Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F13 I0 R1
|
203 |
11425.2 |
8793538 |
98.4% |
8652841 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,951,512 |
G→T |
17.3% |
D36Y (GAT→TAT) |
topA → |
type I DNA topoisomerase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,951,512 | 0 | G | T | 17.3%
| 288.0
/ 10.7
| 151 | D36Y (GAT→TAT) | topA | type I DNA topoisomerase |
| Reads supporting (aligned to +/- strand): ref base G (81/34); new base T (2/32); total (83/68) |
| Fisher's exact test for biased strand distribution p-value = 5.54e-12 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 160 total aligned reads displayed.
TCCTGGAAGAATCAAATTAGGTAAGGTGAATATGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCA > NZ_CP022686/4951376‑4951651
|
cTGGAAGAATCAAATTAGGTAAGGTGAATATGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGAtt < 3:991318/138‑1 (MQ=255)
gaaTCAAATTAGGTAAGGTGAATATGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGAcc < 5:117697/140‑1 (MQ=255)
aTCAAATTAGGTAAGGTGAATATGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAg > 8:961647/1‑140 (MQ=255)
aTCAAATTAGGTAAGGTGAATATGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAg > 5:572881/1‑140 (MQ=255)
aTCAAATTAGGTAAGGTGAATATGGGTAAAGCTCTTGTCATCGTTGAGTCACCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCTTCGGTCACATCCGCGATTTGCCGACCAg > 6:440894/1‑140 (MQ=255)
cAAATTAGGTAAGGTGAATATGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAg > 3:482873/1‑138 (MQ=255)
cAAATTAGGTAAGGTGAATATGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAg > 4:1115668/1‑138 (MQ=255)
cAAATTAGGTAAGGTGAATATGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAg > 4:762521/1‑138 (MQ=255)
aGGTAAGGTGAATATGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCaa < 8:788271/140‑1 (MQ=255)
aGGTAAGGTGAATATGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGGCGGTCACATCAGCGATTTGCCGACCAGTGGCTCaa < 6:20592/140‑1 (MQ=255)
aGGTAAGGTGAATATGGGTAAAGCGCTTGTCATCGTGTAGGCCCCCGCCAAACCCAAAACGATCAACCACTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCaa < 6:774833/140‑1 (MQ=255)
gTAAGGTGAATATGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACt > 6:1063529/1‑140 (MQ=255)
gAATATGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCaa > 3:135557/1‑138 (MQ=255)
aaTATGGGTAAAGCTATTGTCAACGTTGAGGCCCCGGCAAAAGCCAAAACTATCAAAAAGTATCTGGGTTGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCaaaac < 2:1020075/140‑2 (MQ=255)
tatGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGGGGTGAAATCCAGCGTCGGTCCCATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAaga > 7:529813/1‑140 (MQ=255)
ggTAACGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAACCGATCAACAAGTATCTGGGTTGTGACTACGTGGGTAAATCCCGCGTCGGTCACATCCGCGATTTGCCGCCCAGTGGCTCAACTGCCAAAACGAGTGc < 2:413457/140‑1 (MQ=255)
ttactgCTCTTGTAATCTTTTTGTCCCGGTCAAAAGACAAAACTATCAACAAGTATCTGGGTTGTTACTAGGTGGTTAAATCCAGGGTCTGTCACATCCGGGATTTGCGGACAAGTGGCTCAACTGCAAAAAAGCGGGcc < 8:10618/135‑1 (MQ=255)
ttAAAGCTCTTGGCATCGTTGAGGCCCCGGCAAAAGACAAAACGATCAACAAGTATCGGGGTAGTGAATACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGGGcc < 6:931287/139‑1 (MQ=255)
gaaaaGCTGTTGTCAGGGTTGTGTCCCGGGCAAAACCCAAAACGATCAACATGTATCTGGGTTGTGACTCGGGGGTGAAATCCAGCGTCGGGCACATCCGCTATTTGCCGACCAGGGGCTCAACTGCCAAAAagaggg < 4:1057805/136‑3 (MQ=255)
gTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGcc > 1:576631/1‑140 (MQ=255)
gTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGcc > 1:816949/1‑140 (MQ=255)
aaaGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAATGAGTGcc > 4:22942/1‑138 (MQ=255)
aaaGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGcc > 3:492091/1‑138 (MQ=255)
