Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F2 I0 R1 252 7301.5 9636800 98.5% 9492248 135.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NZ_CP022686 1,547,113 G→C 21.0% intergenic (+25/‑9) CIW80_RS07710 → / → CIW80_RS07715 tRNA‑Met/tRNA‑Met

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0226861,547,1130GC21.0% 82.5 / 4.0 62intergenic (+25/‑9)CIW80_RS07710/CIW80_RS07715tRNA‑Met/tRNA‑Met
Reads supporting (aligned to +/- strand):  ref base G (36/11);  new base C (11/3);  total (47/15)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAGCTGCTATTGGCTTGCGGTTTTTTCG  >  NZ_CP022686/1546974‑1547252
                                                                                                                                            |                                                                                                                                           
aaCCAATACAAAATTGCTGTAGTAAAGCAGTACGGGGACGCGGGGTGGAGCAGCATGGTAGCGCGTCGGGCTCATAACCCGAAGGTCGTCGGTGCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCAg                                                                                                                                             <  5:745141/140‑1 (MQ=17)
          ctttttATGAAGTCACCCATTACCGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAATGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCAGTACGGTGa                                                                                                                                     <  2:868028/136‑1 (MQ=14)
            tttGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAATATTAGATGAAAAAAAGCACTACGGTgcctgg                                                                                                                                 >  6:355382/1‑135 (MQ=17)
               ctagcaGTAAACCAGTACGCTGAAGCGGGGTGGAGCAGCCTGTTAGCGCGGCGGGCTCATAACCCGAAGGGCGTCGGGTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAAAAAAGCAGTACGGTGACGCgggg                                                                                                                              <  5:1001145/135‑1 (MQ=14)
               catgaACTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTAGATGAATTAACGCAGTACGGTGACGCgg                                                                                                                                <  1:16246/137‑1 (MQ=14)
                atgaAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAATTTTGAGCAAAAAAAGCAGTACGGTGAGTCGGGGt                                                                                                                             >  5:1098517/1‑140 (MQ=17)
                  gaAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATGTGAGGTTATAAAGCAGAACGGTGAGGCGGGGt                                                                                                                             >  2:1155535/1‑138 (MQ=17)
                    attatcgCAATACTGTGACGCGTGGTGGACCAGCCTTGTCGCTCGGCGGGCGCATAAGCCGAAGGGCGGAGGGTCCAAACCGTCCCCCGCAACCAAT‑AAAAATTTCCTGAAATCACCCACTACGGTGACGCGGGGTGGag                                                                                                                         <  8:272271/134‑1 (MQ=2)
                    agacacgCAGTACGGTGACTCGGGGTGGAGCAGCATGGTAGCTCGTCGGTCTCATAACCCGAAGGTCGGCGGGGCAAATCCTGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGag                                                                                                                         <  5:131266/134‑1 (MQ=14)
                    aGTAACCCAGTTCGCTGACGCGGGGTGGAGCAGCATGGTAGCTCGGCGGCCTCATAACCCGAAGGGCGTCTGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAACGCAGTACGGTGACGCGGGGTgg                                                                                                                           <  1:85015/138‑1 (MQ=14)
                         aGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑GAATATTTGATGAGAAAAAGCGGTACGGTGCCGCGGGGTGGagctgac                                                                                                                    >  7:28169/1‑136 (MQ=14)
                             ttACGCTGACGCTGTTGGGAGCAGCAGTGTAGCTAGGCGGGCTCATATCCCGAAGGTCGTCTGTTCAAATCCTGCCCCCGCAACCAAA‑CAATTATTTTTGAAAACAAGCACTCCGGTGACGCGGGGTGGAGCAGCCTGGt                                                                                                                <  8:359032/139‑1 (MQ=9)
                              tACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCACCCAAT‑CAAAATTTTATGAAAAAAAACACTACGCTGACGCGGGCTTGAGCAGACTGGtt                                                                                                               >  5:117743/1‑139 (MQ=14)
                              tACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CTAAAATTGATGAAAAAAACCAGTACGCTGACGCTGGGTGGCGCAGCCTgcgt                                                                                                               >  5:818869/1‑137 (MQ=14)
