Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F2 I0 R1 252 7301.5 9636800 98.5% 9492248 135.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NZ_CP022686 1,547,110 G→C 20.7% intergenic (+22/‑12) CIW80_RS07710 → / → CIW80_RS07715 tRNA‑Met/tRNA‑Met

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0226861,547,1100GC20.7% 92.4 / 4.9 63intergenic (+22/‑12)CIW80_RS07710/CIW80_RS07715tRNA‑Met/tRNA‑Met
Reads supporting (aligned to +/- strand):  ref base G (36/13);  new base C (9/3);  total (47/16)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAGCTGCTATTGGC  >  NZ_CP022686/1546971‑1547238
                                                                                                                                            |                                                                                                                                
ggCAACCAATTATACATTGCTGAAGTCACGCAGTCCGCTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAg                                                                                                                                  <  4:392745/139‑1 (MQ=17)
cGCAATCAATAAAGATTTGATGAATTAAAGGAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAg                                                                                                                                  <  6:680477/140‑1 (MQ=17)
cGCAACCAATTAAAATTTGATGAAGAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAg                                                                                                                                  <  7:213497/140‑1 (MQ=255)
  cAACCAATTAAAATTTTATGAAGTAAAGCACTCCGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCTGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAg                                                                                                                                  <  2:462682/138‑1 (MQ=255)
   aaCCAATACAAAATTGCTGTAGTAAAGCAGTACGGGGACGCGGGGTGGAGCAGCATGGTAGCGCGTCGGGCTCATAACCCGAAGGTCGTCGGTGCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCAg                                                                                                                               <  5:745141/140‑1 (MQ=17)
             ctttttATGAAGTCACCCATTACCGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAATGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCAGTACGGTGa                                                                                                                       <  2:868028/136‑1 (MQ=14)
               tttGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAATATTAGATGAAAAAAAGCACTACGGTgcctgg                                                                                                                   >  6:355382/1‑135 (MQ=17)
                  ctagcaGTAAACCAGTACGCTGAAGCGGGGTGGAGCAGCCTGTTAGCGCGGCGGGCTCATAACCCGAAGGGCGTCGGGTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAAAAAAGCAGTACGGTGACGCgggg                                                                                                                <  5:1001145/135‑1 (MQ=14)
                  catgaACTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTAGATGAATTAACGCAGTACGGTGACGCgg                                                                                                                  <  1:16246/137‑1 (MQ=14)
                   atgaAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAATTTTGAGCAAAAAAAGCAGTACGGTGAGTCGGGGt                                                                                                               >  5:1098517/1‑140 (MQ=17)
                     gaAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATGTGAGGTTATAAAGCAGAACGGTGAGGCGGGGt                                                                                                               >  2:1155535/1‑138 (MQ=17)
                       attatcgCAATACTGTGACGCGTGGTGGACCAGCCTTGTCGCTCGGCGGGCGCATAAGCCGAAGGGCGGAGGGTCCAAACCGTCCCCCGCAACCAAT‑AAAAATTTCCTGAAATCACCCACTACGGTGACGCGGGGTGGag                                                                                                           <  8:272271/134‑1 (MQ=2)
                       agacacgCAGTACGGTGACTCGGGGTGGAGCAGCATGGTAGCTCGTCGGTCTCATAACCCGAAGGTCGGCGGGGCAAATCCTGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGag                                                                                                           <  5:131266/134‑1 (MQ=14)
                       aGTAACCCAGTTCGCTGACGCGGGGTGGAGCAGCATGGTAGCTCGGCGGCCTCATAACCCGAAGGGCGTCTGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAACGCAGTACGGTGACGCGGGGTgg                                                                                                             <  1:85015/138‑1 (MQ=14)
                            aGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑GAATATTTGATGAGAAAAAGCGGTACGGTGCCGCGGGGTGGagctgac                                                                                                      >  7:28169/1‑136 (MQ=14)
                                ttACGCTGACGCTGTTGGGAGCAGCAGTGTAGCTAGGCGGGCTCATATCCCGAAGGTCGTCTGTTCAAATCCTGCCCCCGCAACCAAA‑CAATTATTTTTGAAAACAAGCACTCCGGTGACGCGGGGTGGAGCAGCCTGGt                                                                                                  <  8:359032/139‑1 (MQ=9)
