Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F12 I0 R1
|
158 |
5737.7 |
7407908 |
98.3% |
7281973 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,808,135 |
C→A |
13.7% |
P444T (CCT→ACT) |
ubiB → |
ubiquinone biosynthesis regulatory protein kinase UbiB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,808,135 | 0 | C | A | 13.7%
| 341.1
/ 2.6
| 171 | P444T (CCT→ACT) | ubiB | ubiquinone biosynthesis regulatory protein kinase UbiB |
| Reads supporting (aligned to +/- strand): ref base C (39/93); new base A (32/2); total (76/95) |
| Fisher's exact test for biased strand distribution p-value = 2.66e-12 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 175 total aligned reads displayed.
AGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTACAGCATAGTGTTGATAAGATTGCCCGCGAGCTT > NZ_CP022686/2807996‑2808272
|
aGTGCAGCCGCAACTTGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTc < 1:279839/140‑1 (MQ=255)
tGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTTAAGATGAGGTCGGTATTccg > 2:6432/1‑139 (MQ=255)
tGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTATAGATCAGGTCGGTATTccg > 1:745664/1‑139 (MQ=255)
tGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATAAGGTCGGTATTACt > 3:745922/1‑140 (MQ=255)
ggCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACTTCGAAGGGGTAGGACGCCAGCTTTCTCCGCAACTCGATTTATGGACAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTc < 8:535196/137‑1 (MQ=255)
cAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCCGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAATATCAGGTCGGTATTCCTgc > 6:764218/1‑140 (MQ=255)
cAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCt > 2:762164/1‑138 (MQ=255)
cAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCt < 1:762164/138‑1 (MQ=255)
aGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTgcg < 5:268033/140‑1 (MQ=255)
gCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTACTgc > 7:765744/1‑138 (MQ=255)
gCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGAGTTAAGATCAGGTCGGTATTACTgagc > 3:552713/1‑140 (MQ=255)
gCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAATATAAGGTCGGGATTACTGCGCggg > 2:412086/1‑140 (MQ=255)
tgtTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGTTTAAAGAACAGATCGGTATTACTGCGCGGGTGAGACCa > 5:859178/1‑140 (MQ=255)
ttACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATAAAAGATAAGGTCGGTATTCCTGCGCTGGGGAGATCaat > 5:571817/1‑138 (MQ=255)
caccAGAAACCCCTGCTCTACGTCGAAGGGGTCTGACGCCAGATTTATCCGCAACTCTATTTATGGAAAACGGCGACGCCTTTCCTGGAGTCGTGGATTAAACATCAGGTCGGTATTCCTGCGCGGGTGATAGCAttt < 7:268733/136‑1 (MQ=255)
cTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGACTTTCCTGGAGTCGTGGATTAAATATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTaa < 6:745074/140‑1 (MQ=255)
tCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCGGGTGAGAGCATTTa > 7:171214/1‑138 (MQ=255)
tCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTACTGCGCTGGTGAGAGCAGTTa > 8:808564/1‑138 (MQ=255)
gAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGATGCCTTTACTGGAGTCGTGGATTTAAGATAAGGTCGGTATTACGTCGCTTGTGAGAGCATTtaaataaa > 3:543660/1‑140 (MQ=255)
gAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATGAGGTGGGTATTACAGCGCTGGGGAGAGCATTTAAAGaaa > 6:858454/1‑140 (MQ=255)
gAAAACCCTGCTCTACGTCGAAGGCGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGAGGCATAAATATAAGGGACGTATTCCTTGCCTGGTGACAGCCTTTAAAGaaa > 4:23397/1‑140 (MQ=255)
aaaCCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATAAAAGAACAGGGCGGTATTACTGCTCTGGTGAGAGCATTTTAATaaa > 8:865763/1‑138 (MQ=255)
cccTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTTAAGATGAGGTCGGTATTACAGCGCTGGTGAGAGCATTTAAAGAAAAAgcc > 5:372588/1‑139 (MQ=255)
cccTCCTCTCCGTCGAAGGGGTATGACGACAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAATAAg < 8:352016/138‑1 (MQ=255)
ccTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGGATTACTGCGCTGGGTAGAGCATTTAAAGAAAAAgcgc > 6:303312/1‑140 (MQ=255)
tGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGGCGGTATTCCTGCGCTGGTGAGAGCATTTAAATAAAAAGCGCCg > 4:280908/1‑140 (MQ=255)
ctctACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAATAACAGGTCCGTATTCCAGCGCTGGGGTGCGAAATTTAAGAATCAGAGCCGtt > 1:773357/1‑140 (MQ=255)
cGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTTAAGATACTGTCTGTTTTACAGCGCTGGTGAGATCATTTAAAGAAAAAGCGCCGttgaggg > 6:646881/1‑135 (MQ=255)
cGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTTTTCCTGCGCTGGTGAGAGCATTTAAAGAAAAATCGCCGTTCTggg > 1:701893/1‑140 (MQ=255)
gTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGt < 4:153924/140‑1 (MQ=255)
gggtgaGGACGCCATCTTTATCAGCAACTCGATTTATGTAAAACGGCTAAGCATTTCCTGGAGTAGTGGATTAAAGATCAGGTCTGGATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAATCGCCGTTCTGGGTCGaaaa < 2:572944/135‑1 (MQ=255)
ggggTAGGACGCCATCTTTATCCTCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTAGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTTGTGAGAGCATTTAAAGAAAAAGCGCCTTTCTGGGTCGaaaa < 4:670772/140‑1 (MQ=255)
ggggTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATAATGTAGGTATTACTTCACTGGTGAGAGAATTTAAAGAAAAAGCGCCATTCTGGGTCGaa > 7:311691/1‑138 (MQ=255)
ggggTAGGACGCCAGCGTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTGGTGGATTAAACAACAGGTCGGTATTAAAGCGCAGGTGAGAGCATTTAAAATAAAATCGCCGGTGTGGGTGGaa > 8:422697/1‑138 (MQ=255)
gTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTAGGTATTACTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAAt > 4:428696/1‑140 (MQ=255)
tAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGCAGCCTTTCCGGGAGTCGTGGGTTAAAGATAATGGCGGTTTTACGGCGGTGTGGGGACCATTTAAATCAAAATCGCCGGTCTGGGGCGAAAAAATg > 3:419689/1‑140 (MQ=255)
gCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAg < 7:404059/138‑1 (MQ=255)
ccAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGGTTAAAGATCAGGTCGGGATTAATGCGCGGGTGTGAGCATTTTAATAAAAAGCGCCGGTATGGGGCGAAAAAAAGACAGAAc > 1:140786/1‑140 (MQ=255)
ccAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAAc > 4:828301/1‑140 (MQ=255)
cAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGCTTTAAGATAAGGTCGGTATTACTGCGCAGGTGCCAGCATTTAAATAAAAAGCGCCGTTCAGGGGCGAAAAAATTCCACAACt > 1:95090/1‑140 (MQ=255)
gCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTTAAGATCAGGTCGGGTTTCCAGCGCAGGGGAGCGCATTTAAAGAAAAATCCCCGTTCTGGGTCGAAAAAATGCCAGAAca > 7:438405/1‑137 (MQ=255)
gCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATAAGGTCGGTATTACTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCCTTCTGGGGCGAAAAAATGCCGGAACt > 7:597126/1‑138 (MQ=255)
tATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGTTTTAAGATAAGGTAGGTATTAATTCGGAGGTTAGAGAATTTAAAGAAAAAGCGCCCATAGGGGTGGAAAAAATGACATAACTGACCgc > 1:248620/1‑139 (MQ=255)
tCCGCAACTCGCTTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTTGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAAc < 5:688558/140‑1 (MQ=255)
tCCGCAACTCGATTTATGGAAAACGGCGAATCCTTTCCTGGAGGCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAAc < 6:25133/140‑1 (MQ=255)
tCCGCAACTCGATTAATGGAAAACGGCGTAGCCTTTCCTGGAGTCGTTGATTAAAGATCAGGTCGGTATTCCTGAGCTTGTGAGAGCATTTAAAGAAAAAGCGCCTTTCTTGGTCGAAAAAATGCCAGAACTGCCCGAAc < 6:174498/140‑1 (MQ=255)
aaCTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAATATCAGGTCGGGATTACTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGtt > 4:780737/1‑140 (MQ=255)
taTTTATGGAAAACGGCGCAGCCTTGCCTGTAGTCGTGGATTAAAGATCATGGCGTTATGCCTGCGCTTGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGa < 5:773149/139‑1 (MQ=255)
taTTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTAc < 7:406590/137‑1 (MQ=255)
