Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F2 I0 R1
|
233 |
6461.8 |
9239822 |
98.3% |
9082745 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,547,003 |
G→C |
10.0% |
intergenic (+25/‑9) |
CIW80_RS07705 → / → CIW80_RS07710 |
tRNA‑Met/tRNA‑Met |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,547,003 | 0 | G | C | 10.0%
| 194.1
/ 3.5
| 124 | intergenic (+25/‑9) | CIW80_RS07705/CIW80_RS07710 | tRNA‑Met/tRNA‑Met |
| Reads supporting (aligned to +/- strand): ref base G (21/79); new base C (8/6); total (31/93) |
| Fisher's exact test for biased strand distribution p-value = 7.20e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 125 total aligned reads displayed.
CATGAAAACGCGAGCAGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAG > NZ_CP022686/1546864‑1547133
|
cATGAAAACGCGAGCAGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAg < 1:135963/140‑1 (MQ=255)
cgAGCAGCTTATAGTGCGCATCCTCGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGAcg < 2:401270/140‑1 (MQ=255)
cgAGCAGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAACTCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGAcg < 7:910681/140‑1 (MQ=255)
cgAGCAGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGAcg < 7:36658/140‑1 (MQ=255)
cgAGCAGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGAcg < 4:879322/140‑1 (MQ=255)
cgAGCAGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCGCGTCGGGCTCATAACCCGAAGGTCGTCGTTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGAcg < 1:937576/140‑1 (MQ=255)
cgAGCAGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCGCGTCGGGCTCATAACCCGAAGGGCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGAcg < 1:250333/140‑1 (MQ=255)
cgAGCAGAGTAGAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCGGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGCTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGAcg < 7:866617/140‑1 (MQ=255)
cccatagTATTGTGCGCATCCACGTACCCGGGGTGGTGCAGTGTGTTAGCTAGTCGGTCTTATATCCTGAATGTCTTCTGTTCAAATCCGTCACCCTCAATCAATTAAAATTTGATGAAGTAAAGCAGTACGTTGActc‑g < 4:1066342/135‑1 (MQ=255)
accAGAGTATAGTGCTCATCCACGGCCGCGGGTTGGAGCAGCCTGGTAGCTCGTCGGTCTATTAACCCGAAGGGCGTCGGGTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATTAAGTAAAGCCGTACGGTGAcgct < 4:11441/138‑2 (MQ=17)
aGCAGAGTATCGTGCGCAGCCCCGGACGCGGGGTGGAGCAGCCTGGTAGCTCGGCGGTCTCATAAACCGAAGGTCGTCGGTTCAACTCCGGCACCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGAcgc‑g < 8:819369/140‑1 (MQ=17)
aGCAGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGAcgc‑g < 3:652145/140‑1 (MQ=255)
aGCAGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGAcgc‑g < 3:286454/140‑1 (MQ=255)
cgagTATAGTGCGCATCCACGGACGCGGGGTGGCTCAGCCTGGTAGCCCGTCTGTCTCATAACCCGAAGTTAGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑gggg < 4:627066/139‑1 (MQ=17)
agagTATAGTGCTCATCCACGGACGCGTGGTGGAGCAGCCTGGTAGCTCGTCTGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑gg < 6:808413/138‑1 (MQ=255)
agagTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑gggg < 4:1173893/140‑1 (MQ=255)
agagTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGAAGAAGTAAAGCAGTACGGTGACGC‑gg < 5:45331/138‑1 (MQ=255)
agagTATAGTGCGCATCCACGGACGCGGGGCGGAGAAGACAGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCTGTGCAACACCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTCCGGTGACGC‑gggg < 4:15584/140‑1 (MQ=17)
agagTATAGGGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑gg < 6:958922/138‑1 (MQ=255)
agTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGTg < 1:1115883/140‑1 (MQ=255)
agTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGGAGCTCGGCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGTg < 8:613002/140‑1 (MQ=255)
tataGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAATAGAGTTGTATGAAAGCCGTACGGTGCCGG‑GGGGTGGa > 7:954153/1‑140 (MQ=17)
ataGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTATCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCAGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGTGGag < 3:1145612/140‑1 (MQ=255)
ataGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGTgg < 5:523417/138‑1 (MQ=255)
ataGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGTGGag < 1:1188442/140‑1 (MQ=255)
ataGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGGCGGTCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGTGGag < 7:275241/140‑1 (MQ=255)
ataGTGCGCATCCACGGACGCGGGGGGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGGCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGTGGag < 2:71532/140‑1 (MQ=255)
ataGTGCGAATCCACGGACGCGTGGTGGAGAAGAGTGGTAGCTCGTCGGGCTCATCACCCGAAGGTCGTCGGTTCAAATCCGGCCCCAGAAACCAATTAAAATTTGATGAAGTAAAGCAGTCCGGTGACGC‑GGTGTGGag < 4:742632/140‑1 (MQ=14)
aGTGCGCATCCACGGACGCTGGGTGGAGCAGGCTGGTAGCGCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGTGGagca < 2:537744/140‑1 (MQ=255)
gTGCTCTTCCTCGGACGCGGGGTGGAGCAGACTTTTCGCTCGTCGGTCTCTTATCCCGAATGTGGTCGGTTCACATCCGGCCCCGGGTTCCATTTAATATTTGATGAAGTAAAGCAGTTCGGTGACGC‑GGGGTGGagcag < 4:374942/140‑1 (MQ=9)
gTGCGCATCCACGGACGCGGTGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGTGGagcag < 8:1007758/140‑1 (MQ=255)
gTGCGCAGCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGTGGagcag < 1:606212/140‑1 (MQ=255)
tGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTAAATTTGAGCATAGAAACCCGTACGGTGAGTC‑GGGGTGgcgctgg > 7:123346/1‑137 (MQ=14)
gcgcATCCACGGACGCGGGGTGGAGCATCCTTGTAGCTCGTCGGCCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAAATTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGTGGAgcagca < 2:267797/140‑1 (MQ=255)
cgcATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTGAAATCCGGCCCCCGCAACCAATTAAAATTTGATGATGTAAAGCAGTACGGTGACGC‑TGGGTGGAGAAGAAt > 4:771733/1‑140 (MQ=14)
cgcATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATATTTGAGGAAGAAAAGCACTACGGTGCCGA‑GGGGTggcggaga > 5:722230/1‑132 (MQ=14)
cgcATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAAATTTGATGAAATAAAGCATTACTCTGAAGC‑GGGTAGGAgcagcaa > 7:746534/1‑139 (MQ=14)
gcATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCTTAACCCGATGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCATTACGGTGACGC‑GGGGTGGAGCAGCATg > 1:267797/1‑140 (MQ=255)
gcATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAATATTTGATGAAAAAAACCTCTACGGTGACGA‑TGGGTGgcgctgattt > 3:39284/1‑134 (MQ=14)
gcATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAATATTTCTTGATATAAAGCAGTACGGTG‑CGCGGGGGTGGagctggttg > 3:529565/1‑134 (MQ=14)
cATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGAcg < 8:90453/122‑1 (MQ=255)
cATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAAATAGATGAGATAAACCAGAACGGTGACGA‑TGGGTTGCGCATGATgg > 3:628769/1‑140 (MQ=14)
aTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCCACCAATTTAATATAAATGATACAAACCAGAACGGTGAAGA‑GGGGTTGagcagttttgt > 7:386985/1‑134 (MQ=11)
aTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTTTTGAGGAGGGAAAGCACTACGGTGACGC‑TGGCTTGAGCTGGATggg > 7:395117/1‑139 (MQ=14)
aTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTAATTTTGAGGAAAGAAACCAGAACGGTGAGAC‑TGGGTGgcgctgtatt > 5:685741/1‑132 (MQ=11)
aTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGAGGAAGGAAAGCTGTACGGTGCAGG‑TGGGTTGAGATGCATGGt > 1:617548/1‑140 (MQ=14)
aTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTATTTGTGGTAAACCTCTACGGTGCAGC‑GGGCTGGCGCTTCATggg > 4:1026025/1‑139 (MQ=14)
aTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTAAAATCCGGCCCCCGCAACCAATTTAAATTTGATGAAGTAAAGCACTAAGGTGAGGA‑GGGGTTGCGCAGGATGGt > 3:39332/1‑140 (MQ=14)
aTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTAGGGCTCATAAACCGAAGGTCGTCGGGTCAAATCCGGCCCCCGCAACCAATTAAAAGTTGATGAAATAAAGCAGTACGGTGACGC‑GGGGGGGAGCAGCGTggg > 7:876979/1‑139 (MQ=11)
aTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCGCGGCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGTGGAGCAGCATGGt < 2:198184/140‑1 (MQ=255)