                              tACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCACCGCAACCAAT‑CAAAATTAGATGAAAAAAACCACTACGGTGAAGCCGGGTGGagcagaatgcta                                                                                                               >  7:83163/1‑133 (MQ=14)
                                cGGTGACGCGGGGTGGAGCATCATGGTAGCTAGTCGGGCTCATAACCCGAAGGTCGACGGTTCAAATCCTGCCCCCGCAACCAAT‑ATAAATTTGTTCTATCAAACCAGTACGCTGCATCGGGGTGGAGCAGCTTGGTata                                                                                                             >  8:103103/1‑138 (MQ=11)
                                cGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑GAAAATTTGAGCTAAAAAACCAGTACGGTGCCGCGGGGTGGCGCTGCCTGGttgg                                                                                                             >  6:667646/1‑137 (MQ=14)
                                cGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTTAGCTTAGAAAGCGCAACGGTGACGCGGGGTGGCGctggctgggtgg                                                                                                             >  4:272236/1‑136 (MQ=14)
                                   tGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CTATATTTGTTCAAAAAAACCAGTACGGTGACGCTGGGTGGAGCAGCATGGTTGCtag                                                                                                          >  4:336994/1‑138 (MQ=11)
                                     aCGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CTAAATTTGATGAAAGAAAGCAGTACGGTGACGGGGGGTGGCGCAGCCTTGTAGCtcgtc                                                                                                        >  5:254997/1‑140 (MQ=14)
                                        cgGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑GAAATTTATTTGAAAAAAAGCGCAACGGTGACGGTGGGTGGCGCAGCCTGGTAGCTGGTCggg                                                                                                     >  8:967297/1‑140 (MQ=11)
                                        cgGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑AAAAATTTTATGAAAAAAAGCAGTACGGTGACGCTGGGTGGAGCAGCATGGGAGCTCGTCggg                                                                                                     >  6:90267/1‑140 (MQ=11)
                                          gggTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑AAATATTTGATGAGAGAAAGCAGTACGGTGACGGGGGGTGGAGCAGCCTGGGAGCTAGTCGGGcc                                                                                                   >  7:1116858/1‑139 (MQ=11)
                                                 gcagcaTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑AAATAATTGATGTAATAAAGCAGTAAGGTGCCGCGGGGTGGAGCAGCCTGGGAGCTAGTCGGGCGCATAAcc                                                                                            >  5:1109677/1‑140 (MQ=11)
                                                  cagcaTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑AAATATTAGATGAAAAAAAGCACTACGGTGAAGCGGGGTGGAGCAGCATGGTAGGTCGTCGTGCTCATAAc                                                                                             >  2:600785/1‑138 (MQ=11)
                                                     caTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCAGTAAGGTGCAGAGGGGTGGAGCAGACTGGTAGCTCGTCGGGCTCATAACCCGaa                                                                                        >  6:525821/1‑140 (MQ=14)
                                                     caTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑AAAAATTTTATGAAAAAAACCTCTACGGTGACGCTGGGTGGAGCAGAATGGTATCTAGTCGTGCGCATACCCGGaa                                                                                        >  8:1075900/1‑140 (MQ=11)
                                                     caTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGAAACCAAT‑AAAAAATTGATGAAATAAAACACAAAGATGCAGAAGGGTGGCGCAGACTTCTAGATCGTCGGGCTAATAAccagta                                                                                        >  4:76260/1‑136 (MQ=2)
                                                       tGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGATATAAAGCACTACGGTGACGCGGGGTGGAGCAGCATGGTATCTCGTCGGGCTCATAACCCGAAgg                                                                                      >  5:819348/1‑140 (MQ=255)
                                                          tAGCTCGTCGGGCTCATACCCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAAAAAAGCAGTACTGTGCATCGGGGTGGAGAAGCCTGGTAGATAGGCGGGCTCATACCCCTAACgtcg                                                                                   >  6:733763/1‑140 (MQ=11)
                                                          tAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCCACCAAT‑CAATATTTGTTGTAATAAACCAGTAAGGTGACGAGGGGTGGAGCAGCCTGGTATCTTGTCGGGCGAATAACCCGAAGgtcg                                                                                   >  3:326680/1‑140 (MQ=11)
