Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A26 F12 I0 R1
|
131 |
9881.0 |
7547414 |
98.3% |
7419107 |
134.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,566,217 |
A→C |
17.9% |
T740P (ACG→CCG) |
CIW80_RS07780 → |
ImcF‑related family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,566,217 | 0 | A | C | 17.9%
| 300.9
/ 26.8
| 177 | T740P (ACG→CCG) | CIW80_RS07780 | ImcF‑related family protein |
| Reads supporting (aligned to +/- strand): ref base A (80/62); new base C (3/32); total (83/94) |
| Fisher's exact test for biased strand distribution p-value = 1.18e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 184 total aligned reads displayed.
ATGGCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGACCTACCTCACCCG > NZ_CP022686/1566079‑1566353
|
aTGGCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGaaaaa > 3:626851/1‑139 (MQ=255)
aTGGCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAAc > 4:213189/1‑140 (MQ=255)
aTGGCAGATGCCCGTCAGTCGCCCCTGATTGCGCTTACGGACACCCTCGCGTGGCAGGCTGCGACAGGCAGGGAAAACCGTCTTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGCCAA‑GGAGAAAAc > 3:428956/1‑140 (MQ=255)
ggCCGATGCCCGTCCGTCGCCAGTGATTGCGCTGACGGACACCCTCGGGTGGCAGGCGGCGACAGGAAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAAc < 7:225075/138‑1 (MQ=255)
ggCCGATGCCCGTCAGTCGCCACTGATTGCGCTGCCGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAAc > 2:318790/1‑138 (MQ=255)
ggCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAAc > 6:40838/1‑138 (MQ=255)
ggCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAAc < 1:460156/138‑1 (MQ=255)
ggCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAAc > 2:465926/1‑138 (MQ=255)
ggCCGATGCCCGTCAGGCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCTGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAAcgc < 3:706034/140‑1 (MQ=255)
ggCCGAGGCCCGTCAGGCGCCACTGATTGCGCGGCCGGACACCCTCGCGGGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAAc < 5:529254/138‑1 (MQ=255)
gCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAAcg > 7:381547/1‑138 (MQ=255)
gCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAAcg > 5:721044/1‑138 (MQ=255)
tGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCgcagc > 4:320639/1‑140 (MQ=255)
tGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCgcagc > 4:611542/1‑140 (MQ=255)
gCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCgcag < 1:905928/138‑1 (MQ=255)
ccccGTCAGTCGCCACTGATTGCGATGACGGACACCCTCGCGTGGCAGGCGGCGAAAGGCAGGGAAAACCGTGGTCTGGCAGACTCGCTGGCGAAATCGGCACAGGAACGTTTTAACGGCAA‑GGAGAACACGCCgcag < 6:362719/137‑1 (MQ=255)
cccTTCTGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAACCGCCGCAGCaa < 3:720991/140‑1 (MQ=255)
cccGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCAGAGGACCTGTTTAGCGGCAA‑GGAGAAAACGCCgcagc > 6:118590/1‑138 (MQ=255)
cccGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCaa < 4:488284/140‑1 (MQ=255)
cccGTCAGTCGCCACTGATTGCGCGGACGGACACCCTCGCGTGGCAGGCGGCGAAAGGCAGGGAAAACCGTGGTCTGTCAGCCTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCgcagc < 1:262966/138‑1 (MQ=255)
ccGTCAGTCGCCACTGTTTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACTGGCAGTGAAACCCGTGGTCTGCCAGACTCGCGGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCgcagca < 7:296599/138‑1 (MQ=255)
aGTCGCCACTGATGGCGCTGACGGACACCCTCGCGTGGCTGGCGGCGACAGGCAGGTAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATccc < 2:670342/138‑1 (MQ=255)
tCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GTAGAAAACGCCGCAGCAATCCCGt < 2:853672/138‑1 (MQ=255)
gCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGa > 1:831697/1‑138 (MQ=255)
gCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGa > 1:235975/1‑138 (MQ=255)
gCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGCCGGCGCCAGGCAGGGAAAACCGTGCTCTCTCAGACTCGCTGGCGAACTCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCACTCCCGTGCAg > 3:848795/1‑140 (MQ=255)
tggcgcTGACGGACACCGTCGCGGGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACGCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTgacg < 8:889320/136‑1 (MQ=255)
tGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGCCGACGTGc > 7:369212/1‑138 (MQ=255)
tGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGc > 8:376085/1‑138 (MQ=255)
gACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTc > 8:180138/1‑138 (MQ=255)
acacCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCGGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCg < 7:835414/138‑1 (MQ=255)
cccTCGCGTGGCTGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGACCTGTTTATCGGCAA‑GTAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGc > 7:280811/1‑138 (MQ=255)
