Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A29 F11 I0 R1
|
249 |
11230.8 |
10274356 |
98.4% |
10109966 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,566,217 |
A→C |
13.1% |
T740P (ACG→CCG) |
CIW80_RS07780 → |
ImcF‑related family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,566,217 | 0 | A | C | 13.1%
| 369.5
/ 11.4
| 201 | T740P (ACG→CCG) | CIW80_RS07780 | ImcF‑related family protein |
| Reads supporting (aligned to +/- strand): ref base A (100/69); new base C (2/30); total (102/99) |
| Fisher's exact test for biased strand distribution p-value = 8.83e-09 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 211 total aligned reads displayed.
ATGGCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGACCTACCTCACCCGCG > NZ_CP022686/1566079‑1566355
|
aTGGCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGCCACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAATTCGGCAGAGGAACTGTTTAACGGCAAGGAGAAAAc > 8:574731/1‑140 (MQ=255)
aTGGCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAAc > 2:579934/1‑140 (MQ=255)
aTGGCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAAc > 5:242117/1‑140 (MQ=255)
aTGGCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAAc > 8:293130/1‑140 (MQ=255)
aTGGCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAAc > 6:148295/1‑140 (MQ=255)
tGGCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGCCCCCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTACCGGCAAGGAGAAACcg > 2:1095948/1‑140 (MQ=255)
tGGCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGCCTCGCTGGCGACATCGGCTCAGGATCTGTTTTACGGCAAGGAGaaaagg > 8:223554/1‑138 (MQ=255)
tGGCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGAGAAATCGGCACAGGAACGGTTTACCGGCAAGGAGAAAAcg > 7:1210627/1‑140 (MQ=255)
tGGCCGATGCCAGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGTCAGGGAAAACCTTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGTAACTCTTTAACGGCAAGGAGAAAAcc > 5:551584/1‑139 (MQ=255)
ggCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAAcgc < 6:955738/140‑1 (MQ=255)
ggCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAAcgc < 1:709977/140‑1 (MQ=255)
ggCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAAc > 4:1289826/1‑138 (MQ=255)
ggCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAAc > 3:610846/1‑138 (MQ=255)
ggCCGATGCCCGTCAGGCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAAcgc < 6:831136/140‑1 (MQ=255)
gCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAAcc > 4:79424/1‑137 (MQ=255)
tGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGATAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCgcagg > 1:538762/1‑139 (MQ=255)
tGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAACCCGTGGTCTGTCAGACTCGCTGGCGCAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAACCGCCgcagc > 2:639976/1‑140 (MQ=255)
tGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCgca > 3:1162312/1‑138 (MQ=255)
cccGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCGCTGGAACTGTGTAACGGCAAGGAGAAAACGCCGCAGCaa > 7:158231/1‑140 (MQ=255)
cccGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCaa > 6:1207276/1‑140 (MQ=255)
cccGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCaa < 6:680892/140‑1 (MQ=255)
cccGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCaa < 8:559234/140‑1 (MQ=255)
cccGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGGGGCAGGCGGCGACTGGCTGGGAAAACCGTGGTCGGTCAGCCTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCaa < 7:633562/140‑1 (MQ=255)
cGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAACACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCaa > 3:346234/1‑138 (MQ=255)
cGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCAAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATc > 5:937235/1‑140 (MQ=255)
gTCTCCACTGATTGCGCTGCCGGACACCCTGGCGTGTCAGGAGGCGACAGGACGGGAAAACCGTGGCCTGACAGACTCGCTGGCTAAATCGGCCCAGGAACTGTTTACAGTCAAGGAGAAACCGCCGCAGCAATCCCGTg < 5:1033541/140‑1 (MQ=255)
gCCACTGATTGCGCTGACGGCCACCCTCGCGTGGCAGGAGGCGACAGGCAGGGAAAACCGTGGTCTGTCATACTCGCTTGCGAAATCGGCACAGGAACTGATTTACGGAAAGGAGAAAACCCCGCAGCAATCCCGTGAAg > 7:1132789/1‑140 (MQ=255)
gCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGACCTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGa > 4:499131/1‑138 (MQ=255)
aCTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGGTTAACGGCAAGGAGAAAACGCCGCAGCACTCCCGTGAAgg > 3:695079/1‑138 (MQ=255)
taTTGCGCTGAGGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTgacg < 2:237080/139‑1 (MQ=255)
taTTGCGCCGACGGACACCCTCGCGTGGCAGGGGGCGTCATGCAGGTAAAACCGTGGTCTGTCAGACTCGGGGGGTAAATCGGCACTGTAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTgacg < 5:1258431/139‑1 (MQ=255)
aTTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGCCAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAAAGGCAAGGAGAAAACACCGCAGCAATCCCGTGAAGGTgac > 3:890345/1‑138 (MQ=255)
aTTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTgacga > 2:1014302/1‑140 (MQ=255)
cGGCCACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGCCTCGCTGGCGAAATCGGCACAGGAACTGTTGAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGCCGACGTGCCTGTc > 6:601399/1‑140 (MQ=255)
acacCCTCGCGTGGCAGGCGGCTAAAGGCAGTGAAAACCGTGGTCGGCCAGACTCGCTGGAGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAACCGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCggg < 2:1076516/140‑1 (MQ=255)
acCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGcc > 1:909107/1‑140 (MQ=255)
acCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGcc > 5:89687/1‑140 (MQ=255)
cccTCGCGTGGCTTGCGTCTACAGGCAGTGAAAAACGTGGTCTGTCATACTCTCGTGCGAAAACGGAACAGTAACTGTTTAACTGCAATGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCg < 7:982558/140‑1 (MQ=255)
cccTCGCGTGGCTGGCGCCGACTGGCAGGGAAAACGGTGTTCTGTCTGAATCGCGGGCGAAATCGGCACAGTAACTGTTTAACGGACATGATAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCg < 1:339320/140‑1 (MQ=255)
cccTCGCGTGGCAGGCGGCGACAGGCAGGGAAACCCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGTAACTGTTTAACGGCAAGTAGAACACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCg < 5:1069484/140‑1 (MQ=255)
ccTCGCGTGGCAGGCGGCGACAGGCAGGTAAAACCGTGGTCTGTCAGACGCGCTGGCGAAATCGGCACAGGAACTTTTAAACGGCAAGGAGAAACCGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGc < 5:1202270/140‑1 (MQ=255)
tCGCGTGGCAGGCGGCGACAGGCAGGGAACACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTg > 8:453941/1‑140 (MQ=255)
tCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCTCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTg > 2:285138/1‑140 (MQ=255)
gcgTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTg > 3:1242398/1‑138 (MQ=255)
cAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGCCGACGTGCCTGTCGGGCCGCTGGATAAAAc > 2:927925/1‑140 (MQ=255)
ggcggcGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCt > 8:117905/1‑140 (MQ=255)
gcggcgACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCtt > 1:1010940/1‑140 (MQ=255)
ggcgACAGGCAGGTAAAACCGGGGTCTGTAAGACTCGCTGGCTAAAGCGGCACAGGAACTGTTTACCGGAATGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGTATAAAACCTTCa < 5:599550/140‑1 (MQ=255)
ggcgAAAGGCATGTAAAACCGTGGTCTGTCAGAATCGATGGCTAAATCGGCACAGTAACTGTTTAACGGCAAGGATAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGGCGGGCCGCTGGATAAAACCTTCa < 8:814874/140‑1 (MQ=255)
cgACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCAcg < 8:172614/140‑1 (MQ=255)
gACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGAGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCAcgc > 7:52314/1‑140 (MQ=255)
ccGTGGGCGGTCCGACTCGCGGGCGAAATCGCCCCAGGAACTGTTTAACGGCACGGAGAAAACCCCGCTGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGc < 8:495850/140‑1 (MQ=255)
cGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTg > 7:857249/1‑79 (MQ=255)
gTGGGCTGTCAGACTCGCGGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAACCGCCGCAGCAATCCCGTGAAGGGGACGACGGGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTg < 2:30660/140‑1 (MQ=255)
ggTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTggg > 6:445709/1‑140 (MQ=255)
ggTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTggg > 2:751461/1‑140 (MQ=255)
ggTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTggg > 2:504900/1‑140 (MQ=255)
tCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTggg > 4:369903/1‑138 (MQ=255)
ggccAGACTCGGTGGCGAAATCGGCACATGAACTGTTTACCGGCAAGTAGAACCCGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGGCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGAt < 8:209799/137‑1 (MQ=255)
tCAGACTCGCTGGCGAAATCGGCACAGGCACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGCCGACGTGCCTGTCGGGCCGCTGGAGAAAACCTTCACGCCGCTGCTGCGTTTGCGGGGCGATaa > 1:381021/1‑140 (MQ=255)
tCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAGACGCCGCAGCACTCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATaa > 6:935778/1‑140 (MQ=255)
tCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATaa > 5:682212/1‑140 (MQ=255)