gATTTATGGAAAACGGCGCAGCCCTGCCTGGAGGCGTGGATTAAAGATCAGGGCGGGATTCCTGCGCGGGTCCGAGCATCTAACGAAAAAGCCCCGTGCTGGGGCTAAAAACTGCCAGAACTGCCCGAACTGGTTTAc < 7:790000/138‑1 (MQ=255)
aaaCGGCGAAGCCTTTCCTGTAGTCGTGGATTAAAGCAAATGTCGGGATTACGGCGATGTTTAGCTCATTGAAAGAACACGCCACGTCCGGGGGCGAAACAAAGCCCGCAAGGCCCGCACCGGTTTACTACACTTTgcgc > 6:908171/1‑140 (MQ=255)
aaCGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGGCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGcc > 6:677271/1‑140 (MQ=255)
aaCGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGAGCAGGTCGGTATTCCTGCGCGGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTgcg < 7:55756/138‑1 (MQ=255)
aCGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATAAGGTCGGTATTACGGGGCTGGTGAGAGCATTTTAAGAAAAAGCGCCGTTCTGGGTAGTAAAAAAGACAGAACAGCCCGCACTGGTTTAAGACACTTTGCGccc > 2:118838/1‑139 (MQ=255)
gagAAGCCTTTCCTGGAGTCGTGTATTAAATATCAGGTCGGTATTCCTGCGCTGGTGAGATCATTTAAAGAAAAAGCGCCGGTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTTGTTTACGACAGTTTGCGCCAggg < 1:392525/138‑1 (MQ=255)
gCGAAGCCTTTCCTGGTTGCGTGGATTCACGATCAGGTCGGTTTTCCTGCGCTGGTGATAGCATTTCAAGACAAAGCGCCGTTCTGGGGCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAggg < 1:388036/140‑1 (MQ=255)
gCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTGCTGGGTCGAAAAACTGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAg < 8:171214/138‑1 (MQ=255)
gCGAAGCCTTTCCAGGAGTCGGGGATTAAAGATCAGGTCTGTATTCCTGCGCTGGGGAGCGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAACTGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAggg < 4:501337/140‑1 (MQ=255)
cGAAGCCTTTCCTGGAGTCGTGGATTAAAGATAATGTCGGTATTGCGGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCCGTCTGGGTACAAAAAATGCCAGAACTGCCCGAACATGTATACGACAGTTAGCGCCAGGGc > 4:330316/1‑140 (MQ=255)
gAATCCTTTCATGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCTCTGGTGAGAGCATTTAAATAAAAAGCGCCGTTCTGGGTAGAAAAAAAGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCa < 6:109838/140‑1 (MQ=255)
aaGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTTTTCCTGCGCTGGTGCGAGCATTTTAAGAAAAAGCGCCCTTGTGGGTCGAAAAAATTCCAGAACTGCCCGACCTGGGTTACGCCAGTTTGCGCCCGGGc > 8:849578/1‑138 (MQ=255)
aaGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAggg < 1:19952/137‑1 (MQ=255)
aaGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAggg > 2:19952/1‑137 (MQ=255)
gCCTTTCCTGGAGTCGTTGATTAAAGATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGt < 2:886734/140‑1 (MQ=255)
gCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGt < 3:740691/140‑1 (MQ=255)
gCCTTTCCTGGAGTCGTGGATTAAAGATCAGGGCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCaa < 7:836340/138‑1 (MQ=255)
gCCTTTCCTGGAGTCGTGGATTAAAGATCAGGGCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGGCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGt < 5:207349/140‑1 (MQ=255)
cTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTAt < 3:522991/140‑1 (MQ=255)
tttCCGGGAGTCGTGGATTAAAGATCAGGGCGGTCTTCCTGCGCTGGTGAGAGCATTTAAAGAAAACGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGGTTACGACAGTTTGCGCCAGGGCAAGTAtt < 6:24284/140‑1 (MQ=255)
tacttgAGTCGTCTATTAAAGATCATGTCGGTATTCCTGCGCTGGTGATAGCATTTAAAGAAAAAGCGCCGGTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTAtt < 8:361997/133‑1 (MQ=255)
tCCTGGAGTCGTGTATTAAAGATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTa < 2:613388/140‑1 (MQ=255)
tCCTGGAGTCGTGGATTAAAGCTCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAATAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTa < 3:525182/140‑1 (MQ=255)
tCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTa < 3:707078/140‑1 (MQ=255)
tCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTa < 6:878465/140‑1 (MQ=255)
tCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGAGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTTTGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTa < 5:127245/140‑1 (MQ=255)
