Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F13 I0 R1 235 6960.4 9135780 98.4% 8989607 135.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NZ_CP022686 1,547,110 G→C 24.1% intergenic (+22/‑12) CIW80_RS07710 → / → CIW80_RS07715 tRNA‑Met/tRNA‑Met

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0226861,547,1100GC24.1% 83.4 / 7.8 59intergenic (+22/‑12)CIW80_RS07710/CIW80_RS07715tRNA‑Met/tRNA‑Met
Reads supporting (aligned to +/- strand):  ref base G (31/13);  new base C (13/2);  total (44/15)
Fisher's exact test for biased strand distribution p-value = 3.10e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAGCTGCTATTGGCTTGCGG  >  NZ_CP022686/1546971‑1547244
                                                                                                                                            |                                                                                                                                      
ctgaaCCAATTAAAATTTGATGAAGTAAAGCAGTACGCTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAg                                                                                                                                        <  2:1098597/137‑1 (MQ=255)
cGCAATCAAATATAAATTGATGAATTCAACCACTACGGGGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAg                                                                                                                                        <  8:805052/140‑1 (MQ=14)
cGCAACCAATTAAAATTTGATGTAGTAAAGGATTCCGGGGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAg                                                                                                                                        <  1:549934/140‑1 (MQ=17)
cGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGTCCCCGCAACCAATCAAAATTTGATGAAATAAAg                                                                                                                                        <  7:422023/140‑1 (MQ=255)
     ccAATTATAATTTGCTGAATTAATGCAGTACGGGGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAg                                                                                                                                     <  4:540908/138‑1 (MQ=17)
          tAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTTATGAAAAAAAGCTGAACgg                                                                                                                                >  4:151861/1‑138 (MQ=255)
                 tgatgaAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGAGGCggg                                                                                                                       >  5:1098101/1‑140 (MQ=255)
                 tgatgaAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAATATTTGATCATAAAAAGCACTACGGTGACGAggg                                                                                                                       >  8:419156/1‑140 (MQ=17)
                  cttgaAGTATAGCATTCCGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGGGACGCgg                                                                                                                        <  3:329512/136‑1 (MQ=14)
                       attctaGCATTAAGCTGACGCGGGGTGGCGCAGCTTGGTAGATCGTCGGGCTCATATCCCTAAGGGCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAATTACAGCAGTACGGTGACGCGGGGTgg                                                                                                                   <  4:518592/133‑1 (MQ=11)
                       agaatcgCAGTACGGTCACTCGGGGTGGAGCAGCCTTGTAGCTCGTCGGGCTCATAACCCGAAGGTCGGCGGGTCAAATCCGGCCCCCGCCACCAATCAAAAATTGATGAAATAAAGCATTACGGTGACGCGGGGTGGag                                                                                                                 <  7:764937/134‑1 (MQ=14)
                         aaacccAGTACGGTGACGCCGGGTGGAGCAGCTTGGTAGATCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTCGAAGAAATAAAGCACTACGGTGACGCGGGGTGGagca                                                                                                               <  1:1102389/135‑1 (MQ=14)
                                tttcgctGACGCGGGGGGGAGCAGCCTGGTCGCTCGTCGGGCTCATAACCCGAAGGGCGTCGGTTCAAATCCTGCCCCCGCAACCAATCAAAATTTGATGAAAAAACGCAGTACGGTGACGCGGGGTGGAGCAGCCTg                                                                                                          <  4:235628/132‑1 (MQ=11)
                                 tACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGTAAGAAACCGCTAAGCTGCAGGGGGGTTGAGCTGACTGGtt                                                                                                       >  1:155207/1‑139 (MQ=14)
                                 tACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAAAAAAGCAGTACGGTGACGAGGGGTGGAGCAGCATTGTa                                                                                                       >  2:318994/1‑140 (MQ=255)
                                 tACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGAGGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGtt                                                                                                       >  7:964762/1‑139 (MQ=255)
                                 tACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAAACCGGCCCCCGCAAACAATAAAAAATTCATCAAAAAAAGCACTAAGGTGACGCGGGGTGGagctgcattcgt                                                                                                       >  5:810808/1‑134 (MQ=11)
                                  aCGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATGAGAGGAAATAAAGCAGTACGGTGCCGAGGGCTGGAGCAGCGTGGTAg                                                                                                      >  1:125829/1‑140 (MQ=14)
                                   cGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCTAATTTTGATGATAGAAACCAGTACGCTGCCGCGGGGTGGAGCTGGCTGGTAgg                                                                                                     >  7:225973/1‑139 (MQ=14)
                                   cGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAAATTTGATGAAAGAAAGCAGTAAGGTGCATCGGGGTTGCGCAGCATGGtt                                                                                                       >  4:461893/1‑137 (MQ=11)
                                       gACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAAAAAACCCGAACGGTGCCGCGGGGTGGAGCAGCCTGGTAGCtagg                                                                                                 >  5:351651/1‑137 (MQ=14)
