255)
ccgcCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGACTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTAc < 8:1016333/139‑1 (MQ=255)
ccGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAACCTGCATCAGTACGCTGTCTTCGTGCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGCTTAAAAAGATCACCGTTAAGCTGATCCCGGACCCGCCTAcccc > 6:752783/1‑139 (MQ=255)
ccGATTGGCACCGGGCCGAGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACTTGATCCCGGACCCGACTACCcg > 7:1253421/1‑140 (MQ=255)
gATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTTACGAAAACTACTGGGGCGAAAAGCCGGCGCTTAAAAAGATCACCTTTAACGTGATCCCGGCCCCGACTAcccc > 4:1289175/1‑137 (MQ=255)
gATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGCTCACCTTTAACGTGATCCCGGCCCCGCCTACCcg > 3:1233836/1‑138 (MQ=255)
gATTGGCACCGGGCCGTGGGGTTTACAGGAATCGAAACTGAATCAGTTCGATGTCTTCGTGCGGAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATAACCGTTAACGTGATGCCGGACCCGACGAccag > 4:64847/1‑136 (MQ=255)
gCAGCGGGCCGAGGGTGTAACAGGAATCTAAACTGAATCAGTCCGATGTCTTCGTCCGTAACTAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTACCGTGATCCCGGACCCGACTACCCGCGCGGTg < 8:841833/140‑1 (MQ=255)
gCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTACCCGCGCGGTg < 5:107076/140‑1 (MQ=255)
ggCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGGAACGAAAACTACTGGGGGGAAAAGACGGCGATTAAAAAGATCAACTTTAACGTGATCCCGGACCCGACAACCCCCGCGGTGGCGgtt > 2:621844/1‑140 (MQ=255)
ggCCGTGGGTTTTAAAGGAATCGAAACTGAATAAGTAAGAAGTCTTAGTCCCTAAAGAAAAATACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGAAACCCGCCCCGACTACCCGCGCGTGGGCGgtt > 2:789649/1‑140 (MQ=255)
ggCCGTGGGGTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTGCGTAACGAAAACTACAGGGGCGAAAAGCCGGCGATTAAAAACATCACCTTTAACGTGATCCCGGCCCCGACTACCCGCGCGGTGGCGgtt > 2:960364/1‑140 (MQ=255)
ggagtgtgtTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTACCCGCGCGGTGGCGTTTg < 1:1260597/137‑1 (MQ=255)
ccGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGGAACGAAAACTACTGGGGCGAAAAGCCCGCCATTAAAAAGATCCCCTATAACGTGATCCCGGACCCGACTACCCCCCCGGTGGCGttt > 4:1324986/1‑138 (MQ=255)
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CCCTGAAAAGCGCCTACTATCCTTTCCTGCAAGAACTGGCCCTGCCCCGTCCTTTCCGTTTTATCGCACCCTCGCAGTTTAAAAACCACGAAACCATGAACGGAATTAAAGCGCCGATTGGCACCGGGCCGTGGGTTTTACAGGAATCGAAACTGAATCAGTACGATGTCTTCGTCCGTAACGAAAACTACTGGGGCGAAAAGCCGGCGATTAAAAAGATCACCTTTAACGTGATCCCGGACCCGACTACCCGCGCGGTGGCGTTTGAAACT > NZ_CP022686/2361354‑2361625
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