                                 tACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCACCCAAT‑CAAAATTTTATGAAAAAAAACACTACGCTGACGCGGGCTTGAGCAGACTGGtt                                                                                                 >  5:117743/1‑139 (MQ=14)
                                 tACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CTAAAATTGATGAAAAAAACCAGTACGCTGACGCTGGGTGGCGCAGCCTgcgt                                                                                                 >  5:818869/1‑137 (MQ=14)
                                 tACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCACCGCAACCAAT‑CAAAATTAGATGAAAAAAACCACTACGGTGAAGCCGGGTGGagcagaatgcta                                                                                                 >  7:83163/1‑133 (MQ=14)
                                   cGGTGACGCGGGGTGGAGCATCATGGTAGCTAGTCGGGCTCATAACCCGAAGGTCGACGGTTCAAATCCTGCCCCCGCAACCAAT‑ATAAATTTGTTCTATCAAACCAGTACGCTGCATCGGGGTGGAGCAGCTTGGTata                                                                                               >  8:103103/1‑138 (MQ=11)
                                   cGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑GAAAATTTGAGCTAAAAAACCAGTACGGTGCCGCGGGGTGGCGCTGCCTGGttgg                                                                                               >  6:667646/1‑137 (MQ=14)
                                   cGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTTAGCTTAGAAAGCGCAACGGTGACGCGGGGTGGCGctggctgggtgg                                                                                               >  4:272236/1‑136 (MQ=14)
                                      tGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CTATATTTGTTCAAAAAAACCAGTACGGTGACGCTGGGTGGAGCAGCATGGTTGCtag                                                                                            >  4:336994/1‑138 (MQ=11)
                                        aCGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CTAAATTTGATGAAAGAAAGCAGTACGGTGACGGGGGGTGGCGCAGCCTTGTAGCtcgtc                                                                                          >  5:254997/1‑140 (MQ=14)
                                           cgGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑GAAATTTATTTGAAAAAAAGCGCAACGGTGACGGTGGGTGGCGCAGCCTGGTAGCTGGTCggg                                                                                       >  8:967297/1‑140 (MQ=11)
                                           cgGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑AAAAATTTTATGAAAAAAAGCAGTACGGTGACGCTGGGTGGAGCAGCATGGGAGCTCGTCggg                                                                                       >  6:90267/1‑140 (MQ=11)
                                             gggTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑AAATATTTGATGAGAGAAAGCAGTACGGTGACGGGGGGTGGAGCAGCCTGGGAGCTAGTCGGGcc                                                                                     >  7:1116858/1‑139 (MQ=11)
                                                    gcagcaTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑AAATAATTGATGTAATAAAGCAGTAAGGTGCCGCGGGGTGGAGCAGCCTGGGAGCTAGTCGGGCGCATAAcc                                                                              >  5:1109677/1‑140 (MQ=11)
                                                     cagcaTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑AAATATTAGATGAAAAAAAGCACTACGGTGAAGCGGGGTGGAGCAGCATGGTAGGTCGTCGTGCTCATAAc                                                                               >  2:600785/1‑138 (MQ=11)
                                                        caTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCAGTAAGGTGCAGAGGGGTGGAGCAGACTGGTAGCTCGTCGGGCTCATAACCCGaa                                                                          >  6:525821/1‑140 (MQ=14)
                                                        caTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑AAAAATTTTATGAAAAAAACCTCTACGGTGACGCTGGGTGGAGCAGAATGGTATCTAGTCGTGCGCATACCCGGaa                                                                          >  8:1075900/1‑140 (MQ=11)
                                                        caTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGAAACCAAT‑AAAAAATTGATGAAATAAAACACAAAGATGCAGAAGGGTGGCGCAGACTTCTAGATCGTCGGGCTAATAAccagta                                                                          >  4:76260/1‑136 (MQ=2)
                                                          tGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGATATAAAGCACTACGGTGACGCGGGGTGGAGCAGCATGGTATCTCGTCGGGCTCATAACCCGAAgg                                                                        >  5:819348/1‑140 (MQ=255)
                                                             tAGCTCGTCGGGCTCATACCCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAAAAAAGCAGTACTGTGCATCGGGGTGGAGAAGCCTGGTAGATAGGCGGGCTCATACCCCTAACgtcg                                                                     >  6:733763/1‑140 (MQ=11)
