Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F13 I0 R1
|
203 |
11425.2 |
8793538 |
98.4% |
8652841 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,394,291 |
C→G |
14.9% |
E114Q (GAA→CAA) |
chuS ← |
hematinate‑forming heme oxygenase ChuS |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,394,291 | 0 | C | G | 14.9%
| 497.9
/ 25.5
| 254 | E114Q (GAA→CAA) | chuS | hematinate‑forming heme oxygenase ChuS |
| Reads supporting (aligned to +/- strand): ref base C (54/133); new base G (32/2); total (119/135) |
| Fisher's exact test for biased strand distribution p-value = 3.10e-13 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 256 total aligned reads displayed.
TCTCATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGACTGCGTATTCATT > NZ_CP022686/2394153‑2394429
|
ctcATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCtt < 6:712287/140‑1 (MQ=255)
cagcGGTGATAAAACGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTTAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCtt < 4:388430/135‑1 (MQ=255)
cATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCTTATCGGTATTGTCGGTTGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTg < 2:988622/140‑1 (MQ=255)
aaTCGGGGATAACCCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTg < 6:971865/139‑1 (MQ=255)
aTCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGa > 2:763695/1‑140 (MQ=255)
aTCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTCGCATAAACTTTTACTAATGCATCGCCCTGTTGCTCAAAGAACTGAATAATCTGGCGTTTGCCACGAGACGTGTTTTCtttta > 6:32231/1‑138 (MQ=255)
tCGGTGATAACCCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGGCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCACAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGAt < 8:638981/140‑1 (MQ=255)
tCGGTGATAAACCGTGCCAGCAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGCTCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGAt > 2:673024/1‑140 (MQ=255)
tCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGAt > 6:506017/1‑140 (MQ=255)
ggTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGAAGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGAt > 4:285168/1‑138 (MQ=255)
tGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGtttgtttgtgttgt > 1:1028296/1‑134 (MQ=255)
gATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGa < 5:325363/140‑1 (MQ=255)
aCCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAaca < 1:356239/140‑1 (MQ=255)
aCCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAaca < 7:688386/140‑1 (MQ=255)
ccGTGCCAGAAGCGCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCTCGAGCCGTGTTTTCTTTGATGTGGAAAacac < 1:1052800/140‑1 (MQ=255)
cGTGCCAGAAGCGCACTCCATGCCGCCATATCGGTATTGGCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAACGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑t < 5:1027351/140‑1 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATTATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTAGATGCTGTGGATATCCC‑Tgg > 6:81747/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATTGGGAAAACCC‑Tgg > 6:110700/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑Tgg > 1:474926/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑Tgg > 1:803876/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCTTTGTTGTGGAAAACAC‑Tgg > 7:701173/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTGTCGTTGATGTGGAAAACAC‑Tgg > 6:187251/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTACGCCACGAGCCGTGTTTTCTTTTATTTGGAAAAAAC‑Tgg > 8:27262/1‑140 (MQ=255)
tGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACGGAATACTCTGGCGTTCGCCACGAGCAGTGTTTTATTTGTGGTGGAAAACAC‑Agg > 5:445375/1‑140 (MQ=255)
ccAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGcc > 8:366773/1‑140 (MQ=255)
ccAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTGTGTTTGTTGGTGAAAACAC‑Agg > 4:198578/1‑138 (MQ=255)
aaGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCatt < 5:464969/140‑1 (MQ=255)
cTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTGTTTGCTGGTGCAAACAA‑AGGCCCatggattg > 3:238857/1‑138 (MQ=255)
cATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGaaa < 6:499129/140‑1 (MQ=255)
cATCCCGCCATATCGGTATTGTCGGTGGAATAAACTTTTAGTAATGCATCGCCCTGATGATCAACGAACTTAATACTCTGGCGTTCGCCACGAGCCGGGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGaaa < 7:995501/140‑1 (MQ=255)
aTGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCACTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGCGCCGTGTTTTGATTGATGTGGAAAAAAC‑TGGGCCAATGTTTTTGaaaa > 5:989345/1‑139 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTTTTGTGGTAAACAC‑AGGCCCatttattgttaaaaa > 1:194422/1‑133 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGaaa < 4:887184/138‑1 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACa < 1:712116/140‑1 (MQ=255)
tGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTGTTGTTTTATGTGGAAAAAAC‑AGGGCCAatgtttgatagaaa > 7:315319/1‑134 (MQ=255)
accATATCGGTATTGTGGGTGGAATAAACTTTTAGTAATGCATCGCCCTGATGATCTAAGCACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTAGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGa < 4:825216/137‑1 (MQ=255)
ccATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGGTTGATGTGGAAAACAC‑TGGCCCCTTGATTGTGAAACAGACGt > 6:790862/1‑140 (MQ=255)
ccATATCGGTATTGTCGGTGGAATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGCTCCGTGGTTTAGTTGATGTGGCTAACCC‑GGGGGCAGTGATTGCGacaccgtcgg > 6:30380/1‑134 (MQ=255)
cATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTTGTAAAAAC‑TGGCCCATTGAATTAGAAACAGACGTa > 6:508147/1‑140 (MQ=255)
cATATCGGTATTGTCGGTGGCATAAACTTTTAGTAAAGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTAGCCACTAGCCGTGTTTTATGTGATGTGTCAAAAACATGCCCCATT‑ATTTAGAAACataagga > 5:757137/1‑134 (MQ=255)
tatCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTa > 4:867143/1‑138 (MQ=255)
cGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATcc < 2:58748/140‑1 (MQ=255)
aTTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAgcg < 7:188648/140‑1 (MQ=255)
tCGGTTGCATAAACTTTTAGTAATGCATCGCCCTTATGATGAAAGAACTGTATACTCTGGCGGTCGCCACGAGCCGTGTTTTCTTTGATGTGGATAACAC‑TGGCACATTGATTGAGAAACAGACGTAAATCCAgggcgcg < 8:837220/140‑1 (MQ=255)
tCGGTGTCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAgcgcg < 3:739797/138‑1 (MQ=255)
tCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAgcgcg < 3:548213/138‑1 (MQ=255)
tCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTGTTTGTTGTTGTAAAAAA‑AGGCCCATTGATTGAGAAACATACGTAAATAAAgcgcgcc > 6:1011832/1‑139 (MQ=255)
gcGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGCTCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAgcgcgcg < 8:31955/139‑1 (MQ=255)
gcGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAgcgca < 4:969592/137‑2 (MQ=255)
ggTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGcgcgcgcg < 8:237620/140‑1 (MQ=255)
tGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAAAAGACGTAAATCCAGCGCGCCCGGa > 8:894784/1‑140 (MQ=255)
ggCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTGATTTTTTAAAAAC‑TGGGCCAATGATTGTGAAAAAAACGTAAAAACAGCGCCCCCGGAt > 7:178064/1‑140 (MQ=255)
gCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTCTTTGTTTTTGTAAACAC‑TGGCCCAATGTTTTAGAAAAAGCCATAAAAACACCCCCCGCGGa > 3:126079/1‑138 (MQ=255)
cATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCCCGAGCCGTGTTTTCTTTGATGTGGTAAACAC‑GGGCCCATTGATGGCTAAACAGACGTAAATCCAGCGCGCGCGGATTg > 8:454741/1‑140 (MQ=255)
tAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAg < 1:714643/140‑1 (MQ=255)
tAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTTTTTTATTTGGAAAACAC‑GTGTCCCTTGATTTTGAAACAGCAGTAAATCCCACGCGCGCGGAATgtg > 5:214616/1‑138 (MQ=255)
aCTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTGTTTTTGAAAACAC‑TGGACCAATGATTTAGAAACAAACCTAAATCCACCGCCCGCGGGGTGAgg > 3:1085423/1‑138 (MQ=255)
tttATTAATTCATCTCCCTTATTATCAAAGAACTGAATACTGTGGAGTGCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAA‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCTGATTGAGGATCaa < 2:450829/140‑1 (MQ=255)
tttAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCaa < 7:513512/140‑1 (MQ=255)
aTGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTTTTTGATGTGGGAAACAC‑AGGCCCCATTATTTCGAAAAAGACGTAAATACAGCGCCCCCCGCTTGAGGATAAATACGGCa > 1:292976/1‑140 (MQ=255)
tGCATCGCCCTGATGATCAAAGCACTGAATACTCTGGCGTTCGCCACGAGCCGTGTGTTCTTTGATGTGGAAAAAAC‑AGGCCCAGTGAGTTAGAAACACACGTAAATACACCGCGCGCCGATTGCGGATAAAtaaagcat > 7:798562/1‑133 (MQ=255)
tGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTATGTGATTTGTAAAACAC‑TGGCCCATTGATTGATAAACATACGTAAAAACCACGCGCCCGGATTTAGGGTAACACCGGCaa > 6:134456/1‑139 (MQ=255)
gCCCTGATGATCAAAGAACTGACTACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGt < 5:653424/140‑1 (MQ=255)
cccTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGGTTTTTTTTTTGTGGAAAACAC‑AGGTCCATTTATTTAGAAAAAAACCTAAATACAACCCGCCCCGATTCATGAACAAAACGGCATGTCCggt > 1:682730/1‑138 (MQ=255)
gatgatCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTTATGTGGAAAAAAA‑TGGCCCATTGAATTAGAAACAAACGGAAAAACACACCGCGCGGATTGAGGCTCAATCCCGCAAGTACGCTCaaa > 6:174949/1‑140 (MQ=255)
atgatCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTGTTTGATGTGGTAAACAC‑TGGGCCATTTATTGAGAAACGCCCGTAAATCCACCGCGCGCGGCTTGAGGTTAAATCCGGCATGTCCGTTCAAAt > 2:216988/1‑140 (MQ=255)
atgatCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGAATTGGAAAAAAC‑AGGCCCATTGTTTTAGAAAAATACGTAAATACAGCCCACCCGGAATGAGGCTCAATACCGCAAGTGCCTTCaaaa > 2:947010/1‑139 (MQ=255)
tgatCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCCTTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATAAATCCGGCAAGTCCGTTCaaa > 3:638234/1‑138 (MQ=255)
aaGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTGTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGtt < 7:383463/140‑1 (MQ=255)
aGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAAAAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGGTCAAAAGCTGGgtt > 2:616902/1‑140 (MQ=255)
aaCTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTATTTTATGTGGAAAACAC‑TGGCCCATTGATTTTGAAACAGACCTAAATACACCGCGCCCGGATTTAGGATCAATACGGCATGTCCGTTCAAATGCTGGttt > 4:56822/1‑138 (MQ=255)
tGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTtgtg < 3:843417/138‑1 (MQ=255)
aaTACTCTGGCGTTCGCCACGAGCCGTGTTTTATTTGATGTGGGAAACAC‑TGGCCCCTTGATTTTGAAAAAGACGTAAATCCCGCGCGCGCGGATTGAGGTTCAAACCGGCATGTGCGTTCAAATGCTGGTTTGTGCACg > 6:543726/1‑140 (MQ=255)
tACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACg < 4:48616/138‑1 (MQ=255)
tACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCa < 2:301965/140‑1 (MQ=255)
tACTCTGGCGTTCGCCACGAGCAGTTTTTTCTTTGATGTTGAAAACTC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCTCGCGGTTTGAGGATCAATCCGGCATGTGCGTTCAAATGCTGGTTTGTGAACGCa < 6:941744/140‑1 (MQ=255)
ctGGCGATCGCCACTAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCAcc < 3:58632/138‑1 (MQ=255)