aaGCTCTTGTCATCGTTGAGTCCCCGGCAAAATCCAAATCGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTACCCTGCCAAAAAGAGTGCCGAc > 1:1133646/1‑140 (MQ=255)
aaGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGCCCAGTGGCTCAACTGCCAAAAAGAGTGCCGAc > 7:70937/1‑140 (MQ=255)
tttGTCATCGGTTCTTCCCCGGAAAAAGCCAAAACGATCAAAATGTTTCTGGTTAGGGACTACGTGGTGAAATCCCGGGTCGGACACAGCCGCTATTTGCCGACCAGGGGCTCAACTGACAAAAATTGGCCCGActct < 4:224805/137‑1 (MQ=255)
gTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTCCCTc > 1:387332/1‑140 (MQ=255)
gTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACAGCCAAAAAGAGTGCCGACTCTACCTc > 8:463535/1‑140 (MQ=255)
tCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTAcag > 3:869083/1‑136 (MQ=255)
cGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTccacca > 6:1047591/1‑140 (MQ=255)
cGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTccacca > 7:664860/1‑140 (MQ=255)
cGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTccacca > 1:830594/1‑140 (MQ=255)
ttGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTCCCTccaccc > 3:992792/1‑137 (MQ=255)
ttagcccccGGAAAAAGCAAAAACCTTCAAAATTAAGCTGGGTAGTGCCTACGTGTTTAAATCCAGCGGCGGTCACATCGGCTATTTGCCGACCAGTGGCTAAACTGCCAAAAACCGTGCCGACTCTACCTCCACCaa < 4:432344/133‑1 (MQ=255)
tgcgTCCCCGCCAAACGCAAAAAGGATCAACAAGTATCGGGGTAGTGACAAGGTGGTTAAATCCCGGGGCGGTCACACCCGCGATTTGCCGACCAGGGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCaa < 4:1058463/135‑1 (MQ=255)
tGAGGCCCCGGCAAACGCCAACACGATCAACATGTATGTGGGTAGTGACTCGGGGGTTAAATCCTGGGGGTGCCACACCCGCTATTTGCCGACGTGGGGCTCACCTGCCAAAACGTGGGCCGACTCTACCTCCACCAAGa < 7:565775/140‑1 (MQ=255)
aGTCCCCGGCAAACGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGAGAAATCCAGCGTCGGTCACATCCGCGATTTGCAGACCAGTGGCTCAAATTCCAAAAAGAGTGCCGACTCAACCTCCACCAAGAcc > 1:773120/1‑139 (MQ=255)
cgtcAAAAGCCAAACCGATCACCACGTATCTGGGTAGTTACTACGGGGTGAAATCCCGCGTCGGTCACATCCGCGATTGCCCGACCAGTGGCTCAACTGCCAAAAAGCGTCCCGACTCTACCTCCACCAAGACGGCTaaa < 5:750187/137‑1 (MQ=255)
cgtcAAAAGCCAAAACGATCAACAATTATCGGGGTAGTCACTACGTGGTGAAATCCAGCGGCGGTAAAATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTa < 4:952541/135‑1 (MQ=255)
cGGCAAACCCAAAAACGATCACAAAGTCTCTGGGTAGGGCCTACGGGGTTAAAGCCCGCGTCGGTCACAGCCGCTATTTGCCCCCCAGGGCCGCACCTGCCAAAACGTGGGCCGACTCTACCTCCACCAAGACGGCTaaa < 2:1084663/140‑1 (MQ=255)
ggCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTaaaa > 7:89912/1‑140 (MQ=255)
aaaacGCCAAAACGATCAACAAGTTGCTGGGTTGTGACTACGTGGTGAAATCCAGCGGGGGTAACATCCGCTATTTGCCTACCAGTGGCTCAACTGCAAAAAAGAGGGCCGACTCTACCTCCACCAAGACGGCTAAAAAg < 2:91774/139‑1 (MQ=255)
aaGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGcc > 8:587548/1‑76 (MQ=255)
aaGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGcc < 7:587548/76‑1 (MQ=255)
aaGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCCCCAAGACGGCTAAAAAGCCt > 5:265162/1‑140 (MQ=255)
ccAAACCGATCAACATGTATGTGGGTTGTGACTACGTGGTTAAATCCAGCGTCGGTCAAATCGGCTATTTCCCCACCAGGGGCTCAACTGCAAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTaaa < 8:220374/140‑1 (MQ=255)
caacaaGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAAc > 6:844194/1‑140 (MQ=255)
acaaattATCTGGGTAGTTACTACGGGTTTAAATCCTGCGGCGGTCACATCCGCGATTTGCCTACCTGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACg < 2:807969/134‑1 (MQ=255)
aacaaGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGaa > 3:1086928/1‑138 (MQ=255)
ttttCTGGTTTGTTAATACGTGTTTAATTCCAGCGTCGGTCAAATCGTCTATTTGCCGACCTGTGGCTAATCTGCAAAAAAGTGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAATGGATGAACGTGgcg < 2:974118/137‑1 (MQ=255)
