Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F2 I0 R1
|
122 |
5985.5 |
7364544 |
98.3% |
7239346 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,184,330 |
G→T |
12.1% |
F64L (TTC→TTA) |
rplO ← |
50S ribosomal protein L15 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,184,330 | 0 | G | T | 12.1%
| 331.2
/ 6.8
| 154 | F64L (TTC→TTA) | rplO | 50S ribosomal protein L15 |
| Reads supporting (aligned to +/- strand): ref base G (94/33); new base T (4/22); total (98/56) |
| Fisher's exact test for biased strand distribution p-value = 3.02e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 154 total aligned reads displayed.
TTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGATACCACGACCCA > NZ_CP022686/2184196‑2184466
|
ttCCCGAACTCGAGCTGGATACCGATACTGTTAGCCGCTTTCAGCGTGTGCAGGTCTACAACACCGCCTTCTACTTTCGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAAt < 6:177656/138‑1 (MQ=255)
tCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAAtt > 5:656737/1‑138 (MQ=255)
tCGCGAACTCGATCTGGATACAGATAATGTTAGCCGCTTACAGCGTGTTAACCTCTACAACACCGCCTACTACTTAAGCCAGGTCAGACAGACGAACTACGGCTGTAAACGCTGCTTTACGAGAAGAGAAGCCGAAtt > 5:338258/1‑138 (MQ=255)
cgcgAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGGGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCg < 8:144756/140‑1 (MQ=255)
ggATCTTTATACCTATATTGTTAGCCGCTTTCTGCGTGTTCAGGTCTACAACACCCCCTTCTATTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACTAGAAGTGAAGCCTAATTTCGGCAgacga < 7:128532/139‑1 (MQ=255)
ggATCTGGATACCTATATTTTTCGCCGCTTTCAGGGTGTTCAGGTCTACAACACCGCCTTCTCATTTCGCCCGGGCAGACAGACGAACTTCGGCTGTAATCGCTGCTTAACTAGAAGTTAAGCCGAATTTCGGCAgacga < 8:349357/139‑1 (MQ=255)
ctaTCTGTATACCTATAATGTTAGCCGGTTTCTGCGTGTTAATGTATACAACACCCCATGCAAATTTAGCCAGGTCATACAGACTAACTTCGGCTGTAATCGCTGCTTTCCGAGAAGTGAAGCCGAATTTCGGAAgacga < 8:402842/138‑1 (MQ=255)
ccctCTGTATACCGATAGTGTTTGCCGGTTTCCGCGGGTTCAGGTCTACCAAACGGCATTCTATTTTCGCCGGGGAAGACCGACGAACTTCGGTTTTATTCGCTGATTTACGATAAGTGAAGCCGAATTTCGGCAgacga < 8:349355/137‑1 (MQ=255)
cGATCTGGATCCCGATAATGTTCGCCGCGTTCTGCGTGTTCAGGTCAACAACACCGCCTTCTAATTTAGCCAGGTCAGACACACTAACTTGGGCTGTAATGTCTGCTTTACGATAAGTGAAGCCGAATTTCGGCAgacga < 2:609118/140‑1 (MQ=255)
cGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTCGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAgacga < 4:829341/140‑1 (MQ=255)
cGATCTGGATACCGATAATGTTAGCCGATTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTACCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTCCGAGAAGTGAAGCCTAATTTCGGCAgacga < 4:687281/140‑1 (MQ=255)
cGATCTGGATAACGAAAATTTTAGCCGATTTCAGCGGGTTCAGGTCTACAACACCCCCTTCTACTTTCCCCAGGTCATACATACTAACTTCTGCTGTAATCGCTGCTTTACGACAAGTTTATCCGATTTTCGGCAgacga < 8:665831/140‑1 (MQ=255)
cGATCTGCATACGGTTAATGTTCGCCGCTTTCAGGTTGTTCAGGTCTACACCACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGACGTGAAGCCTAATTTCGGCAgacga < 8:428923/140‑1 (MQ=255)
tCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAgacgac > 5:442883/1‑138 (MQ=255)
ctACCTATAATGTTAGCCGCTTTCAGGGTGTTCAGGTCGACAACCCCGCCTTCTACTTTAGCCCGGTCTGACTGACGAACTTGGGCTGTAATCGCTGCTTTACCTGAAGTGACGCCTATTTTCGGCAGACGACGGTACag < 8:656653/139‑1 (MQ=255)
caCCTATATTGTTAGCCGCTTTCCGGGTGTTCTGGTCTACAACCCCGCCTTCTAATTTAGCCTGTTCAGACCTACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGCGAAGCCTAATTTCGGCAGACGACGGTACa < 6:864491/137‑1 (MQ=255)
aTGTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTg > 8:258145/1‑140 (MQ=255)
gTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTg > 5:772905/1‑138 (MQ=255)
gTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTg > 6:139029/1‑138 (MQ=255)
ttAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGacc > 4:468605/1‑140 (MQ=255)
aGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGcccac > 1:469607/1‑140 (MQ=255)
aGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGaccac > 7:39418/1‑140 (MQ=255)
aGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGaccac > 7:470740/1‑140 (MQ=255)
aGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGaccac > 4:651873/1‑140 (MQ=255)
aGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGaccac > 1:117605/1‑140 (MQ=255)
aGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGaccac > 1:169807/1‑140 (MQ=255)
aGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCAACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTAGGAGAAGTGAAGCCTAATTTCGGCAGACGACGGTACAGAGGCTTCTGaccac > 2:660018/1‑140 (MQ=255)
aGCCGCTTTCAGCGTGTTCAGGTCTACAACAACGCCTTCTACTTTAGCCAGGTCAGACCGACGAACTTCGGATGTAATCGCTGATTTACGAGAAGTGAAGCCGAAGTTCGGCAGACGACGGTCCAGAGTCATCTGcccac > 8:218643/1‑140 (MQ=255)
aGCCGCTTACAGCGTGTTCAGGTCTACAACACCGCCGTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCAGTAATCGCAGCGTAACGAGAAGTGCAGCCGAAATTCGGCAGACGCCGGTACAGAGGCATCTGaccac > 8:57839/1‑140 (MQ=255)
ccGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGAAGAACTTCGGCTGTAATCGCTGCTTTACGAGACGTGAAGCCGTATTTAGGCAGACGCCGGTACAGAGGCAGATGcccac > 6:704194/1‑138 (MQ=255)
cAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGaa > 5:190870/1‑138 (MQ=255)
ttCAGGTCTACAACGCCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACg > 3:772985/1‑140 (MQ=255)
caacaacaCCGCCTTCTACTTTAGCAAGGTCAGAAAGACGAACTTCGGCTGTAATCGCTGCTTTACGATAAGTGAAGCCGATTTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCa < 4:457363/138‑1 (MQ=255)
tACAACACCGCCTTCTACTTTAGCCAGGTCAGCCAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCAc > 1:203894/1‑140 (MQ=255)
caacaCCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCg > 4:933525/1‑140 (MQ=255)
acacCGCCTTCTACTTTAGCCAGGTCAGAAAGACGAACTTCGGCTGTAATCGCTGATTTACGAGAAGTGAAGCCGAATTTCGGCAGACGCCGGTACAGAGGCATCTGACCCCCCTCGAAACCGCGACGTACGACACCg > 5:219775/1‑138 (MQ=255)
ccGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGa > 4:268475/1‑140 (MQ=255)
cGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCCCCCTCGACACCGCGACGTATGCCCCCGCCAGac > 2:548679/1‑139 (MQ=255)
cGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGac > 4:292046/1‑139 (MQ=255)
cGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGaa > 3:883608/1‑140 (MQ=255)
cGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGaa > 1:827143/1‑140 (MQ=255)
cGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGaa < 2:685896/140‑1 (MQ=255)
ccTTCTACTTTAGCCTGCTCAGACAGACGAACTTCGGCTGAAAACGCTGCTTTACGAGAAGTGAAGCCGATTATCGGCAGACGACGGTACAGAGGCATCTGCCCACCCTCGAAACCGCGACGTACGCCACCGCCAGaa > 5:112562/1‑138 (MQ=255)
ccTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGaa > 5:50442/1‑138 (MQ=255)
ccTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGaa > 5:275655/1‑138 (MQ=255)
ccTTCTACTTTAGCAAGGTCAGAAATACGAACATCGCCTGTAATAGCTGCATAACGATAAGAGAAGCCGAATTTCGGCAGACGACCGTACAGACGCAACTGACCACCATCGAAACCTCCACGTACGCCACCCCCAGaa > 5:905063/1‑138 (MQ=255)
attCTACTTTAGCCCGGTCAGACAGACGAACTTCGGGTTTAATCGCTGCTTTACGATAAGTGAAGCCTAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAAc < 6:447013/137‑1 (MQ=255)