tGGCGTTCGCCACGAGCCGTGTGTTCTTTGATGTGGAAAAAAC‑AGGGCCAAGGGTATTGAAACAGGCGTAATAACATAGCGCGCGGAATGAGGACCAATTCGCCAATGCCGGTCAAAAGCTGGGTTGTGTACACACGAAc > 2:521562/1‑140 (MQ=255)
tGGCGTTCGCCACGAGCCGTGGTTTCTTTGATGTGGAAAACCC‑TGGCCCATTGATTGGGTAACAGACGGAAATCCCGCGCGCGCGGATTGAGGATCAATCCGGCATGTGCGGGGAAATGGTGGGTTGTGAACGCACCAAc > 8:412650/1‑140 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGACACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 8:1001973/140‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCaa < 3:285168/138‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCaa < 4:380402/138‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCaa < 4:713740/138‑1 (MQ=255)
ggCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑GGGCCCATTGAGTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGGTTGTGAACGCACCAACt < 6:418095/140‑1 (MQ=255)
ggCGGTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAACCAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGAGTGAGGATCAATCCGGCAGGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACt < 1:541646/140‑1 (MQ=255)
gCGTTCGCCACGAGCCGTGTTTTGTTTGCTTTGGAAAACAC‑TGGCCCAATGCTTGAGAAACAGACGTAAAGGCAGCGCGCGCGGATTGACGGTCAATCCCGCATGTGCGGTGAAATGGTGGGTTGTGAACGCCCCaca > 4:584844/1‑136 (MQ=255)
gCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTTATAAACAGAAGTAAATACAGCGCGCGCGGATTTAGGATCAATCCGGCATGTCCGTTGAAATGCTGGGTTGTGAACGCACCAAc > 4:991706/1‑138 (MQ=255)
gCGTGCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACtt < 1:840121/140‑1 (MQ=255)
ttCGCCACGAGCCGTGTTTTGTTTGATGTGGAAAAACC‑TGGCCCATTGATTTAGAAACAGACGTAAATAAAGCGCGCGCGGGTTGAGGATCAATACGGCATGTCCGTTCAAATGATGGTTTGTGAACGCACCAACTTGtt > 8:736722/1‑140 (MQ=255)
tagcaaCGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTTAGAAACAGACGTAAATCCAGCGCGAGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGt < 4:792340/133‑1 (MQ=255)
gCCACGAGCCGTGTTTTCTTATATGTTGAAAAAAC‑AGGCCCATTGATTGAGAAACAAACGAAAAAAAATCGCGCCCGGATTGAGGCTCAATACCGCATGTCCGTTGAAATTCTGGTTTGTGGAAGCACCCACATGTTGAt > 8:312468/1‑140 (MQ=255)
ccACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTTATg < 1:153902/140‑1 (MQ=255)
cACGAGCCGTGTTTTCTTTGATGTTGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCAt < 4:107497/138‑1 (MQ=255)
ccGAGCCGTGTGTTGTTTGATGGGGAAAACTC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATGGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGa < 2:851601/139‑1 (MQ=255)
aataGCCTTGTTTTCTGTGATGTGGAAACCAC‑TGGACCCTTGATTGAGAAACAGAAGTAAATCCAGCGCGCGAGGATTGAGGATCAATCAGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATg < 3:892229/135‑1 (MQ=255)
aCGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGa < 5:545781/140‑1 (MQ=255)
aCGAGCCGTGGTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGa < 2:1028296/140‑1 (MQ=255)
cGAGCCGTGTTATCTTTGATGTGGAAAACAC‑TGGCCCATTGAATGAGAAACAGACGTAAATCGAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGAc < 7:64897/140‑1 (MQ=255)
gttttgttttATGTGGAAAACAC‑TGGCCCAATTATTGAGTAACAGACGTAAATACAGCGCGCGCGGATTGAGGATAAATACGGCAAGTCCGTTCAAATTCTTGTTTGTGTACGCACCAACTTGTTGATGGGCGTCGTAtt > 8:512232/1‑140 (MQ=255)
tCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGACTGCGTATTCa < 4:68616/138‑1 (MQ=255)
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TCTCATCGGTGATAAACCGTGCCAGAAGCTCACTCCATGCCGCCATATCGGTATTGTCGGTGGCATAAACTTTTAGTAATGCATCGCCCTGATGATCAAAGAACTGAATACTCTGGCGTTCGCCACGAGCCGTGTTTTCTTTGATGTGGAAAACAC‑TGGCCCATTGATTGAGAAACAGACGTAAATCCAGCGCGCGCGGATTGAGGATCAATCCGGCATGTCCGTTCAAATGCTGGTTTGTGAACGCACCAACTTGTTCATGGACTGCGTATTCATT > NZ_CP022686/2394153‑2394429
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
