Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F2 I0 R1
|
252 |
7301.5 |
9636800 |
98.5% |
9492248 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,196,276 |
T→G |
12.1% |
E15D (GAA→GAC) |
holA ← |
DNA polymerase III subunit delta |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,196,276 | 0 | T | G | 12.1%
| 323.2
/ 3.6
| 190 | E15D (GAA→GAC) | holA | DNA polymerase III subunit delta |
| Reads supporting (aligned to +/- strand): ref base T (48/103); new base G (26/2); total (83/107) |
| Fisher's exact test for biased strand distribution p-value = 8.80e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 193 total aligned reads displayed.
TCCAGTCGGTGTTGGGATCAATGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAACGAATATCCGCAGCACG > NZ_CP022686/4196137‑4196415
|
tCCAGTCGGTGTTGGGATCAATGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCt < 8:25893/140‑1 (MQ=255)
ccAGTCGGTGTTGGGATCAATGGAAACAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGATTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCtt < 7:909410/140‑1 (MQ=255)
gtgtTGGTATAAATGTAAAACGTGTGGTGTTCTTCTAACCCTTGAGCCGCAGCGACCTGACGACCAGCGTCCTGGCTTTCCTGCAATAACCGAGGATCGTTACCAAGAAAAACATACGCCGCGCGCAGCCCTTCATTg < 1:1070811/138‑1 (MQ=255)
gtTGGTATCATTGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCt < 6:716189/140‑1 (MQ=255)
gATCAATGGAAACAGTGGGGTGTTCTTCGATCCCTTGAGGCGCAGCGACCTGCCGACCAGCGTCCTGGCTTTCCTGCATTAACAGAGGCTCGTTCCGAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTgcgcg < 6:282500/140‑1 (MQ=255)
gATCAATGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCCCCGCCCGTCAATGAGCTgcg > 1:234274/1‑138 (MQ=255)
gATCAATGGAAAAAGTGTGGTGGTCATCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTgcgcg < 7:577196/140‑1 (MQ=255)
gATCAATGGAAAAAGGGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTgcgcg < 6:598528/140‑1 (MQ=255)
caTCCATGGAAAAAGGGTCGTGTTCTTCGACCCCTTGAGCCGCAGCTACCTGACGCACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTtcgcg < 8:374539/139‑1 (MQ=255)
aaTGGAAAAAGTGTGGTGTTCTTCGCACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCCCACCCCATGAATTAGCTGCGCGCCGa > 3:328532/1‑140 (MQ=255)
aaTGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCCGCCCCAGAATGAGCAGCGCGCggc > 3:770739/1‑139 (MQ=255)
aaTGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCCGCCCATAAATGAGCAGCGCGCggg > 6:837515/1‑139 (MQ=255)
aaTGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGGCCTTCCATGTGCGgcgggcggg > 5:1146724/1‑139 (MQ=255)
aaTGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGGGCGCggc > 5:553118/1‑139 (MQ=255)
aaTGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCAATGAGCTGCCCGCggc > 8:732238/1‑139 (MQ=255)
aaTGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTAATTGAGCTGCGCGCGGa > 3:543183/1‑140 (MQ=255)
aaTGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCGTCATTGAGCGGCGCGCggc > 3:46334/1‑139 (MQ=255)
aaTGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCATCATTGAGCTGCGCGCggg > 8:656749/1‑139 (MQ=255)
aaTGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCCCCTCCCGTCAATTCGCTGCGCGCggc > 4:218132/1‑139 (MQ=255)
aTGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCCCAGCGACCTGACGACCAGCGTCCTGGCCTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAACATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAg < 7:875549/140‑1 (MQ=255)
aTGGAAAAAGTGTGGGGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAg < 7:732238/140‑1 (MQ=255)
ggAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAgtt < 4:1229085/140‑1 (MQ=255)
aaaaaGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGCCGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTTCCAAGTAAAAGATACGCCGCGCGCCGCCCGTCATTGCGCGGGGGGCGGGgttgt > 5:766786/1‑140 (MQ=255)
aaaaGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAgttgtt < 3:934750/140‑1 (MQ=255)
aaaaGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAgttgtt < 7:339855/140‑1 (MQ=255)
aaaGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTTAGCGGCGCGCggctttgg > 1:788470/1‑132 (MQ=255)
aaGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTcc < 4:1154069/140‑1 (MQ=255)
aGTGTGGTGTTCTTCGAACCCTTGAGCCTCAGCGACCTGACGCACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCAGCGCGCCGCCCTTCATTAACCTGCGCGCGGAGTTGTTc > 2:47252/1‑138 (MQ=255)
aGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGCGCTGCGCGCGGAgttgtta > 2:558009/1‑137 (MQ=255)
ggtggtgGTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCggg < 8:416907/139‑1 (MQ=255)
gttgagtTCTTCGAACCCTTGAGCCGCAGCGACCTGACGCACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCGGCGCGCGGAGTTGTTCCGGGt < 7:376593/135‑1 (MQ=255)
gtTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAAc < 4:1211288/140‑1 (MQ=255)
ttcttcGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCCGCCCATGATTGAGCTGCGCGCGGACTTGTTACGGGTACAAcc > 7:1052299/1‑140 (MQ=255)
ttcttcGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACaa < 1:590002/138‑1 (MQ=255)
cGAACCCTTGAGCCGCAGCTACCTGACGAACAGCGTCCTGTNTATACTGCAATAACAGATGATCGTTACCAAGTAAAAGATACGCCNCGCGCAGCCCTTCATTGAGCTGCGCGCGGANTTGTTCCGGGTACAACCGAatc < 5:287802/140‑1 (MQ=255)
cGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGaa < 2:46606/138‑1 (MQ=255)
cGAACCCTTGAGCCGCAGCGACCTGACCAACAGCGTCCTGGCTTTCCTGCAATAACAGATTATCGTGACCAAGTAAAAGATACTCCGCGCGCCGTCCTTGCTAGTGCTGCCCGCGGCGTGGTTCCCGGTACAGCCgcaag > 8:584007/1‑136 (MQ=255)
cGAACCCGTGCGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGaa < 2:96617/138‑1 (MQ=255)
aaCCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAatc < 2:435456/138‑1 (MQ=255)
aaCCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCGGGCTTTCCTGCAATAACAGCGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAatc < 1:534909/138‑1 (MQ=255)
aCCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGATTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAACTGCGCCCGGAGTTGTTACGGGTACAACCGAatcata > 8:878900/1‑139 (MQ=255)
ccTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGCGTTTTTACGGGGACAACCCAatcaaa > 2:515570/1‑136 (MQ=255)
ccTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAatcatc < 2:831782/138‑1 (MQ=255)
ccTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCCCAGCCCATCATTGAGCGGCGCGCGGAGTGGTTCCGGGTACAACCGaataataaa > 5:551246/1‑137 (MQ=255)
ccTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGATACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAg < 3:12874/140‑1 (MQ=255)
ttGAGCCGCAGCGCCCTGACGAACAGCGTCCTGGCTTTCCTGCAATACCAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAACTGCGCGCGGAGTTGTTCCCGCTTCAAACGAatcataaagt > 4:645646/1‑135 (MQ=255)
ttGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGtt < 4:147099/140‑1 (MQ=255)
ttGAGCCGCAGCGACCTGACGAACAGCGTCCAGGCATTCCTGCAATAACATATGATCGTTACCAAGTAAAAGATACGCCGCGCGCCGCCCTTCAAGGACCAGCTCTCGGAGATGTTCCGGGGCCAACCGCaacatccgat > 4:829139/1‑136 (MQ=255)
tGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCCGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGttt > 4:483942/1‑139 (MQ=255)
tGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCCCCCCCCTTAATTGGGGAGCGCGCGGCGTTGTTAAGGGGTCAACCGCATCATAAggtt > 5:788544/1‑137 (MQ=255)
aGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTAcc < 6:977269/140‑1 (MQ=255)
aGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTAcc < 5:256235/140‑1 (MQ=255)
cAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCCGCCCTTCATTGAGCTGCGCGCGGAGTTGTTGCGGGGAGAACCGAATCATCATTTACCCAGCg > 8:1033125/1‑140 (MQ=255)
cAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCCGCCCGTCATTGGGCTGCGCGGGGGGGTGTTTCGGGGGCAACCGCAAAATCAGGTAacccccc > 7:247575/1‑136 (MQ=255)
cAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCg < 8:1107779/140‑1 (MQ=255)
cAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCGTAATTGAGCGGCGCGCGGAGTTGTTCCGGGTTCAACCCTATCAAAAGTTACCCAGCg > 8:1082913/1‑140 (MQ=255)
gCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACTCCGCGCGCAGCCCTTCATTGAGAAGCGCGCGGAGTTGTTCCGGGTGCAACCGAATCATCAGTTAACCAGCg > 2:584198/1‑138 (MQ=255)
aCCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCCGCCCTTCATTGAGCTGCGCGCGGAGTTGTTACGGGTTCAACCGATTCATCAGTTACCCAGCgggggg > 6:965782/1‑138 (MQ=255)
aCCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCgtggtg < 5:974612/140‑1 (MQ=255)
cTGACGAACAGCGTCCTGGCTTTCCTGCACTAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGga < 4:962485/140‑1 (MQ=255)
cTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCgtggtg < 1:731752/138‑1 (MQ=255)
tGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGtggtgg < 1:1129923/138‑1 (MQ=255)
gACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGgaga < 4:456441/140‑1 (MQ=255)
caccGTCCTGGCTTTCCTGCAATACCAGAGGATCGTTACCACGTAACAGATCCGCCGCGCGCAGCCCGTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGACTCATCAGTTACCCAGCGTGGTGGAGACGCGTg < 4:540396/137‑1 (MQ=255)
cAGCGTCCTGTCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCATCCCTTGATTGAGCTGCGCGAGGAGTTGTTACGGGTACAAACGCATAATCCGATACCCAGCGGTGGGGAGACGCGTg > 6:378253/1‑140 (MQ=255)
cAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCCTTGAGCTGCGCGCGGAGTTGTTCCGGGTACACCCGACTCATCAGTTACACAGCGTGGTGGAGAcgcggg > 3:484343/1‑138 (MQ=255)
cAGCGTCCTGGCTTTCCGGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCAATGAGCTGCGCGCGGAGTTGTTCCGGGGACCAACGAATCCTAAGATACCCCGCGTGGGGGAGCCGCGTg > 7:82606/1‑140 (MQ=255)
gtacttgCTTTCCTGCAATAACATAGGATCGATACCAATGAAAAGATACTCCGCGCGCAGCCGTTCATTGTGCGGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTTGAGACGCGTGCAgg < 5:427343/134‑1 (MQ=255)
gTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCa < 2:1052375/138‑1 (MQ=255)
gTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAgg < 3:1010005/140‑1 (MQ=255)
tCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCGTCATTGAGCTGCGCGCGGAGTTGTTCCGGGGTCAACCGAATCATCAGGTACCCAGCGGGGGGGAGCCGCGTGCCggg > 3:266257/1‑139 (MQ=255)
tCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGACCTTCAATTAGCTGCGCGGGGAGTTGTTACGGGTACCACCGAATCATAAATTACCCACCGGGGTGGAGACCCGTTCAGGc > 5:945621/1‑140 (MQ=255)
gCTTTCCTGCCATAACAGAGGATCGTTACCTAGTAAAACATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGGTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGc < 6:891102/140‑1 (MQ=255)
ttCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGcc < 2:418331/138‑1 (MQ=255)
ttCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCgg < 5:837515/140‑1 (MQ=255)
ttCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCgg < 6:534969/140‑1 (MQ=255)
ttCCTGCAATAACAGAGGAGCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCgg < 4:890953/140‑1 (MQ=255)
tgccTGCAATAACACAGCATCGTTACCAAGTAAACGATACGCCGCGCGAAGCCCTTCATTTCCCGGCGCGCGGAG‑TGGTCCGGGTACACCCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCg < 2:215395/136‑1 (MQ=255)
tCCTGCAATAACAGAGGATCGTTACCCAGTAACAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGa < 3:844941/140‑1 (MQ=255)
ccTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCCGCCCTTCAATGAGCTGAGCGCCGAGTTGTTGCGGGTACAACCAAATCAAAAGTTACCCAGCGGGGTGGAGCCGCGGGCAGGCGTGGCCCGAg > 3:1049031/1‑140 (MQ=255)
ccTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCCGCCCGTCAATTAGCTGCGCGCGGCGTTGGTCCCGGGACAACCGCATGCACAGTATCCCCGCGTGGTTGAGCCGCGAGGCGGCGTAGCCggcg > 8:515998/1‑138 (MQ=255)
ccTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGGTGCGCGCGGAGTTGTTCCGGGTACAACCGAATAATCAGTTAACCCGCGTGGTGGAGACGCGTGCAGGCGTTTCCGGAg > 8:123429/1‑140 (MQ=255)
ccTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTAACCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAg > 4:306412/1‑140 (MQ=255)
aTAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATc < 1:657950/138‑1 (MQ=255)
tAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATcc < 1:346964/138‑1 (MQ=255)
aCAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGt < 1:682466/138‑1 (MQ=255)
ggATCGTTACCAAGTAAAAGAAACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTgg < 2:780237/138‑1 (MQ=255)
ggAGCGTTACCAAGTAAAAGATACGCCGCGCGCCGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAAACGAATCATCAGTTACCCAGCGTGGTGGATACGAGTGCAGGAGTTTCCGGCGTATACGGTGTGGTc > 3:663162/1‑140 (MQ=255)
gATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCACCGTGGTGGAGACGCGTGCATGCGTTGCCGGAGTATACGGTGTTGTCg > 8:452808/1‑140 (MQ=255)
cGTTACCAAGTAAAAGATACGCCGCGCGCCGCCCTTCATTGCGCGTCGCGCGGAGTTTTTCCGGGTACAAACGAATGATCAGTTACCCAGCGGGGTGGAGACGCGGGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACg > 6:1071447/1‑140 (MQ=255)
aCCAAGTAAAAGATACGCCGCGCGCCGCCCGGCATTTAGCAGCGCGCCGGGGTGTTGCGGGGACAAACCCATCATCCGATAACCCACGGGGTGGAGTCGCGGGCCGGCGGGGCCGGCGGATCCCGTGTGGGCgcgccg > 2:415492/1‑133 (MQ=255)
tAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGTGACGCGGGCCGGCGGTGCCGGAGTATCCGTTGTGGTCGACGGCTGttat > 2:291459/1‑136 (MQ=255)
agctACGCCGCGCGCAGCCCGTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTtcgtcg < 5:1013396/137‑1 (MQ=255)
aCGCCGCGCGCCGCCCTTAATTGGGCTGCGCGCGGAGTTGTTACGGGTACAACCGAATCATCAGTTACCCCGCGTGGTGGGGAAGCCTGCCGGCGTTGCCGGAGTAAGCGGTGGGGGCGGCGGCTGGTCTTCGTCgggaa > 4:112917/1‑137 (MQ=255)
gccgcGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTAAAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAACGa > 4:1165314/1‑140 (MQ=255)
cgcgcgCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTCCAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAACGAat < 5:578580/140‑1 (MQ=255)
gcgcGGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAACGAata < 2:307854/138‑1 (MQ=255)
gcAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAACGAATATCCg < 7:1010530/140‑1 (MQ=255)
cAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAACGAATATCCgc < 7:950109/140‑1 (MQ=255)
ttCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGGGGAGACGCGTGCAGGCGTTGCCGGAGTATCAGTTGTGGTCGACGTCTGTTCTTCGTCGGCACGAATATCCGCAGCACg > 6:232003/1‑140 (MQ=255)
|
TCCAGTCGGTGTTGGGATCAATGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAACGAATATCCGCAGCACG > NZ_CP022686/4196137‑4196415
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
