Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F13 I0 R1
|
235 |
6960.4 |
9135780 |
98.4% |
8989607 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,196,276 |
T→G |
16.1% |
E15D (GAA→GAC) |
holA ← |
DNA polymerase III subunit delta |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,196,276 | 0 | T | G | 16.1%
| 332.9
/ 9.6
| 202 | E15D (GAA→GAC) | holA | DNA polymerase III subunit delta |
| Reads supporting (aligned to +/- strand): ref base T (39/114); new base G (35/2); total (86/116) |
| Fisher's exact test for biased strand distribution p-value = 3.04e-15 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 203 total aligned reads displayed.
TCCAGTCGGTGTTGGGATCAATGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAACGAATATCCGCAGCAC > NZ_CP022686/4196137‑4196414
|
gtgtTGGGATCAATGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCCCCCCCCATCAATGAg > 2:580292/1‑140 (MQ=255)
gtTGGGATAACTGGATAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTGCCTGCAATAACAGAGGAGCTTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCt < 2:909782/140‑1 (MQ=255)
gATCAATGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTgcgcg < 2:745384/140‑1 (MQ=255)
gATCAATGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTgcgcg < 7:1032876/140‑1 (MQ=255)
gATCAATGGAAAAAGTGGGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTgcgcg < 8:420250/140‑1 (MQ=255)
caTCAATGGAAACAGTGTCGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCCTCCTGGCTTTCCTGCAATAACAGTGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTgcg < 3:1019099/137‑1 (MQ=255)
tCAATGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGCTCGTTACCAAGTAAAAGATACGCCGCGCGCACCCCGTCATTGAGCAGggcgcg > 6:501699/1‑140 (MQ=255)
aaTGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTTAGCAGCGCGCggg > 2:1005080/1‑139 (MQ=255)
aaTGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCggc > 1:650914/1‑139 (MQ=255)
aaTGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGa > 2:449116/1‑140 (MQ=255)
aaTGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCGTCATTGAGCTGCGCGCGGa > 1:1001005/1‑140 (MQ=255)
aaTGGAAAAAGTGTGGTGTTCTTCGAACCCGTGAGCCGCAGCGACCTGACGACCAGCGTCCTGGCTTTCCTGCATTAACAGCGGATCGTTCCCCAGTAAAAGATACGCCGCGCCCCGCCCGTCAATGGGCTGCGCGCggg > 5:520189/1‑139 (MQ=255)
aaTGGAAAAAGTGTGGTGTTCTGCGAACCCTTGAGCCGCAGCGCCCTGCAGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCCGACCTTCAATTCGCTTCGCGAggg > 5:615551/1‑139 (MQ=255)
aTGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCgg < 4:259458/138‑1 (MQ=255)
aTGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCgg < 4:1005067/138‑1 (MQ=255)
tGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCCGCCCTTCATTGAGCGGCGCGCggc > 3:679634/1‑137 (MQ=255)
tGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCCGCCCGTAATTGGGCAGCGCGCggg > 3:6115/1‑137 (MQ=255)
tGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCggc > 3:16994/1‑137 (MQ=255)
tGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGa > 4:935897/1‑138 (MQ=255)
tGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAgt > 7:805716/1‑140 (MQ=255)
tGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCGTCATTGAGCGGCGCGCggg > 4:146200/1‑137 (MQ=255)
tGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCCCAGCCCGTCGTTTAGCTGCGCGCggg > 3:380868/1‑137 (MQ=255)
gAAAAAGTGTGGTGTTCTTCGAACCCTTGCGCCGCAGCGACCTGACGACCAGCGTCCGGGCTTTCCTGCACTAACAGAGGATCGTTACCTAGTAAAAGATACGCCGCGCGCAGCCCGTCAGTGAGGGgcgggcggggg > 3:7821/1‑135 (MQ=255)
aaatgggtggtgTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAgttgtt < 8:1020881/134‑1 (MQ=255)
aaaaGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAgttgtt < 5:685875/140‑1 (MQ=255)
aaaaGTGTGGTGTTCATCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAgttgtt < 1:523511/140‑1 (MQ=255)
aaaGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGAAAAAGATACGCCGCGCGCCGCCCTTCATTGAGCTGCGCGCGGAGTTGTTc > 2:131547/1‑140 (MQ=255)
aaGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTcc < 8:563830/140‑1 (MQ=255)
tgtgGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGCCGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCggg < 8:971975/140‑1 (MQ=255)
gtggtgTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCGTCATTGAGCTGCGCGCGGAGTTGTTCCGGGt > 6:710468/1‑140 (MQ=255)
gtggtgTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCGGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCCGCCCTTCATTGGGCTGCGCGGGGAGGTGTTCCgggg > 5:895252/1‑139 (MQ=255)
tggtgTGCTTCGAACCCTTGAGCCGCAGCGACCGGAAGAACAGAGTCCTGGCTTTCCTGCAATAACAGCGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTa < 8:714253/140‑1 (MQ=255)
tggggTGCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGAGCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTa < 7:357497/140‑1 (MQ=255)
ggtgTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCGTCATTGAGCTGCGCGCGGAGGTGTTCCGGGt > 4:806951/1‑138 (MQ=255)
gtTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACa < 3:8456/138‑1 (MQ=255)
gtTCTTCGAACCCTGGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACa < 4:341078/138‑1 (MQ=255)
cttcGAACCCTTGAGCCGCAGCGCCCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACAAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGTTACAACCGa > 8:632039/1‑140 (MQ=255)
ttcGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGaa < 5:219842/140‑1 (MQ=255)
ttcGAACCCTTGACCCGCAGCGACCTGACGAACAGCGTCTTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCCCGCTCCGCCCATCAATGATCACCGCGCGGAGGTGTAACCGGTACAACCgca > 2:72280/1‑138 (MQ=255)
ccaccccTTGCGCCGCATCGACCCGCCGAACAGCGTCCGGGCTTTCCTGCAATAACAGAGGATCGTCACCAAGTAAACGATACGCGGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGaa < 4:89451/134‑1 (MQ=255)
cGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAatc < 1:407872/140‑1 (MQ=255)
cGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAatc < 8:805716/140‑1 (MQ=255)
cGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAatc < 6:754731/140‑1 (MQ=255)
cGAACCCTTGAGCAGCAGCTAGCTGACGAACAGCGTCCTGGCTTTGCTGCAATCACTGCTGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAatc < 2:687722/140‑1 (MQ=255)
caCCCGTGAGCCGAAGCGACCTGACGAACAGAGTACTGGCTTTCCTGCAATAACATAGGATAGTTACCAAGTAAAAGATACGCCGCTCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAatcat < 7:162654/139‑1 (MQ=255)
aaCCGTTGAGCCGCATCGACCTGACGAACATCGTCGATGCTTTCCTGCAATAACAGCGGATCGTTACCAAGTAAACGATACGCCGAGCGCAGCCCGTCATTGAGCGGCGCGCGGAGTTGTTCCGGGTAGAACCGAatcat < 6:484626/140‑1 (MQ=255)
aCCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCCGCCCGTCAATGAGCTGCGCGCGGCGTTGTTCCGGGTACAACCGaataata > 1:1156106/1‑139 (MQ=255)
aGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTAcc < 8:878285/140‑1 (MQ=255)
cAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCg < 5:436985/140‑1 (MQ=255)
cAGCGACCTGACGAACAGCGGCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCg < 7:881753/140‑1 (MQ=255)
cAGCGACCTGACGAACAGCATCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAg < 3:311781/138‑1 (MQ=255)
cAGCGACCTGACGAACAGAGTCCTGGCGTTCCTGCAATAACAGAGGATCGATACCAAGTAAAAGATCCGACGCGCGCACCCCTGCATTGAGCTGAGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCg < 5:579621/140‑1 (MQ=255)
gCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGGAGCCCGTCAGTGAGCTGCGCGCGGTGGTGTTCCGGGTACAACCGCAGCATCAGTTGCCCAGCg > 4:996498/1‑138 (MQ=255)
gCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCTGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACAGAATCATCAGTTACCCAGCg > 3:271719/1‑138 (MQ=255)
gCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCGTCATTGAGCGGCGCGCGGAGTTGTTACCGGTACAACCCCATAATAAGTTACCCAGCg > 4:373237/1‑138 (MQ=255)
cTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGga < 7:334623/140‑1 (MQ=255)
tGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGTATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGgag < 7:37798/140‑1 (MQ=255)
gACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGga < 3:1024910/138‑1 (MQ=255)
aCGAACAGCGTCCTGGCTTTCCTGCAATACCAGAGGATCGTGACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCCTTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGAc < 7:567067/140‑1 (MQ=255)
aCGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGCTCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGAc < 1:748779/140‑1 (MQ=255)
aCGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGAc < 2:1073166/140‑1 (MQ=255)
cAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCGTAATTGAGCTGCGCGCGGAGGTGTTACGGGTTCAACCCAATCATAAGTTAACCACCGTGGTGGGGCcgcggg > 5:408038/1‑138 (MQ=255)
tCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCCGCCCGTCATTGAGCGGCGCGCGGAGTTGTTACGGGTACCACCGAAGCATCAGTTACCCCGAGGGGTGGTGCcgcggggcggc > 6:956519/1‑133 (MQ=255)
ccTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGAAACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCg < 6:979720/140‑1 (MQ=255)
ggCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGt < 4:874372/138‑1 (MQ=255)
gCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAACGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGc < 1:122876/140‑1 (MQ=255)
gCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGtt < 3:1083794/138‑1 (MQ=255)
gCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGc < 1:809462/140‑1 (MQ=255)
gCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGc < 1:834992/140‑1 (MQ=255)
ttCCTGCAATAACAGAGGATCGTAACCAACTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGGTGCCgg < 2:389146/140‑1 (MQ=255)
tCCTGCAATAACAGAGGATCGTTACCCAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGa < 2:140683/140‑1 (MQ=255)
tCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGa < 7:367209/140‑1 (MQ=255)
tCCTGCAATAACAGAGGATCGTTACATAGTAAAATTTACGCCGCTCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCg < 4:627510/138‑1 (MQ=255)
ccTGCAATAACAGAGGATCGTTACCAAGTAAAATATACGCCGCGCGCAGCCCCTCATTGAGCAGCGCGCCGAGGTGTTCCGCGTACCACCGCATCAACACTTACCCACCGGGGGGGAGACGGCTGCCGGCGTTGccag > 4:691304/1‑136 (MQ=255)
ccTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCCGTTACCCCGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAg > 8:904457/1‑140 (MQ=255)
cTGCAATACCAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGt < 6:575826/140‑1 (MQ=255)
cTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCGTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCCCCGTGGGGGAGACGCGTGCAGTCCTTGCCGGa > 4:1025333/1‑138 (MQ=255)
gCAATATCAGAGTATCGTTACCAAGTAATAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGAGGAGTTGTTCCGGGTACAACCGAATGATCAGTTACCCAGCGTGGTGGTGACGCGTGCAGGCGTTGCCGGAGTAt < 6:355571/140‑1 (MQ=255)
aaTAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCATCATTGAGCGGCGCGCGGCGGTGTTCCGGGTTCACCCGAATCCTCAGTTTCCCAGCGTGGGGGTGCCGCGTGCAGGCGGGGCCGGGGttaac > 1:457816/1‑136 (MQ=255)
agagGATCG‑TACCAAGTGAAAGATACGCCGCGCGCAGCCCGTCATTGAGCTGCGCGCGGGGTTGTTCCGGGTTCAACCGAATCATCAGTTACCCAGCGTGGTGGGGCCCCGGGCAGGCGTTGCCGGTGTATGCGTtgt > 4:184034/1‑138 (MQ=255)
ggATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCGGCAATGAGATGCGCGCGGAGTTGTTCCGGGTACAACCGAAAACTCAGGTACCCAGCGTGGTGGTGACGCGTGCCGGCGGTGCCGGGGTGTCCGTTGTGGtg > 8:1061365/1‑139 (MQ=255)
gATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCGTCATTGAGCTGCGCGCGGGGTTGTTGCGGGTACAACCGACTAATCAGTTAACCAGCGTGGGGGAGCCGCGTGCCGGCGTTGCCGGCGTATCCGTTGGGGTCg > 2:62768/1‑140 (MQ=255)
cGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCGTGATTGAGCTGCGCGCGGAGTTGTTACGGGTACAACCGAATCATCAGGTACCCCGCGTGGTGGGGCCGCGTGCAGGCGGTGCCGGAGTATACGTTGTGGTGGACg > 2:556466/1‑140 (MQ=255)
tACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTTAGCTGCGCGCGGAGTTGTTCCGGGTACCAACGAATCATAACTTTACCAGCGTGGGGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGtgt > 8:299764/1‑138 (MQ=255)
cAAGTAAAAGATACGCCGCTCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGtt < 8:691210/140‑1 (MQ=255)
aGTAAAAGATACGCCGCGCGCACCCCATCATTGAGCTTCGCGGGGAGTTGTTACCGGGAGCACAGAAACATCAGGTACCCACCGGCGGGGAGACTCGTGCCGGCGATGCGCGCGTAACCCGTGGTGTCGCCGTCTGttct > 6:1084702/1‑140 (MQ=255)
gTAAAAGATACGCCGCGCGCCGCCCGGGATTTAGCAGCGCCCGGAGTTGTTGCGGGTACAACCGCATCATCAGTTTCCCAGCGTGGGGGGGACCCGTGCAGGCGGTGCCGGAGTATACGGTGTGGGTGACGTATGttatt > 8:947324/1‑140 (MQ=255)
tACGGCCCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGaa < 2:96735/140‑1 (MQ=255)
tACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGaa < 2:117758/140‑1 (MQ=255)
tACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGaa < 8:276989/140‑1 (MQ=255)
tACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGaa < 2:230409/140‑1 (MQ=255)
aaCGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGaa < 6:130888/139‑1 (MQ=255)
cgcgcgCAGCCCTTCATTGCGCGGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCTGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGGCGACGTCTGTTCTTCGTCGGAACGAat < 8:166113/140‑1 (MQ=255)
cgcgcgCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAACGa < 3:12555/138‑1 (MQ=255)
cgcgcgCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGGGGAGACGCGTGCAGGCGGTGCCGGAGTATCCGGTGTGGTCGACGTCTGTTCTTCGTCGGAACGa > 4:430974/1‑138 (MQ=255)
gcgcAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCATGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAACGAATATc < 6:362679/140‑1 (MQ=255)
gcgcAGCCCTTCATTGAGCTGCGCGCGGAGTTGATCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGGGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGGTGTGGTCGACGTCTGTTCTTCGTCGGAACGAata < 3:518689/138‑1 (MQ=255)
gcAGCCCTTCATTGAGCTGCGCGCGGAGGTGTTCCGGGTACAACCGAATCCTCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTGCTTCGTCGGAACGAATATc < 4:521286/138‑1 (MQ=255)
cAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAACGAATATcc < 4:115168/138‑1 (MQ=255)
cAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAACGAATATCCgc < 5:710468/140‑1 (MQ=255)
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TCCAGTCGGTGTTGGGATCAATGGAAAAAGTGTGGTGTTCTTCGAACCCTTGAGCCGCAGCGACCTGACGAACAGCGTCCTGGCTTTCCTGCAATAACAGAGGATCGTTACCAAGTAAAAGATACGCCGCGCGCAGCCCTTCATTGAGCTGCGCGCGGAGTTGTTCCGGGTACAACCGAATCATCAGTTACCCAGCGTGGTGGAGACGCGTGCAGGCGTTGCCGGAGTATCCGTTGTGGTCGACGTCTGTTCTTCGTCGGAACGAATATCCGCAGCAC > NZ_CP022686/4196137‑4196414
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