ccACGGACGCGGGGTGGAGCAGCCTGGTAGCTCTTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATGTTATGAAGTAAAGCAGTACGGTGACGC‑GGGGTGGAGCAGCATGGt < 5:637769/138‑1 (MQ=255)
ccACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAATATTAATCAATAAAACCACTAAGCTGAAGA‑GGGGTGGAGCAGGATggg > 5:560964/1‑137 (MQ=14)
cgcgTGGTGGAGCAGCCTGGTAGCGCGTCGGGCTCATAACCCGAAGGGCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTTATGAAGTAAAGCAGTACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCtcgtcg < 2:49526/140‑1 (MQ=255)
cgcgGGGGGGAGCAGCCTGGTAGCTCGGCGGGCTCATAACCCGAAGGGCGTCGGTGCAAATCCGGCCCCCGCAACCAATTAAAATTTCATGAAGTAAAGCAGTACGGGGACGC‑GGGGTGGAGCAGCATGGTAGCtcgt < 6:483776/138‑1 (MQ=14)
ctgggTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGGCGGAGGTGCAAATCCGGCCCCCGCAACCAATTAAAATTTTCTGAAGTAACGCAGTACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCggg < 2:141037/138‑1 (MQ=14)
cgGGGGGGAGCAGCCTGGTAGCTTGACGCTCTCATAACCCGAAGGGTGTCTGCTCAAATAAGGCACCCGCAAAAAATTAAAATTTGTTGAATTAAAGCATTTATGTGACGC‑GGGGTTGAGCAGCATGGTAGCtcgtcg < 6:543128/138‑1 (MQ=255)
ggggTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAATATTCATGAAGAAAAGCACTACGGTGCCAC‑TGGGTTGAGCAGACTGGTAGATCGAGGGGc > 1:1103407/1‑140 (MQ=11)
gtgtAGGAGCCTGGTATCTCGTCGGGCTCAAAACCCGAAGGGCTTCGGTTCAAAAACGGCCCCCGCAACCAATTAAAAATTTATGAAGTAAAGCACTACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCa < 4:831307/140‑1 (MQ=14)
ggggAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGGTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAACGCAGTACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCt < 6:140123/136‑1 (MQ=255)
gTGGAGCAGCCTGGTAGCTGGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAACGCAGTACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCa < 1:1007902/140‑1 (MQ=255)
tGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAAATTGATGAAGTAAAGCAGAACGGTGCAGC‑TGGGTGGCGCATATTGGTTGCTAGTCGGGCTAAt > 3:958762/1‑140 (MQ=11)
gggAGCAGCCTGGTTGCGCGGCGGGCTCAAAACCCGAAGGTCGTCGGGGCAAATCCGCCCCCCGCAACCAAATACAATTTGATGAAGACAAGCAGTACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCAt < 4:1058143/139‑1 (MQ=14)
gggAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGGCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGAAAAGCAGTACGGCGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCAt < 7:851358/139‑1 (MQ=255)
gcagcCTGGTCGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAAcc < 3:135922/140‑1 (MQ=255)
gcCTTGTAGCTCGGCGGTCTCATAACCCGAAGGTCGGCGGTTCAAATCCTGCCCCCGCAACCAATTAAAATTAGATGAAGTAAAGCCGTACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAAccc < 6:749507/138‑1 (MQ=14)
gttgTAGCTCGGCGGGGTCATAACCCGAAGGTCGTCGGGGCTAATCCGGCCCCCGCCACCAATTAAACTTTGATGAAGTAACGCAGTCCGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAg < 1:44056/137‑1 (MQ=11)
aGCTCTGCGGGCTCATAACCCGAAGGTGGTCGGTTCAAATCCGGCACCCGCAACCAATTAAAATTTGATGAATTAAAGCAGTACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGgtcgt < 2:1044683/140‑1 (MQ=11)
aGCTCGTCGGGCTCATAACCCTAAGGTCGTCGTGTCAAATCCTGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGgtcgt < 2:152580/140‑1 (MQ=255)
cTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAAATTTGATGAAGTAAAGCAGTACGGAGAACC‑CGGGTTGAGCAGAAAGGAAGCTCCGCGTGCTATTAAACACAAGgtcgtgg > 8:1046106/1‑138 (MQ=11)
tcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGt > 6:567830/1‑91 (MQ=37)
tcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGt < 5:567830/91‑1 (MQ=37)
aaTAACCCGAAGGCCGTATCTTGAAAACCCGCACCCGCAACCAAATAAATTTTGATGAAGTAAAGCATAACCGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATc < 6:604723/137‑1 (MQ=11)
aaTAACCCGAAGCGCGTCGGGTCAAAACCGCCCCCCGCAAACAAATAAAAATTGATGAAGTAACGCATTACGCTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCg < 8:1083326/139‑1 (MQ=11)
tAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGTGGag > 1:903798/1‑86 (MQ=38)
cccGAAGGGCTTCGGTTCAAATCCGGCCCCCGCAACCAATAAAACTTTGAAGAAGTAATGCAGTACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGcccc < 3:75202/140‑1 (MQ=11)