tCTACTTTAGCCAGGTCAGACAGACGAACTTCTGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAAAATCCGCAGACGACGGTACAGAGGCATCTGACCACCCTCCAAACCGCGACGTACGCCACCGCCAGAACgaga > 7:396506/1‑140 (MQ=255)
tttCGCCCGGTCAGACAGACGAACTTCGGCTTTAATCGCTGCTTTACGAGATGTGAAGCCTAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCt < 1:109744/140‑1 (MQ=255)
tttAGCCAGGTCAGACAGACCAACTTCGGCTGTAATCGCTGGTTTCGGAGACGTGAAGCCTAATTTCGGCTGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCt < 3:364130/140‑1 (MQ=255)
tAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGa > 2:117058/1‑140 (MQ=255)
tAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGa > 1:393046/1‑140 (MQ=255)
gCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGCCGTACGCCGCCGCCCGAACGAGATTTCTgc > 6:363254/1‑137 (MQ=255)
ccAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGCCGTACGCCACCGCCAGAACGAGATTTCTGACCt > 1:524515/1‑140 (MQ=255)
gTCAGACAGACGAACTTCTGCTGTAATAGCTGCATTACGAGAAGTGAAGCCGAATTTCTCCAGACGACGGTACATAGTCATCTGACCACCCTCGACACCGCGAAGTGCGACACCGCCAGAGCGAGATTACTGACCTTtgg > 4:113253/1‑139 (MQ=255)
gTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTtgt > 1:325750/1‑140 (MQ=255)
gTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTtgt > 4:798960/1‑140 (MQ=255)
cagacagaCGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCTAATTTCGGCAgac > 5:737918/1‑63 (MQ=255)
cagacagaCGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAgac < 6:737918/63‑1 (MQ=255)
cagacagaCGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTtgt > 5:138157/1‑138 (MQ=255)
cagacagaCGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGAACAGAGGCATCTGACCCCCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTtgt > 5:279337/1‑138 (MQ=255)
cagacTAACTTCGGCCGTAATCGCTGCTTTCCGAGAAGTTAAGCCTAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAACCCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTgaccac < 2:499624/140‑1 (MQ=255)
cagacGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTgaccac > 1:928601/1‑140 (MQ=255)
acGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGCCCACCCTCGAACCCGCGACGTACGCCCCCGCCAGAACGAGATTTCTGACCTTTGTgaccccgac > 1:635518/1‑140 (MQ=255)
acGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTgaccacgac > 8:239340/1‑140 (MQ=255)
acGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACAGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTgaccacgac > 2:1667/1‑140 (MQ=255)
acGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCAGAATTTAGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGAACTTTGTtacaacgac > 2:880969/1‑140 (MQ=255)
cGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTgaccacgacc > 2:293018/1‑140 (MQ=255)
cGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACAACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTgaccacgacc > 2:249219/1‑140 (MQ=255)
accTTCGGCTGTATTCGCTGCTTCACGAGAAGTGCAGCGTAATTCCGGCAGTCGACGGTACAGAGGCATCTGACCACACTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTgaccacgaccac < 2:919475/138‑1 (MQ=255)
ttCGGCTTTAATCGCTGCTTTACGAGAAGTCACGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCgg < 3:486333/140‑1 (MQ=255)
ttattggctgatTTACGATAAGTCATGCGGAATTTCGCCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTa < 6:772905/132‑1 (MQ=255)
gTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTAcc < 2:117605/140‑1 (MQ=255)
tAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTAcc < 4:895599/139‑1 (MQ=255)
tAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTAcc > 3:895599/1‑139 (MQ=255)
cGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTTGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGc < 3:924338/140‑1 (MQ=255)
cGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAg > 5:800911/1‑138 (MQ=255)
gcggctTTACGCTAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGcc < 7:585652/137‑1 (MQ=255)
ctgctTTACGATAAGTGTTTCCTAATTTCGGAAGACGACGGTACAGAGGAATCTTACCACCCTCGAAACCGCGACGTACGCCACCGACAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCa < 8:703458/140‑1 (MQ=255)
tgctTTACGAGAAGTTAAGCCTAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACACTCGAAACCGCGACGTACGCCACCGCCAGCACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAg > 2:731128/1‑140 (MQ=255)
tgctTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGTTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCCCGACCACCGGTTTTACCGAGGCCAg > 1:944235/1‑140 (MQ=255)
gctTTACGATAATTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGa < 8:182373/140‑1 (MQ=255)
cGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGAt > 7:214350/1‑140 (MQ=255)
cGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATATGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCg > 6:122014/1‑138 (MQ=255)
agaAGTGAACCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCTACGTACCCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGAt < 6:675783/138‑1 (MQ=255)
aaggtaaGACGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGATACCa < 1:253149/135‑1 (MQ=255)
aaGTTAAGCCTACTTTCTGCACACGACGGAACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGATATTTCTGACCTTTGTGACCAGGACCACCGGTTATACCGTGTCCAGAACCGATACCa < 8:508682/140‑1 (MQ=255)
aaGTGACGCCTAATGTCGGAAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGATACCa < 3:287287/140‑1 (MQ=255)
aaGTGACGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGATACCa < 2:369651/140‑1 (MQ=255)
aaGTGAAGCCGAATTTCGGAAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGATACCa < 3:285047/140‑1 (MQ=255)
aGTGAAGCCGAATTTCGGCAGACGCAGGAACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCCCCGCCACAACTAGATTTCTGACCTTTCTAACCACGACCCCCGGTTTTACCGAGGCCAGACCCGATACCAc > 7:640518/1‑140 (MQ=255)
tGAAGCCTAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGcc < 5:39001/124‑1 (MQ=255)
tGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGcc > 6:39001/1‑124 (MQ=255)
aaGCCTAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGATACCACGAcc < 1:254602/140‑1 (MQ=255)
aaGCCGAATTTCGGCAGACGACTGTACAGAGGCATCTGACCACCCTCGAAACAGCGACGTACGCCACCGCCAGCACGAGATTTCTGAAGTTTGTGACCACGACCACCTGTTTTACCGAGGCGAGAACCGATAGCACgc > 5:467941/1‑137 (MQ=255)
aaGCCGAATTTCCGCAGACGACGGTACAGAGGCATCTGTCCACCCTCGAAACCGCGCCGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCGGCACCGATACCACGa > 5:467939/1‑138 (MQ=255)
aGCCGAATTTCGGCTGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGGACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGACCCGATACCACGAccc < 1:557023/140‑1 (MQ=255)
gCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGATACCACGACCCa > 4:913211/1‑140 (MQ=255)
gCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGATACCACGACCCa > 2:168918/1‑140 (MQ=255)
gCCGAATTTCGGCAGAAGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGATACAACGAcc > 5:407162/1‑138 (MQ=255)
|
TTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACAACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAACTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGATTTCTGACCTTTGTGACCACGACCACCGGTTTTACCGAGGCCAGAACCGATACCACGACCCA > NZ_CP022686/2184196‑2184466
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