ttATGTGGTTAGTGACTATGTGGGCAAATCCCGGGTCGGTCACATCGGCTTTTTGCCTACCTGTGCCTCACCTGCCAAAAAGAGGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTATAAAGGATGAACGTGgcg < 8:522632/139‑1 (MQ=255)
ttATGTGGGTAGTTACTAGGTGTGGAAATCCAGCGTCGGACACACCCGCTATTTGCCGCCCAGTGGCTCAACTGCCAAAACGATGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAACGGATGAACGTgg < 4:459881/137‑1 (MQ=255)
ttATGTGGGAAGTGACAACGGGGTCAAACCCCGCGCGGGTAACATCCGCTATTTGCCGACCTGGGGCTCACCTGCCAAAAAGAGGCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTgg < 4:728915/137‑1 (MQ=255)
ttATCTGGGTTGTGACTAGGGGGTTATAACACGGGAGGGTCACAGCCGCGATTTTCCGACACGTGGCTTATCTGCTATAAATCGTGCCGACTCTTCCTGCACCATCACGGCTTAAAAGCCTAAAAAGGATGAACGTGgcg < 8:389133/139‑1 (MQ=255)
gTATGTGGGTTGTTACTTCGTGGTTAAAACCTGCGTGGTTCACATCCGTTATTTGCTGACCTGGGTCTAAACTGCCAAAAAGAGGCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGgcg < 1:219189/140‑1 (MQ=255)
gTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGCCTCTACCGACACAATTACGGCTAGAAAGCCTAAAAAGGTTTAACGTGgcg > 7:647421/1‑140 (MQ=255)
tATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTACACCAAGACGGCTAAAAAGCCTAAAAATGATTAACGTGgcgc > 6:445858/1‑140 (MQ=255)
aTCTGGGTTGTGACTCCTTGGTTAAATCCAGCGGCGGTCAAATCCGTGTTTGGCCGACCTGTGCCAAAACTCCCAAAACTCGGCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGct < 1:122271/140‑1 (MQ=255)
tCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCAGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGctc > 6:834920/1‑140 (MQ=255)
tCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGGCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGGTAAAAAGCCTAAAAAGGATGAACGTGgcgcgc > 2:458925/1‑138 (MQ=255)
gtttgTGAATACGTGGTTAAATCCTGCGGCGGGAATATCGGTCTTTGGCCGACCAGTGGCACAACTCCCAAAATGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCtctc < 3:11574/134‑1 (MQ=255)
ggTAGGGACTCCGGGGTGAAAACCAGCGGCGGTCAAATCCGCGATTTGCCGACCTGTGGCTCAAGTGCAAAAAACAGGCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCtctc < 3:726222/138‑1 (MQ=255)
gTAGTGACTACGTGGTTAAATCCAGGGTCGGTCACATCCGCTATTTGCCTACCAGTGGCTCAACTGCCAAAAAGAGTCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCg < 4:345834/138‑1 (MQ=255)
gTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGCCTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTc > 6:810764/1‑140 (MQ=255)
tAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGt > 3:267375/1‑138 (MQ=255)
tgtcaCTACGTGGTTAAATCCCGCGTCGGTCACATCCGCTATTTGCCCACCAGGGGCTCAACTGCCAAAACGAGTCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTc < 4:172709/134‑1 (MQ=255)
tgTGACTTCGTGTTTAAATCCCGCGTCGGTCACAGCCGCTTTTTGCCGACCTGGGGCTCAACTGCCAAAATGAGTCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCaa < 6:386029/139‑1 (MQ=255)
tgTGAATAGGTGGTTAAAGCCTGCGGCGGACACAGCCGCTATTTGCCGACAAGTGGATAAACTGCAAAAAAGTGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCaa < 7:1029923/139‑1 (MQ=255)
aGTTACTACGTGGGCAAAACCTGCGGCGGTAACATCCGCGATTTGCCGACCTGTGGCTCAACTCCCAAAATGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTc < 4:16707/138‑1 (MQ=255)
aGTGACTGCGTGGTGAAAGCCCGGGGCGGTCACTTCCGCGATTTGCCGACCTGTGGCTCAAGTGCAAAACAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCaa < 5:1037563/140‑1 (MQ=255)
gTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCTATTTGCCGACCAGTCGCTAAACTGCCAAAAAGAGTGCAGACTCTACCTCCACCAAGACGGCGAAAAACACTAAAAAGGATGAACGTGGCGCTCTCATCAAc > 2:1101129/1‑140 (MQ=255)
gTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGACAAc > 2:414293/1‑140 (MQ=255)
aCTACGTGGTGAAATCCAGCGTCGCTCACATCCCCGAATTGCCGCCCAGTGGATCAACTGCCAAAAACATTTCAGACTCTAACTCCACCAAGACTGCATATAAGCCTAAAAAGTCTGAACTTGGCGCTCTAGTCAccctt > 8:1037064/1‑138 (MQ=255)
aCTACGTGGTGAAATCCAGCGACGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTTCCTCCACCAAGACGGCTAAAACGCCTAAAAAGGATGAACGTGGCGCTCTCGTAAACCGt > 2:315452/1‑140 (MQ=255)