tCCTGGAGTCGTGGATTAAAGATCAGGGCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTAtt < 7:747085/138‑1 (MQ=255)
tCCTGGAGTCGTGGAGTAAAGATCAGGTGGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGTTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTa < 3:323163/140‑1 (MQ=255)
cTGGAGGCGCGGATTACAGCTCCGGGCGGTATTCCTGCGATGGTGAGAGCATATAAACAAAACGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAAGTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTACa < 3:85183/140‑1 (MQ=255)
gtgTCGTGGATTAATGATCAGGTCGGTTTTCGTGCGCTTGTGAGAGCATTTAAAGAAAAGGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTACAGCa < 3:23397/138‑1 (MQ=255)
gAGTCGTGGATTAAAGATCAGTTCGGTATGACTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCTTTCTGTGTCGAAAAAATGCCAGAACTGCCCTAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTACAGCa < 2:349907/140‑1 (MQ=255)
gAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTGGTGATAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTACAGCa < 2:284283/140‑1 (MQ=255)
gAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTACAg < 7:227513/138‑1 (MQ=255)
gAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTACAGCa < 2:314172/140‑1 (MQ=255)
gAGGCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCTTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTACAg < 7:433637/138‑1 (MQ=255)
gTCGTGTATTAAAGATCAGGTCTGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCACGAACTGGTTTACGACAGTTTGCGACATGGCAAGTATTTACAGCATa < 3:410690/140‑1 (MQ=255)
tCGTGGATTAAAGTTCAGTTCGGGATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTACAGCAt < 7:623362/138‑1 (MQ=255)
cGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTACAGCATAgt < 5:254798/140‑1 (MQ=255)
gTGGATTAAAGATCAGGTCGGTATTACTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTACAGCATAgtg > 6:474832/1‑140 (MQ=255)
gTGGATTAAAGATAAGGTCGGTATTACTGCGCTGGTGAGAGCATTTAAATAAAAAGCCCCCTTATGTGTCGCAAAAAATCCAGAACTGCCCGCACAGGTGTACGACAGTTTGCGCCAGGGCAAGTATTTAAAGCATAgtt > 3:169149/1‑139 (MQ=255)
ttAAAGATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTACAGCATAGTGTTGAt < 3:600703/140‑1 (MQ=255)
aaGATCAGGTCGGTATTACTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAAAGCCAGAACTGCCCGAACTGGTTTACGACAGTTAGCGCCAGGGAAAGTATTTACAGCATAGTGTTGATAAg > 1:638301/1‑140 (MQ=255)
gATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTACAGCATAGTGTTGATAAg > 8:796564/1‑138 (MQ=255)
cAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCTCCCGGGCAAGTATATACAGCATAGTGATGATAAGATTGc > 5:627975/1‑140 (MQ=255)
cAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTACAGCATAGTGTTGATAAGATTGc > 4:164276/1‑140 (MQ=255)
gTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGCCAGTTTGCGCCAGGGCAAGTATTTACAGCATAGTGTTGATAAGATTGCCcg > 5:411925/1‑140 (MQ=255)
gTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTACAGCATAGTGTTGATAAGATTGCCcg > 1:809694/1‑140 (MQ=255)
gTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTACAGCATAGTGTTGATAAGATTGCCcg > 5:866176/1‑140 (MQ=255)
gcGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTACAGCATAGTGTTGATAAGATTGCCcgc < 6:571817/139‑1 (MQ=255)
gTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAAc > 3:936473/1‑75 (MQ=255)
ttCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAAGGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTACAGCATAGTGTTGATAAGATTGCCCGCGAGCtt < 3:150302/140‑1 (MQ=255)
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AGTGCAGCCGCAACTGGTGTTACTCCAGAAAACCCTGCTCTACGTCGAAGGGGTAGGACGCCAGCTTTATCCGCAACTCGATTTATGGAAAACGGCGAAGCCTTTCCTGGAGTCGTGGATTAAAGATCAGGTCGGTATTCCTGCGCTGGTGAGAGCATTTAAAGAAAAAGCGCCGTTCTGGGTCGAAAAAATGCCAGAACTGCCCGAACTGGTTTACGACAGTTTGCGCCAGGGCAAGTATTTACAGCATAGTGTTGATAAGATTGCCCGCGAGCTT > NZ_CP022686/2807996‑2808272
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