                                                           tgCTCGTCGGTCTAATATCCCGAAGGTCGTCGCTTGTAATCATTAACCCGCAACCAAT‑AAAATATTTAAGAAATATCGCAGTACGCTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGgtcgt                                                                                  <  8:10708/139‑1 (MQ=2)
                                                             cTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑GTATATTTGATGTTAAAAAGCGGTACGGTGCCGGTGGGTGGAGCTGGCTGGTTGCTAGGCGGTCTGTTAACGGGAAGgtcggcc                                                                                >  7:1121535/1‑137 (MQ=2)
                                                             cTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑GAATATTTGATGATAAAAAGCAGTACGGTGAGGCGGGGTGGAGCTGCCTGGTTGCTGGTGGGGCTGATCCCCCGAAGGtggtcg                                                                                >  5:1124473/1‑140 (MQ=11)
                                                             cTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCACAACGGTGAAGAGGGGTGGAGCATCCTTGTAGCTAGACGGTCTCATACCCAGAACGtcgtcg                                                                                >  3:1095371/1‑140 (MQ=11)
                                                               cgtcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑GAAATTTTGTTGAAACAAAGCCCTACGGTGCCGAGGGGTGGCGCAGCGTGGTTGCTAGACGGTCACATCACCAGAAAGTCGTCggg                                                                              >  8:707355/1‑139 (MQ=2)
                                                               cgtcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCTAAGGTCGTCGGt                                                                              >  3:1224817/1‑140 (MQ=37)
                                                                ttctggCTCATAACCCGAAGGTCTGCGGTTCTTATCCGGCCCCCGCAACCAAT‑CAAAATTTTATGAATAAAACGATTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGtt                                                                             <  5:527739/136‑1 (MQ=11)
                                                                 tcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGTTGAAATAAAGCAGTACGGTGAAGCGGGGTGGAGCAGCCTGGTATCTAGTCGGGCTCTTAACCCGTAGGTCGTCGGt                                                                              >  1:372002/1‑138 (MQ=11)
                                                                      cTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCCGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGTAGGTCGTCGGTGCAAAta                                                                       >  3:791830/1‑139 (MQ=255)
                                                                      cTCATAACCCGAAGGTAGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑AAAATTATAATGAAATAAACAAGTAATGTGACGCGGGGTGGAGCATCCTGGTAGATCTTCGGGCACAAAACCATAACGTCGTCGGTTGAAGTc                                                                       >  7:342036/1‑140 (MQ=2)
                                                                               cGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATACCCCGAAGGTCGTCGGTTCCACTCCGGCCCCCg                                                              >  3:990502/1‑140 (MQ=255)
                                                                                 aaGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAATTTTCATGAAATAAAGCAGTACGGTGACGCTGGGTGGAGCAGACTGGTTGCTCTTCCTGCGCATAACCCGAAGGTCGTCGGTTCAAATACGGGCCCCGcg                                                            >  8:1103987/1‑139 (MQ=11)
                                                                                   ggTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCAGGACGGTGACTCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCTGCGGGTAAGCTCCGGCCCCCGcc                                                            >  1:580552/1‑137 (MQ=11)
                                                                                     tcgtcgGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAAAAAAGCAGTACGGTGACTCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTAATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCaaa                                                          >  1:1160739/1‑137 (MQ=255)
                                                                                       gtcgGTTCAAATCCGGCCCCCGCAACCAAT‑CAATATTTGATCAAAAAAAGCAGTACGGTGACTCGGGGTGGAGCAGCCTTCTAGCTCGTCGGGCGCATAACCCGTCTGTCGTGCGTTAAAATCGGGCGCACGCAAACAAt                                                      >  8:721859/1‑140 (MQ=11)
                                                                                       gtcgGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTAGATGAAAAAAAGCAGTCCGGTGACGAGGGGTGGAGCTGCCTGGTAGCTAGCCGGGCGCATACCCCGTAGGTCGTCGGTTCGAATCCGGCCCCCGCTACCatt                                                      >  6:784254/1‑138 (MQ=11)