                                                             tAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCCACCAAT‑CAATATTTGTTGTAATAAACCAGTAAGGTGACGAGGGGTGGAGCAGCCTGGTATCTTGTCGGGCGAATAACCCGAAGgtcg                                                                     >  3:326680/1‑140 (MQ=11)
                                                             tAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAg                                                                                                                                  <  3:184436/79‑1 (MQ=39)
                                                              tgCTCGTCGGTCTAATATCCCGAAGGTCGTCGCTTGTAATCATTAACCCGCAACCAAT‑AAAATATTTAAGAAATATCGCAGTACGCTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGgtcgt                                                                    <  8:10708/139‑1 (MQ=2)
                                                                cTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑GTATATTTGATGTTAAAAAGCGGTACGGTGCCGGTGGGTGGAGCTGGCTGGTTGCTAGGCGGTCTGTTAACGGGAAGgtcggcc                                                                  >  7:1121535/1‑137 (MQ=2)
                                                                cTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑GAATATTTGATGATAAAAAGCAGTACGGTGAGGCGGGGTGGAGCTGCCTGGTTGCTGGTGGGGCTGATCCCCCGAAGGtggtcg                                                                  >  5:1124473/1‑140 (MQ=11)
                                                                cTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCACAACGGTGAAGAGGGGTGGAGCATCCTTGTAGCTAGACGGTCTCATACCCAGAACGtcgtcg                                                                  >  3:1095371/1‑140 (MQ=11)
                                                                  cgtcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑GAAATTTTGTTGAAACAAAGCCCTACGGTGCCGAGGGGTGGCGCAGCGTGGTTGCTAGACGGTCACATCACCAGAAAGTCGTCggg                                                                >  8:707355/1‑139 (MQ=2)
                                                                  cgtcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCTAAGGTCGTCGGt                                                                >  3:1224817/1‑140 (MQ=37)
                                                                   ttctggCTCATAACCCGAAGGTCTGCGGTTCTTATCCGGCCCCCGCAACCAAT‑CAAAATTTTATGAATAAAACGATTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGtt                                                               <  5:527739/136‑1 (MQ=11)
                                                                    tcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGTTGAAATAAAGCAGTACGGTGAAGCGGGGTGGAGCAGCCTGGTATCTAGTCGGGCTCTTAACCCGTAGGTCGTCGGt                                                                >  1:372002/1‑138 (MQ=11)
                                                                         cTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCCGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGTAGGTCGTCGGTGCAAAta                                                         >  3:791830/1‑139 (MQ=255)
                                                                         cTCATAACCCGAAGGTAGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑AAAATTATAATGAAATAAACAAGTAATGTGACGCGGGGTGGAGCATCCTGGTAGATCTTCGGGCACAAAACCATAACGTCGTCGGTTGAAGTc                                                         >  7:342036/1‑140 (MQ=2)
                                                                             tAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAg                                                                                                                                  >  4:481404/1‑63 (MQ=40)
                                                                             tAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAg                                                                                                                                  <  3:481404/63‑1 (MQ=40)
                                                                                  cGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATACCCCGAAGGTCGTCGGTTCCACTCCGGCCCCCg                                                >  3:990502/1‑140 (MQ=255)
                                                                                    aaGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAATTTTCATGAAATAAAGCAGTACGGTGACGCTGGGTGGAGCAGACTGGTTGCTCTTCCTGCGCATAACCCGAAGGTCGTCGGTTCAAATACGGGCCCCGcg                                              >  8:1103987/1‑139 (MQ=11)
                                                                                      ggTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCAGGACGGTGACTCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCTGCGGGTAAGCTCCGGCCCCCGcc                                              >  1:580552/1‑137 (MQ=11)
                                                                                        tcgtcgGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAAAAAAGCAGTACGGTGACTCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTAATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCaaa                                            >  1:1160739/1‑137 (MQ=255)