aaGGTCTGCTGTTCAAAACCCGCCCGCGCAACCAATTATAATTTTCTGAAGAAATGCCTTACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCg < 5:220820/138‑1 (MQ=11)
ggTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAAATAGATGAATAAAACAACAACGGTGCCGA‑GGGGTGGCGCAGCATGGTAGCTCGTCGGTCACAAAACCCGACGGTCGACGGTTCAAATCCGGCACCCCCa > 5:716908/1‑138 (MQ=2)
ctCCGGCCCACTCAAGCAAAAAAAAATTCATGTATAAAACCAGTACCGGGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTtga < 8:741803/139‑1 (MQ=14)
atacGGCCCCAGCAACCAATTAAAAATTTATGAATTAAAGCAGTACGGGGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAAttt < 5:30586/135‑1 (MQ=14)
ataaggCACCCGCTACCAATTAAAATTAGTTGAAGAAAAGCCGTACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTtga < 1:862491/136‑1 (MQ=14)
aaccGTCCCCCGCAACCAATTAAAAATTCCTGAAGACAACCCCTACCGGGACGC‑GGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTtga < 4:653917/138‑1 (MQ=14)
aTCCGGCCCCCGCAACCAATTAAACTTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGGCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTtga < 8:57371/140‑1 (MQ=255)
aTCCGGCCCCAGCAACCAAATAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTtga < 4:970752/140‑1 (MQ=255)
aTCCCGCCCCCGCCACCAATTAAAATACCATTAAGTCCAGCCCCACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCGCGGCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCAGCAACCAATCAAAATTtga < 2:1188250/140‑1 (MQ=14)
aTCCCGCCCCCGCAACCAATTAAATTTTGATGAAGTAAAGTAGTACGGTGACGC‑GGGGTGGAGCAGCATGGGAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAAttt < 5:342082/138‑1 (MQ=255)
aTCAGGCCCCCGCAAACAAATAAAATTTTATGAAGTAATGCAGTACGCTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAAttt < 5:969067/138‑1 (MQ=14)
tcactagCAATCAAATAAATTTTTATGAAGTATAGCATTCCGCGGACGC‑GGGGTGGAGCAGCATGGTAGCTCGGCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGaaa < 8:1006231/134‑1 (MQ=14)
gcacccTCAATCAATTAAAATTTGATGAACTAAAGCAGTACGGTGTCGC‑GGGGGGGAGGAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTtgatga < 5:416459/135‑1 (MQ=14)
gaccccGCAACCAATTAAAATTTGATGAAGTAAACCAGTACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGaaa < 2:544060/138‑1 (MQ=255)
ccccTCAACCAATTAAAATTTTATGAATTAACGCACTACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATa < 1:560360/140‑1 (MQ=17)
ccccGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGTgg > 5:759672/1‑54 (MQ=255)
cGCAACGAATTATCATTTGGTGAAGTAATGCATGACTGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTGCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAg < 3:21013/140‑1 (MQ=17)
cGCAACCAATTAAACTTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAg < 3:771365/140‑1 (MQ=255)
cGCAAACAATTAAACTTTCATGAAGTAAAGCAGTACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAg < 1:628342/140‑1 (MQ=255)
caacaaAATATAATTTGTTGTATTATTGCATTCCGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTTGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAATTAAAGCa < 2:669654/140‑1 (MQ=14)
tAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATGAAAAATAGATAAAAAAAAGAAGTAAgg > 5:756568/1‑138 (MQ=14)
aaTTTGACGAATTTAAGCAGTACTCTGAAGC‑GTGGTGGAGCAGCCTGGTAGATCGTCGTGATCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCTAAATTTGATGAAATTAAGCAGTACGGTGAcg < 3:515751/140‑1 (MQ=14)
tatgaAGACATGCATTAGGTTGAAGC‑TGTGTGGAGCAGCATGGTCGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCCACCAAACAAAATTTTCTGAAATAACGCAGTACGGTGACGCgggg < 8:433902/139‑1 (MQ=11)
agacaggCAGTCCCGTGACGC‑GGGGCGGAGCAGCATGGTAGCTCGTCTGGCTCATAACCCGAAGGTCTTCTGCTCAAATCCGGCCCCCGCAACCCATCAAAATTTGATCAAATAACGCAGTACGGTGACGCGGGGTGGag < 2:364162/134‑1 (MQ=14)
agaatcgCAGTTCGCTGACGC‑GTTGTGCAGCAGCATGGTTTCTCGTCGGGATCATATGCCGAAGGTCGTCGGTTGAAATCCGGCCCCCGCAACCAATCAAAAATTGAAGAAATATAGCAGTACGGTGACGCGGGGTGGag < 4:137231/134‑1 (MQ=14)
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CATGAAAACGCGAGCAGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGC‑GGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAG > NZ_CP022686/1546864‑1547133
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