                                        aCGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGCCCCCCGCAACCAATCAATATTTTTGTAAAAAAAGCGGAACGCTGACGCGGGCTGGCGCAGCGTGGTTGCtgtgc                                                                                                >  7:8701/1‑136 (MQ=11)
                                         cgctgtgTGGAGCAGCCTGGTCGCTCGTCGTGCTCAAAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGTAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCtcgtcg                                                                                               <  7:117787/134‑1 (MQ=11)
                                         cgcgGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAAGAAAGCAGTACGGTGACGAGGGGTGGCGCAGCCTGGTATCtcggcg                                                                                               >  7:88017/1‑140 (MQ=14)
                                         cgcgGGGAGGAGCAGCTTGGTATCTCGTCGGGCTCATAAGCCGAAGGTCGGCGGTTCAAATCCGTCCCCCGCAACCAATCAAATTTTCATGAAATAACGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCtcgt                                                                                                 <  4:583741/138‑1 (MQ=11)
                                          gcgGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAAATTTGATGTAAAAAACCAGTAAGGTGCCGCTGGGTGGAGCTGCCTGGTTGCtagtc                                                                                                >  3:614579/1‑138 (MQ=11)
                                           cgGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAAATAGATGAAAGAAACCAGAAAGCTGACTCGGGGTGGCGCAGAATGGTTGCTCGTCggg                                                                                             >  6:889329/1‑140 (MQ=11)
                                             gggTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAATATTTGATGAAATAAACCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTAGTCggg                                                                                             >  3:11896/1‑138 (MQ=11)
                                              ggTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAATATTTGATCATAAAAAGCAGAACGCTGAAGGGGGGTGGAGCAGAATGCTAGTTCGTCGGTCtg                                                                                          >  7:942626/1‑139 (MQ=11)
                                                tGGATCAGTCTGGTAGCTCGTAGGTAACAGAAGCCGAAGGGCGTCGGGTCAAATCCTGACCCCGCAACCAATCATATATTGCAGAAATAATGCATTACTCTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCAt                                                                                        <  2:552849/140‑1 (MQ=2)
                                                tGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGATAAAAAGCACTAAGGTGCAGCGGGGTGGAGGAGCCTGGGATGTAGACGGGCTCAt                                                                                        >  7:797959/1‑140 (MQ=14)
                                                gggAGTAGCCTGTTCGCTCGTCGCTCTCACACCCCGAAGGGCGTCTGTTCATATACGGCCCCCGCCACCAATCCAATAGTCATGAAATCAACCCGTCCTGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCAt                                                                                        <  6:990463/139‑1 (MQ=2)
                                                  gAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAAAAAAGCAGTACGGTGACGCGGGGTGGAGCAGACTGGTAGCTCGTCGTGCTGATaa                                                                                      >  7:628870/1‑140 (MQ=255)
                                                        caTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTTGTTGATATAAAGCAGTACGGTGACGGGGGGTGTAGCAGCCTGGGAGCTCGTCGGGCTCATACCCAGaa                                                                                >  1:786141/1‑140 (MQ=14)
                                                          tGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACgg                                                                                                                                >  4:138565/1‑90 (MQ=38)
                                                          tGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACgg                                                                                                                                <  3:138565/90‑1 (MQ=38)
                                                          tGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAAGAAAGCGGTACGGTGACGCGGGGTTGCGCAGACTGGTAGCTAGTCGGGGTCATAACCCGaa                                                                                >  4:179320/1‑138 (MQ=11)
                                                            gTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAAATTGATGAAATAAACCAGAACGGGGCCGCGGGGTGGAGCAGCATGGTAGATAGACGGGCACAAACCCCGAAgg                                                                              >  4:869491/1‑138 (MQ=11)
                                                             aaGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAAATTTGATGAAAGAAAGCAGTACGGTGACGCGGGGTGGCGCTGCCTGGTAGCTCGTCGGGCTGAGAACCCGAGGgtgg                                                                           >  2:157910/2‑138 (MQ=11)
                                                                  cgtcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCACCCAATAAAAATTTGTTGAAATAAACCAGTACGGTGAAGAGGGGTGGAGCTGCGTGGTGGATAGACGTGCTGATAACCAGGAGGTGGTCGGt                                                                      >  8:49208/1‑140 (MQ=11)
                                                                  cgtcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATGTAAATTTGATGAAAAAAACCAGTAAGGTGACGAGGGGTGGAGCAGCCTGGTAGCTAGTCGGGCGAATAACCCGAAGGTCTTGGGt                                                                      >  2:500168/1‑140 (MQ=11)
                                                                  cgtcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGt                                                                      >  1:569744/1‑140 (MQ=37)
                                                                    tcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATGTAAATTTGTTGATAGAAAGCAGTACGGTGACGCGGGGTGGCGCAGCGTGGTTGCTAGGCGGGCGCATAACCCGAAGGTCGTCGGtgc                                                                    >  2:208624/1‑138 (MQ=11)
                                                                    tcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTTGATGAAATAAAGCAGGACGGTGACGCGGGGTGGAGCTGACTGGTAGCTCGTCGGTCTAATAACCCGAAGGTGGTCGGGTc                                                                    >  7:516065/1‑140 (MQ=11)
