Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F35 I0 R1
|
157 |
6985.9 |
8006972 |
98.3% |
7870853 |
134.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,547,003 |
G→C |
15.8% |
intergenic (+25/‑9) |
CIW80_RS07705 → / → CIW80_RS07710 |
tRNA‑Met/tRNA‑Met |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,547,003 | 0 | G | C | 15.8%
| 143.2
/ 4.7
| 88 | intergenic (+25/‑9) | CIW80_RS07705/CIW80_RS07710 | tRNA‑Met/tRNA‑Met |
| Reads supporting (aligned to +/- strand): ref base G (12/56); new base C (6/9); total (19/69) |
| Fisher's exact test for biased strand distribution p-value = 8.19e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGAAAACGCGAGCAGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAG > NZ_CP022686/1546866‑1547133
|
tGAAAACGCGAGCAGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAg < 5:674939/138‑1 (MQ=255)
aCGCGAGCAGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACgg < 6:49101/138‑1 (MQ=255)
ctaGCATAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTTGTCGCTCGTCGGGCTCATAACCCGAATGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAATTAAAGCAGTACGGTGa < 1:656954/136‑1 (MQ=17)
cgtgCAGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCTAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGa < 3:383222/135‑1 (MQ=255)
cgAGCAGCGTATAGTGCGCATCCCCGGACGCGGGGTGGAGCAGCCTGTTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTGCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGGGa < 4:439962/138‑1 (MQ=17)
cgAGCAGAGTTTTGTGCGCAACCAAGGACGCGGGGTGGAGCTGCCTGGTAGCTCGTCGGGCTCATAAGCCGATGGTCGGCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGa < 4:435261/138‑1 (MQ=17)
cgAGCAGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGAcg < 7:395993/140‑1 (MQ=255)
cgAGCAGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGGCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGa < 1:931014/138‑1 (MQ=255)
cgAGCAGAGTATAGTGCGCAGCCACGGACGCGGGGTGGAGCAGCCTGGTAGCGCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGa < 5:357559/138‑1 (MQ=255)
accattgTATAGGGAGAATCAACCGAGGCGGGGTGGAGCAGACTGGTAGCTCGTCGGTCTCTTAAACCGTATGTCGTCGTTTCAAATACGGAAACCGCAAACAATTAAAATTTGATGAAGTAAATCAGTTCTTTGAcg < 6:219103/132‑1 (MQ=255)
gCAGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCgg < 7:564198/140‑1 (MQ=255)
agagTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCgg < 5:190209/138‑1 (MQ=255)
agagTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCAAAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCgggg < 8:34352/140‑1 (MQ=255)
agagTATAGCGCGCATCCACGGACGAGGGGTGGAGCAGCCTGGGAGCTCGTCGGGCTCATAACCCGAATGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCgg < 6:907145/138‑1 (MQ=255)
agTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTg < 7:800900/140‑1 (MQ=255)
gtttaGTGCGCATCCTCGGACGCGGGGGGGAGCAGGCTGTTAGGTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCACGCAAACAATTAAAATTTGATGAAGTTAACCAGTACGGTGACGCGGGGTgg < 7:581394/137‑1 (MQ=14)
gTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGt < 6:502238/138‑1 (MQ=255)
gTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGt < 3:219495/138‑1 (MQ=255)
ttaGTGCGCATCCACGGACGCGGGGTGGAGCAGCGTGGTAGCTCGTCGGTCTCATAACCCGAAGGTCGTCGGTGCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTgg < 3:354553/137‑1 (MQ=255)
ataGTGCGCCTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGGCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAATTTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTgg < 5:135038/138‑1 (MQ=255)
ataGTGCGCATCCACTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCTTAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTgg < 4:207673/138‑1 (MQ=255)
ataGTGCGCATCCACGGACGTGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTgg < 6:682347/138‑1 (MQ=255)
ataGTGCGCATCCACGGACGCGGTGTGGAGCAGCCTGGTAGCTCGGCGGGCTCATAACCCGAAGGTCGGCGGTTCAAATCCGGCCCCCGCAACCAATTAAACTTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGag < 7:547530/140‑1 (MQ=255)
ataGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTgg < 1:2403/138‑1 (MQ=255)
ataGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTgg < 4:171980/138‑1 (MQ=255)
ataGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGag < 7:538121/140‑1 (MQ=255)
ataGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGCCCCCCGCAACCAATTAAAATTTCATGAAGAAAAGCACTACGGTGACGCGGGGTGGag < 8:839229/140‑1 (MQ=255)
ataGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGGCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTgg < 3:711939/138‑1 (MQ=255)