taggtggtgAAATCCAGCGGGGGTCACTCCCGCTTTTTGCCCCCCTGTGGCTCAACTGCAAAAACTAGGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTAt < 5:320575/137‑1 (MQ=255)
taggtggtgAAATCCAGCGGCGGTCACATCCGCTATTTGCCCACCAGGGGCCAAACTGCCAAAAAGAGGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTAt < 2:284542/137‑1 (MQ=255)
tACGGGGTTAAACCCAGCGTGGGTAACATCCGCGTTTTGCCGCCCAGTGGCGCAACTCCCAAAAATCGCCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTAt < 2:68633/140‑1 (MQ=255)
aaggtggtgAATTCCTGCGGCGGGAAAATCCGCTATTTCCCCACCTGTGCCTAACCTCCCAAAAAGAGCGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTAt < 5:481319/137‑1 (MQ=255)
aaCGGGGTGAAACCCCGCGGCGGACACATCCGCTATTTGCCGACCAGTGGCTCAACGGCCAAACCGAGGCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTAt < 7:850050/139‑1 (MQ=255)
cctgggttAAACCCCGCGGCGGCCACTTCCGCGATTTGCCTACGTGTCGCACAACTGACAAAAAGCGCGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATg < 5:488576/136‑1 (MQ=255)
aCGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATg > 8:406027/1‑140 (MQ=255)
gtggtgAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATg > 3:10233/1‑138 (MQ=255)
ggttAACTCCAGCGGCGTCCACATCCGCTTTATGCCGACCCGGGGCTCAACGGCCAAAAAGAGGCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATggg < 3:1093558/138‑1 (MQ=255)
gtgAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGt > 1:772171/1‑140 (MQ=255)
cccccGTCGGCCACATCCGCGATTTGCCGACCAGGGGCCCAACTGCCAAAAACAGGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCg < 8:866589/136‑1 (MQ=255)
gcggcgGGCACATCCGCGATTTGCCCACCTGTGGCTCAACTGCAAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTgg < 2:61457/140‑1 (MQ=255)
gcggcgGACACATCCGCTATTGGCCGCCCTGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTgg < 6:259392/140‑1 (MQ=255)
gCGTCGGTCACATCCGCGATTTCCCGACCAGGGGCTCAACTGCCAAAAAGAGTCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTgg < 8:65126/140‑1 (MQ=255)
gTCGGTAACAGCCGGTATTTGCCGACCAGGGGCACAACTGCCAAAAAGAGGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGca < 1:1084521/140‑1 (MQ=255)
gTCGGCCACATCCGCTATTTGCCCACCAGTGGCTAAACTGCCAAAAATAGTGCCGACTCTACCTCCACCAAGACGGCTTAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGca < 5:872055/140‑1 (MQ=255)
acacaTCCGCTATTTGCCGACCTGGGGCTCAACTGCAAAAAAGCGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAAtt < 1:511197/139‑1 (MQ=255)
cacaTCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAAt > 3:524382/1‑138 (MQ=255)
caTCCGCGTTTTGCCGACCTGTGGCTCTCCTCCAAAAAAGTGGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTggg < 1:722702/140‑1 (MQ=255)
cgcgATTTGCCGCCCAGTGGCTCAACTGCCAAAAAGCGCGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCGCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGgc < 8:827309/140‑1 (MQ=255)
gcgTTTTGCCGACCAGGGGCCCAACTGCCAAAAAGCGGCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGgcg < 1:870367/140‑1 (MQ=255)
gcgATTTGCCGACCTGGGCCTCAACTCCAAAACAGCGTCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGgcg < 2:828724/140‑1 (MQ=255)
gcgATTTGCCGACCAGTGGCTAAACTGCCAAAAAGAGTCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGgcg < 1:310131/140‑1 (MQ=255)
gcgATTTGCCGACCAGGGGCCCAACTCCAAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGgcg < 5:1010096/140‑1 (MQ=255)
cgATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGgcgc > 1:1054911/1‑140 (MQ=255)
gATTTGCCGACCTGTGGCTAACAGGCCAAACAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCa < 6:623562/140‑1 (MQ=255)
|
TCCTGGAAGAATCAAATTAGGTAAGGTGAATATGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCA > NZ_CP022686/4951376‑4951651
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