                                                                      gggCTCATAACCCGAAGGTCGTCGGTTCATATCCGGCCCCCGCAACCAATCAAAATTAGATGAAAAAAAGCTGTACGGTGACGCGGGGTGGAGCAGACTGGTAGCTCGTCGGGCTCATACCCCGAAGGTCGTCGGttg                                                                    >  3:481932/1‑137 (MQ=11)
                                                                                    aaGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGcc                                                    >  1:180943/1‑139 (MQ=37)
                                                                                      ggTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCACTACGGTGACGCTGGGTGGAGCAGCCTGGTAGATCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATACGGCACCCGcc                                                    >  4:779584/1‑137 (MQ=11)
                                                                                      ggTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAAATTACATGAAATAAACCAGTACGGTGAAAATGGGTGGAGCTGCCTTGTATCTAATCGATCTCATAACGAGAAGGTCATCGCTTCAAATACGTccccaccaaa                                                  >  7:412578/1‑134 (MQ=2)
                                                                                          gtcgGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAg                                                                                                                                        >  5:240009/1‑50 (MQ=255)
                                                                                          gtcgGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAg                                                                                                                                        <  6:240009/50‑1 (MQ=255)
                                                                                           tcgGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCa                                                                                         >  2:293759/1‑96 (MQ=40)
                                                                                           tcgGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCa                                                                                         <  1:293759/96‑1 (MQ=40)
                                                                                           tcgGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATCAAATAAACCAGTACGGTGCCGGGGGGTGGCGCAGCCTGGTAGCTAGACGGTCTCATAACCCTACGGTCGACGCTTAAAAACAGGACCCAGCAAGCAAtt                                             >  2:1053741/1‑140 (MQ=2)
                                                                                             ggTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCaaat                                             >  3:194273/1‑136 (MQ=37)
                                                                                             ggTTCAAATCCGGCCCCCGCAACCAATCAAAATTAGATGATATAAAGCTGAACGGTGACGGGGGGTGGAGCAGCATGGTAGCTAGTCCGGCATATACCCCGAAGGTCGTCGGTTCAAATACGGCCACCGCCACAAAtt                                             >  4:1144085/1‑138 (MQ=11)
                                                                                             ggTTCAAATCCGGCCCCCGCAACCAATCAAAATTAGATGAAAAAAACCAGTACGGTGACCCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTAAAATACGGCGCCCGCAAACAAtt                                             >  3:194277/1‑138 (MQ=11)
                                                                                                   aaTACGGCCCCCGCAAACAATCATATTTTTCTGTAATTATCCAGTCCGGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTGCAAATCCGGCCCCCGCAACCAATTTATTAg                                       <  3:682917/138‑1 (MQ=14)
                                                                                                         gCCCCCGCAACCAATCAAATATTGATGATACAAACCAGTACGGTGAAGAGGGGTGGAGCAGACTGGTTGCTAGTCGTGCGCATCACCCGAAGGTGGTCGGTGCAACTACGGCCCCCGCAACCAATTAATTACAAAGCTGa                               >  8:912266/1‑140 (MQ=12)
                                                                                                         gCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGAcg                                                                                                                           >  1:1072064/1‑48 (MQ=255)
                                                                                                         gCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGAcg                                                                                                                           <  2:1072064/48‑1 (MQ=255)
                                                                                                         gCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACTCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCAGAAGGTCGTCGGTGAAACTCAGGCCCCCGCAACCAATTAATTAGATAGCTGa                               >  2:276347/1‑140 (MQ=14)
                                                                                                         gCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTTGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCACCGCAACCAATTTATTAGAAtgatga                               >  1:1156748/1‑140 (MQ=255)
                                                                                                         gCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCACTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGTGCTCAAAACCCGAATGTCGACGGTTCAACTCCGGCCCCCGCAACCAAATTATTAGAATGCTGa                               >  5:291299/1‑140 (MQ=14)
                                                                                                           ccccGCCACGAATAACATTTTCATGAAGATAACGCTTACGGTGACGCGGGGTGGAGCATCAGGGTAGCTCGTCGGGCTCATAACCCGAATGTCGTCGGTTCAAATACGGCCCCCGCAACCAATTTATTAGACTGCTGACa                             <  8:171584/140‑1 (MQ=14)
                                                                                                                                         aaaGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAGCTGCTATTGGCTTGCgg  >  4:124869/1‑138 (MQ=255)
                                                                                                                                            |                                                                                                                                      
CGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAGCTGCTATTGGCTTGCGG  >  NZ_CP022686/1546971‑1547244

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

N/A