ataGTGCGCATCCACGGACGCGGGGTGGAGCAGCCGGGTAGCTCGGCGGGCTCATAACCCGAAGGTCGTCGGTTCACATCCGGCCCCCGCCACCAATTATAATTTGCCGCAGTAAAGCAGGACGGTGACGCGGGGTGGag < 7:538123/140‑1 (MQ=17)
ataGTGCGCATCCACGGACGCGGGGGGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTgg < 3:69616/138‑1 (MQ=255)
aGTGCGCATCCCCGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGGTCCAATCCGGCACCCGCAACCAATTAAAATTTGCTGAAGTAACGCAGTACGGTGACGCGGGGTGGag < 4:396833/138‑1 (MQ=14)
gTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGagc < 1:844292/138‑1 (MQ=255)
gTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGGCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGagc < 6:930594/138‑1 (MQ=255)
cgcATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTATATGAAGTAAAGCAGTACGCTGACTCGGGGTGGcgcagg > 1:479260/1‑137 (MQ=14)
cgcATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGACCCCGCAACCAATAAAAATTTGATCGAGTAATGCAGTACGGTGTCGGGGGGTGGtgcagc > 3:799992/1‑138 (MQ=14)
cgcATCCACGGACGCGGGGTGGAGCAGCCTGCTAGCTCGTCGGGCTCATACCCCGAAGGTCGTCTGTTCAAATACGGCCCACGAAACCAATTAAAATTTGATGAATTAAAGCAGTACGGTGACGCTGGGTGGagcctg > 1:5680/1‑135 (MQ=21)
gcATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAATTTTGTTCAAAAAAACCACTAAGGTGACGAGGGGTGGcgcatattt > 7:651169/1‑135 (MQ=14)
gcATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTTTTGACTTAACGCAGAAAGGTGCCGCTGGGTTGagcatct > 1:444572/1‑135 (MQ=14)
cATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAAATAAATGAAAAAAACCACAAAGGTGAGCTGGGGTGGaggataat > 6:310114/1‑132 (MQ=14)
cATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTAATAACCCGAAGGTCGTCTGTTCAAATCCGGCCCCCGCAACCAATTTAATTTTGATTATGTAATACACTACTGTGAAGCGTGGTGGagcttgtt > 5:877417/1‑133 (MQ=14)
aTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTTGTCGGTTCAAATCCGGCCCCCGCACCCAAATAAAATTTGATGAACTAAAGCAGTACGGTGACGAGGGGTGGAgcagcaat > 3:870292/1‑136 (MQ=14)
aTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAATAATTGTTCATGAAAAGCAGTACGGTGAAGCGGGCTGGAGCAGGATGGt > 7:40019/1‑140 (MQ=14)
aTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAATTAAAGAAGTACGGTTACGCGGGGTGGAGCAGCATg > 6:296560/1‑138 (MQ=255)
aTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAAAAAAGCACTACGGTGAATCTGGCTGGAGCTGCATg > 3:139374/1‑138 (MQ=14)
aTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATCACAGAAACCGCTACGGTGCAGCGGGGTGGCGGAGCATg > 6:468460/1‑138 (MQ=14)
tCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAATTTTTTAGGAAGTAAACCGCTACGGTGAAGGGGGGTGGAGGTGCATgg > 2:43508/1‑138 (MQ=14)
ccACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTAAAATTGTTGATGAAAACCAGTACGGTGCCGGTGGCTGGCGCAGAATGGt > 5:479506/1‑138 (MQ=14)
ccACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAATTTTTTTTGAATTAAACCATTACGGTGAGTCGGGGTTGAGCAGAGTGGt > 2:360297/1‑138 (MQ=14)
ccACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAATTTTTGATGATACAAAGCGGTACGCTGCGGATGGGTGGAGCAGAATGGt > 1:544570/1‑138 (MQ=14)
ccACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTAATCTGGTAAACCAGTACGGTGACGCTGGGTGGAGCTGCAttgg > 1:1004779/1‑135 (MQ=14)
gACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGGTCAAATCCGGCCCCCGCCACCAATTATAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCtc > 3:666682/1‑138 (MQ=255)
ctcgGGGTGGAGCAGCCTGGTAGCTCGTCGGTCTCATAACCCGAAGGTCGTCGGGTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACTGTGACGCGGGGTGGAGCAGCATGGTAGCtcgt < 2:973066/136‑1 (MQ=255)
cgcgGGGTGGAGAAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCtcgt < 4:508085/138‑1 (MQ=255)
tggTGGAGCAGCCTGGTAGCTCTTCGGTCTCATAACCCGAAGTGGGTCGGTTCAAATACGGCCCCAGCAACCAATTAAACTTTGATGAAGTCTTGGAGTAAGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCggg < 4:692476/137‑1 (MQ=14)
gTGGAGCAGCCTTGTATCTAGTCGGTCTCATAACCCGATGGGCTGCGGGTTAAAACCGTCCCCCGCAACCAATTAAAATTTGTTGAAGTAAAGCAGTACGGTGCCGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCt < 1:928478/138‑1 (MQ=255)
gTGGAGCAGCCTGGTAGCTCGGCTGGCGCATAACCCGAAGGTCGTCGGTGCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCt < 3:899598/138‑1 (MQ=255)
gggAGCAGCCTGGTCGCGCGTCGGTCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTTATGAAGTAAAGCAGTCCGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTc < 1:949952/137‑1 (MQ=14)
agacTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGGCGTTTCAAATCCGGCCCCCGCAACCAATTATAATTTGATGAAGTATAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAAcc < 5:296560/135‑1 (MQ=11)