cccTCGCGTGGCAGGCGGCGCCAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGc > 1:20381/1‑138 (MQ=255)
tCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTTGCGAAATCGGCACATGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTCAAGGTGACGACGTGCCTGTCGGGCCGCTg > 3:403607/1‑140 (MQ=255)
gggCAGGCGGCGACAGCCAGGGAAACCCGTGGGCTGTCCCCCCCGCTGGCGAAATCGGCACAGGACCTGTTTACCGCCAA‑GCAGAAACCGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGAt < 1:335009/137‑1 (MQ=255)
cAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAAc > 3:539548/1‑140 (MQ=255)
ggcgACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑CGAGAAAACGCCGCAGCAATCCCGGGAAGGTGACTACGTGCCTGTCGGGCCGCTGGATAAAACCtt > 8:552766/1‑138 (MQ=255)
gcgACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCAc > 4:156047/1‑140 (MQ=255)
cgACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCGGGCTAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAACCGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCa < 5:544286/138‑1 (MQ=255)
gACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTTACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCAc > 6:822233/1‑138 (MQ=255)
aCAGGCCTGGAAACCCGTGGTCTTTCAGACTCGTTGGCTAAATCGCCACAGGAAAGGTTTAACGGCAA‑GGAGAAAACGCCGCATAAATACCGTGAAGGTGACGACGTGCGTGTCGGGCCGCGGGAGAAAACCTTCAcg < 2:245428/138‑1 (MQ=255)
ctggctggGAAAACCGTGGGCTGTCAGACTCGCGGGCCAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAACCGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCAcgc < 5:841761/136‑1 (MQ=255)
ccaggTAAAACCGGGGTCTGTAAGCCTCGATGGCGAAATCGGACCGGGAACT‑TTTAAAGGCAATGGACAAACCGCCGCAGCAATCCGGTGATGGGGACGACGTGCCTGTCGGGCCGCTGGATAAACCCTTCAcgccgc < 8:38917/137‑1 (MQ=255)
aaaaCCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCtgctgc > 7:149077/1‑138 (MQ=255)
aCCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTg > 4:767907/1‑140 (MQ=255)
ggggTCTGTCAGACTCGCTGGCTAAATCTGCACAGGAACTGTTAACCTGAAA‑GGACAAACCGCCGCAGCAATCCCGGGACGGTGACGACGGGCAGGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGGTTGc < 8:587948/136‑1 (MQ=255)
gTGGTCTGTCTCACTCGCTTGCGAAATCCGCACAGTAACTTTTTAACGCCAA‑GTTGAAAACGCCGCAGCAATCCCTGGAAGGTGACGAGGTGCCTGTCGGGCCGCTGTATAAAACCTTCACGCCGCTGCTGCGTTTGc < 2:563122/138‑1 (MQ=255)
gTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGc > 7:87497/1‑138 (MQ=255)
gTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGCAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTg < 4:80674/140‑1 (MQ=255)
tCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTggg > 7:192129/1‑138 (MQ=255)
tGTCACACGCGCGGGCGAAATCGGCACTGCAACTGTTAAAGGGCAA‑GGACAAAACGCCGCAGCAATCCCGTGCAGGTGACGACGTGACTGTCGGGCCGCTGGATAAACCCTTCACGCCGCTGCTGCGTTTGCTGGGCg < 5:380565/138‑1 (MQ=255)
ggacAGACTCGCGGGCCAACACGGAACAGTAACTGTTAACCGCAAA‑GCACAAAACGCCGCAGCAATCCCGTGAAGCTGACGACGTGCCTGGCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCg < 6:282771/135‑1 (MQ=255)
tCAGACTCGCTGGCGAAATCGGCACAGGAAGTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAACACCTTCACGCCGCTGCTGCGTTAGCTGGGCGATaa > 4:656545/1‑140 (MQ=255)
tCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAACCCTTCACGCCGCTGCTGCGTTTGCTGGGCGAt > 1:712517/1‑138 (MQ=255)
aGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCACTCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATaa > 6:501606/1‑138 (MQ=255)
aGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATaa > 5:741219/1‑138 (MQ=255)
gACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGc > 3:90228/1‑140 (MQ=255)
gCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTTGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGTAg > 4:335685/1‑140 (MQ=255)
gCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGACTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAg > 3:187120/1‑140 (MQ=255)
tGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAACACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAg > 8:505114/1‑138 (MQ=255)
gctaaaTCGGCACAGTAACTGTTAACCGGCAA‑GCACAAACCGCCGCAGCAATCCCGTGAAGGTTACGACGTGCCTGTCGGGCCGCTGGATAAAACCTACACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAggc < 8:840345/135‑1 (MQ=255)
gCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAggc > 8:788249/1‑138 (MQ=255)
aaaaTCGCCACAGCAACTGTTACCCGGCAC‑GGACAAACCCCCGCCGCAAACCCGTGAAGGTGCCGACGGGCCTGTCGGGCCGCTGGAAAAACCCTCCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAggcgg < 1:135645/137‑1 (MQ=255)
aaaTCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAggcggc > 2:139463/1‑138 (MQ=255)
cGGCCCCGGAACTGTTAAACGGCAA‑GCATAAACCGCCGCCGCAATCCCGTGATGGTGACCACGGGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGAca < 6:668505/138‑1 (MQ=255)
cacaGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGAcagccag > 3:377913/1‑140 (MQ=255)