                                                                                        tctgatCAACTCCGGCCCCCGCAACCATT‑AAAACTTAGATGAATTAAACCACTACTGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAtt                                                     <  6:128291/135‑1 (MQ=11)
                                                                                        tcgGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTAAAATCAGGCACCCGCAACCAAtt                                                     >  4:606593/1‑140 (MQ=255)
                                                                                          ggTTCAAATCCGGCCCCCGCAACCAAT‑AAAAAATTGTTCAAAAAAACCAGTACGGTGACGCGGGCTGGCGCAGAATTGTATCTCGTCGTGCGAATAACGCGAACGTCGACGGTTAAAAACCGGCACCCCCCAACAAtt                                                     >  2:403647/1‑138 (MQ=2)
                                                                                            ttCAAATCCGGCCCCCGCAACCAAT‑CAATATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGCGCAGCCTGGTAGCTCGTCGGGCTCTTAACCCGAAGGTCGTCGGTTCAAATCCGGCGCCCGCCACCAATttatt                                                 >  3:20783/1‑140 (MQ=14)
                                                                                             gtcaaTCCTGCCCCCGCAACGAATACTAAAGCTG‑TGAATTTACGGAGTCCGGTGACGCGGGGTGGAGCAGCCTGGGAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATttatta                                                <  6:438403/137‑1 (MQ=14)
                                                                                                        ccccGCAACCAAT‑CAAAATTAGATGAAATAAAGCAGTACGGTGACGCgg                                                                                                                                <  2:316527/49‑1 (MQ=255)
                                                                                                        ccccGCAACCAAT‑CAAAATTAGATGAAATAAAGCAGTACGGTGACGCgg                                                                                                                                >  1:316527/1‑49 (MQ=255)
                                                                                                              aaCCAAT‑CAATCTTTGATTAACTGAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGc                               <  5:271319/140‑1 (MQ=17)
                                                                                                               cccAAA‑CATACTTGGATGAAATCAAGCCGTCCCGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCa                              <  4:393089/139‑1 (MQ=17)
                                                                                                                gctaT‑CATAATTTGATTAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCaa                             <  3:547997/137‑1 (MQ=255)
                                                                                                                   aT‑CAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCACCCAATTTATTAGAATGCTGACAAACCGCAAAgc                          >  6:560329/1‑140 (MQ=255)
                                                                                                                   aT‑CAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAgc                          >  4:858867/1‑140 (MQ=255)
                                                                                                                   aT‑CAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAgc                          >  8:709967/1‑140 (MQ=255)
                                                                                                                      cAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAgc                          >  1:780511/1‑138 (MQ=255)
                                                                                                                             tgatgaAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAACTCCGGCCACCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAGCTGCTATTgg                 >  6:70521/1‑140 (MQ=255)
                                                                                                                              gatgaAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTTACAAACCGCAAAGCTGCTATTggg                >  6:1076574/1‑139 (MQ=255)
                                                                                                                                            gTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAGCTGCTATTGGCTTGCGGTTTTTTCg  >  6:1083791/1‑140 (MQ=255)
                                                                                                                                            |                                                                                                                                           
AACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAGCTGCTATTGGCTTGCGGTTTTTTCG  >  NZ_CP022686/1546974‑1547252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A