tgCTCGTCGGTCTCATAACCCGAAGGTCTGCGGGTCAAATCCCGCCCCCGCAACCAATTATAATTTGAAGAAGTAAAGCAGTCCGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGgtc < 3:974557/137‑1 (MQ=11)
tgCTCGGCGGGCTCATAACCCGAAGGGCGGCGGTGCAAATCCGGCCCCAGCAACCAATTAAAATTTGCTGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGgtcgt < 7:51684/139‑1 (MQ=11)
gtcgGGCTCATAACCCGAAGGGCGTCGGTTCAAATCCTGCCCCCGCAACCAATTAAAATTTGATGAAGTCAAGCAGTACGGGGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCgg < 1:909447/138‑1 (MQ=255)
ggcgGTCTCAAAACCCGAAGGTCGTCGGTTGATAAACCGCCCCCGCAACCAATTATATTTTGCTGAAGTCCTGCACTACGGGGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCGCATACCCCGAAGGTCGTCGGtt < 8:143628/138‑1 (MQ=11)
caaatcccGAAGGTCGTCGGTGCACATCAGTCCCCCGCAACCAATTATATTTTGTTGAAGTAACGCACTCCTGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATc < 4:557498/133‑1 (MQ=11)
aGGTCGGCGGCTCAAATCCGGCCCCCGCAACCAATTAACATTTGCTGAAGTAAAGCAGTCCCGGGACGCGGGGGGGAGCAGCATGGTAGCGCGTCGGGCTCATAACCCGAAGGTCGTCGGGTCAAATCCGGCCCCCGc < 1:488257/138‑1 (MQ=11)
tcgCTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGGTCAAATCCGGCCCCCGCAACCaa < 2:1503/138‑1 (MQ=255)
atactgCCCCCGCAACCAATTACAATTACTTGAAGATAAGCATTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTtga < 8:319779/135‑1 (MQ=14)
ataaggCCCCCGCAAACAATTAAACTTTTCTGTAGTAAAGGCGTCCTGGGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTtga < 8:377217/136‑1 (MQ=14)
aacaggCCCCCGCAAACAATTAAAATTTTATGAAGAAAAGCACTACTGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAAttt < 4:147892/134‑1 (MQ=14)
aTCCGGCCCCCGCAACGAAATACAAATTGATGAAGTAATGCACTACTGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAAttt < 5:674791/138‑1 (MQ=14)
aTCCGGCCCCCGCAACCAATTGACATTTGATGAAGACATGCCGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGGCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAAttt < 6:183600/138‑1 (MQ=14)
aTCCGGCCCCCGCAACCAATTAAAATTTGCTGAAGTCACCGAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAAttt < 6:433827/138‑1 (MQ=14)
aTCCGGCCCCCGCAACCAATTAAAATTTGATTAAGTAACGCACTACTGTGACGCGGGGGGGAGCAGCATGGTAGCTCGGCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAAttt < 4:142830/138‑1 (MQ=14)
gccgccTCAATCAATTATATTTTGATGTAGAATGGCACTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTtgatga < 5:854910/138‑1 (MQ=14)
gccgccTCAAACATTTATAATTTCATGAAGTATAGCAGTACGGTGACGCGGGTTGGAGCAGCATGGTAGCTCTTCGGGCGCATAACCCGTAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTtgatga < 3:444701/138‑1 (MQ=17)
ccccccGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGCTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTtgatga < 3:677477/137‑1 (MQ=255)
ccccTCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGaaa < 3:645129/138‑1 (MQ=255)
ccccGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTc > 1:175931/1‑79 (MQ=255)
ccccGCAACCAATTAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTc < 2:175931/79‑1 (MQ=21)
cccTCATCCAATAAAATGTTGAAGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAAt < 4:442257/138‑1 (MQ=17)
ctcAACCAATTATAATTTGATGAATTCAAGCAGTACTGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATaa < 1:962957/136‑1 (MQ=17)
ctcAACCAAATAAAATTTGATGAAGTGATGGATTACTGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATaa < 5:919270/136‑1 (MQ=17)
ctcAAACAATTTAAATTTGATGAAGTAAATCATTACTGTGACGCTGGGGGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATaa < 1:84536/136‑1 (MQ=17)
cGCAACCACATAAAATTATCAGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGTGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATaa < 6:580920/138‑1 (MQ=17)
cGCAACCAATTAAACTTTGTTGAAGTTACGGACTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTGCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATaa < 3:523473/138‑1 (MQ=17)
cGCAAACAATTAAATATTGATGAAGTCACGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATaa < 2:541404/138‑1 (MQ=17)
caCCAATAATAATTTTTTGAATTCACGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAg < 8:628703/139‑1 (MQ=14)
aaTGTGTTGAAGTAAACCATTACGGTGACGCGTGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAAATTTGATGAAATAAAGCAGTACGGTGAcg < 7:727812/140‑1 (MQ=14)
gcaGTAACCCACTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGGCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCACAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGt < 1:569013/136‑1 (MQ=14)
aGTATAGCAGTACGGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGag < 7:365418/140‑1 (MQ=255)
|
TGAAAACGCGAGCAGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAG > NZ_CP022686/1546866‑1547133
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