acaGTAACTGTTTAACGGCAA‑GGAGAAACCGCCGCAGCAATCCCGTGAAGGTGCCGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGAcagcca < 7:713165/138‑1 (MQ=255)
caGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGAcagccag > 6:235512/1‑138 (MQ=255)
caGGAACTGTTAACCGGCAA‑GGAGAAAACGCCCCAGCAATCCCGTGACGGGGACGCCGGGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGAcagccag < 2:570954/138‑1 (MQ=255)
gtaaCTGTTTACCGGCAA‑GGAGAAACCGCCGCAGCAATCCCGTGAAGGGGCCGCCGTGCCGGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCt < 6:390565/136‑1 (MQ=255)
ggACCTGTTTAACGGCAC‑GGAGAAACCGCCGCAGCAATCCCGTGAAGGTGCCGACGTGCCTGTCGGGCCGCGGGATAAAACCTTCCCGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCt < 6:767383/138‑1 (MQ=255)
ggAACTGTTTAACGGCAA‑GGAGAAACCGCCGCAGCAATCCCGTGAAGGTGACGACGGGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCGGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCt < 6:386299/138‑1 (MQ=255)
ggAACTGTTTAACGCCAC‑GGAGAAACCGCCGCAGCAATCCCGTGACGGTTACGACGTGCCTGTCGGGCCGCTGTATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCt < 8:33754/138‑1 (MQ=255)
gcaaCTGTTAAACGCCAA‑GTCTAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGGGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCt < 1:509222/136‑1 (MQ=255)
aCTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAg > 5:305938/1‑138 (MQ=255)
aCTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAg > 2:724660/1‑138 (MQ=255)
tggttAACGGCAA‑GGACAAACCCCCGCAGCAATCCCGTGACGGTGACGACGGGCCTGTCGGGCCGCTGGATAACCCCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTc < 2:426953/135‑1 (MQ=255)
tgattACCGGCAA‑GGATAAACCGCCGCAGCAAACCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGAAAAACCCTCCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTc < 1:505629/135‑1 (MQ=255)
tGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTc < 2:248534/138‑1 (MQ=255)
tGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGGGACGCCGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTa < 4:434073/140‑1 (MQ=255)
tGTTTAACGGCAA‑GCAGAAAACCCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTc < 2:623265/138‑1 (MQ=255)
tGTTAAACGGCCA‑GGCAAAACCGCCGCCGCAATCCCGTGAAGGTGACGAGGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTc < 8:466618/138‑1 (MQ=255)
ggTTTCACGCCAA‑GGATAAACCGCCGCAGCACTCCCGTGAAGGTTACGACGTGCCGGTCGGGCCGCTGGATAACACCTGCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTc < 8:10990/137‑1 (MQ=255)
gTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTAc < 4:377913/140‑1 (MQ=255)
gTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTAc > 4:106150/1‑140 (MQ=255)
ttAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTc < 6:298446/135‑1 (MQ=255)
ttAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTc > 5:298446/1‑135 (MQ=255)
aCGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGTGGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGa < 8:182512/138‑1 (MQ=255)
aCGGAAA‑GTAGAAAACGCCGCAGCAATCCCGTTATGGTGACGACTTGCGTGTCGGGCGGCTTTTTAAAACTTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACTGCCAGCTGTGTCTACAGaca < 4:943675/140‑2 (MQ=255)
gCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACCGCCAGCTGAGTCTACAGacct > 2:534737/1‑138 (MQ=255)
gCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGacct > 2:780714/1‑138 (MQ=255)
ccAA‑GGACAAACCCCCGCACCAACCCCGTGAAGGTGACCACGGGCCTGTCGGGCCGCTGGATAAACCCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGacct < 7:133695/137‑1 (MQ=255)
cAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGACAGCTGAGTCTACAGacctacc > 3:948524/1‑140 (MQ=255)
a‑GGAGAAACCGCCGCAGCAATCCCGTGACGGTGACGACGTGCCTGTCGGGCGGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCTTCGACAGCCAGCTGAGTCTACAGaccttcgtc < 4:789063/140‑6 (MQ=255)
a‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCAAGCTGAGTCTACAGACCTACCtc > 4:893492/1‑140 (MQ=255)
ggttaaacCGCCGAAGCATCCCTGTGAAGGTGACGAGGGGCGTGTGGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGACCTACCtca < 3:225790/136‑1 (MQ=255)
ggccaaaaCGCCGCCGCAATCCCGTGAAGGTGACGACGGGCCTGTCGGGCCGCTGGATACAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGacctacct < 8:753890/134‑1 (MQ=255)
ggAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGacctacct < 6:113216/138‑1 (MQ=255)
gagaAAACGCAGCAGCAATCCCGTGAAGGTGACGTCGTGCCTGTCGGGCCGCTGGATAAACCCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGACCTACCtc > 5:265593/1‑138 (MQ=255)
aaacCGCCGACGCACACCCGTGAAGGTGACGAGGTGCCTGTCGGGCCGCTGCATAAAACCTTCACGCCGCAGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGACCTACCtcacccg < 3:720169/140‑1 (MQ=255)
|
ATGGCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAA‑GGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGACCTACCTCACCCG > NZ_CP022686/1566079‑1566353
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