                                                                                          gtcgGTTCAAATCCGGCCCCCGCAACCAAT‑CAATATTTGATCAAAAAAAGCAGTACGGTGACTCGGGGTGGAGCAGCCTTCTAGCTCGTCGGGCGCATAACCCGTCTGTCGTGCGTTAAAATCGGGCGCACGCAAACAAt                                        >  8:721859/1‑140 (MQ=11)
                                                                                          gtcgGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTAGATGAAAAAAAGCAGTCCGGTGACGAGGGGTGGAGCTGCCTGGTAGCTAGCCGGGCGCATACCCCGTAGGTCGTCGGTTCGAATCCGGCCCCCGCTACCatt                                        >  6:784254/1‑138 (MQ=11)
                                                                                           tctgatCAACTCCGGCCCCCGCAACCATT‑AAAACTTAGATGAATTAAACCACTACTGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAtt                                       <  6:128291/135‑1 (MQ=11)
                                                                                           tcgGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTAAAATCAGGCACCCGCAACCAAtt                                       >  4:606593/1‑140 (MQ=255)
                                                                                             ggTTCAAATCCGGCCCCCGCAACCAAT‑AAAAAATTGTTCAAAAAAACCAGTACGGTGACGCGGGCTGGCGCAGAATTGTATCTCGTCGTGCGAATAACGCGAACGTCGACGGTTAAAAACCGGCACCCCCCAACAAtt                                       >  2:403647/1‑138 (MQ=2)
                                                                                               ttCAAATCCGGCCCCCGCAACCAAT‑CAATATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGCGCAGCCTGGTAGCTCGTCGGGCTCTTAACCCGAAGGTCGTCGGTTCAAATCCGGCGCCCGCCACCAATttatt                                   >  3:20783/1‑140 (MQ=14)
                                                                                                gtcaaTCCTGCCCCCGCAACGAATACTAAAGCTG‑TGAATTTACGGAGTCCGGTGACGCGGGGTGGAGCAGCCTGGGAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATttatta                                  <  6:438403/137‑1 (MQ=14)
                                                                                                           ccccGCAACCAAT‑CAAAATTAGATGAAATAAAGCAGTACGGTGACGCgg                                                                                                                  >  1:316527/1‑49 (MQ=255)
                                                                                                           ccccGCAACCAAT‑CAAAATTAGATGAAATAAAGCAGTACGGTGACGCgg                                                                                                                  <  2:316527/49‑1 (MQ=255)
                                                                                                                 aaCCAAT‑CAATCTTTGATTAACTGAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGc                 <  5:271319/140‑1 (MQ=17)
                                                                                                                  cccAAA‑CATACTTGGATGAAATCAAGCCGTCCCGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCa                <  4:393089/139‑1 (MQ=17)
                                                                                                                   gctaT‑CATAATTTGATTAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCaa               <  3:547997/137‑1 (MQ=255)
                                                                                                                      aT‑CAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCACCCAATTTATTAGAATGCTGACAAACCGCAAAgc            >  6:560329/1‑140 (MQ=255)
                                                                                                                      aT‑CAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAgc            >  4:858867/1‑140 (MQ=255)
                                                                                                                      aT‑CAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAgc            >  8:709967/1‑140 (MQ=255)
                                                                                                                         cAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAgc            >  1:780511/1‑138 (MQ=255)
                                                                                                                                tgatgaAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAACTCCGGCCACCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAGCTGCTATTgg   >  6:70521/1‑140 (MQ=255)
                                                                                                                                 gatgaAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTTACAAACCGCAAAGCTGCTATTggg  >  6:1076574/1‑139 (MQ=255)
                                                                                                                                            |                                                                                                                                
CGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAAT‑CAAAATTTGATGAAATAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTTATTAGAATGCTGACAAACCGCAAAGCTGCTATTGGC  >  NZ_CP022686/1546971‑1547238

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A