tCAGACTCGCTGGCGAAATCGGCACAGGAACTGGTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGCCGTGCCTGTCGGGCCGCTGGAGACACCCTTCACGCCGCTGCTGCGTTTGCGGGGCGATaa > 6:488702/1‑140 (MQ=255)
tGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGCCGACGTGCCTGTCGGGCCGCTGGATAAACCCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAggc > 6:1000293/1‑140 (MQ=255)
tGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAggc > 1:79568/1‑140 (MQ=255)
tGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAggc > 5:1098062/1‑140 (MQ=255)
tGGCGAAATCGGAACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGAGAAAACATTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAggc > 5:763637/1‑140 (MQ=255)
cGGCACAGGAACTTTTTAACGGCAAGGATAACACGCCGCAGCAATCCCGTGACGGTGACGACGGGCCTGGCGGGCCGCGGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGAcagc < 7:778131/140‑1 (MQ=255)
ccaaaGGAACTGTTTAACGCCAAGCAGAAACCGCCGCAGCAATCCCGTGAAGGTGACGACGGGCCTGTCGGGCCGCTGGATAAAACCTGCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGAcagcca < 6:1061981/136‑1 (MQ=255)
ctggAACTGTTTAACGGCAAGCAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGGCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCt < 6:534012/138‑1 (MQ=255)
ccggACCTGTTTACCGCCAAGGCGAAACCGCCGCAGCAATCCCGGGACGGGGACGCCGTGCCGGGCGGGCCGCTGGATAACACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCt < 6:230951/138‑1 (MQ=255)
caGGAACTGTTTAAGGGCACTGAGAAAACGCCGTACCAATCCCGTGAAGGTGACGAGGTGCCTGGCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCt < 2:1162752/140‑1 (MQ=255)
cggAACTGTTTACCGGCACGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGCCGACGTGCCTGTGGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGAcagccagc < 4:267368/137‑1 (MQ=255)
ggAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGGGAAGGTGACGACGGGCCTGTCGGGCCGCTGGATAAACCCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGa < 2:939268/140‑1 (MQ=255)
ggAACTGTTTAACGGCAAGGACAAAACGCCGCAGCAATCCCGTGAAGGGGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCt < 4:641697/138‑1 (MQ=255)
ggAACTGTTAAACGGCACGGACAAACCGCCGCAGCAATCCCGTGACGGGGACGACGTGCCTGGCGGGCCGCTGGAAAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGa < 2:870470/140‑1 (MQ=255)
ccaaCGGTTAACCGCCAAGCACAAACCCCCGCACCAATCCCGGGAAGGTGACGACGTGCCTGTCGGGCCTGTGGATAAAACCATCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGa < 1:979425/138‑1 (MQ=255)
tGTTTACCGGCAAGGAGAAAACGACGCAGCAATCCCGTGAAGGTTACGAGGGTCCTGTCGGGCCGCTGGTTAAAACCTTCACGCCGCTGCTGCGTTTGCTGGTCGATAAGGCCGGAGGCGGCGACATCCAGCTGAGTCTa < 2:1229197/140‑1 (MQ=255)
tGTTTAACGGCATGGATAAAACGCCGCAGCATTCCCGGGATGGTGACGACGTGCCTGTCGGGCCTCTGGATAAACCCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTc < 4:672851/138‑1 (MQ=255)
tGTTTAACGGCAAGGAGAACACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTc < 4:1232156/138‑1 (MQ=255)
tGTTTAACGGCAAGCAGAAAACGCCGCCGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCGGGAAAAACCCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTa < 6:763645/140‑1 (MQ=255)
tGTTAATCGGCACCGAGATAACGCCGCTGCAATCCGGGGAAGTTGACGACGTGCCGGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCGGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTc < 3:196117/138‑1 (MQ=255)
tGTATACCGGCAAGGACAAAACCCCGCAGCAATCCCGTGAAGGTGACGACGTGCCGGGCGGGCCGCTGGATAACACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTa < 5:33569/140‑1 (MQ=255)
cgTTTAACGCCAAGGACAAAACGCCGCTGCAATCCCGTGATGGTGACGACGCCCCGGTCGGGCCGCTTGATAAACCCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTa < 7:191704/139‑1 (MQ=255)
tatataCGGCAAGCTGAAAACCCCTCAGAAATCCGGTGATGTTGACGAACTGCCTGACGGGCCGCGGTAAAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTAc < 6:1015720/135‑1 (MQ=255)
tAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACa < 4:715940/138‑1 (MQ=255)
aaaCGCCACGGACAAACCGCCGAAGAATTCCCGTGAAGGTGAGGACGTGCCTGGCGGGCCGCTGTATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGa < 8:662139/139‑1 (MQ=255)
aCGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGGCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGacc < 2:361095/140‑1 (MQ=255)
cGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTCCAGacct > 6:438401/1‑140 (MQ=255)
cGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGacct > 1:115456/1‑140 (MQ=255)
gCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATATGGCCGGAGGCGGCGCCAGCCAGCTGAGTCTACAGccct > 3:1309581/1‑138 (MQ=255)
cAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGacctacc > 6:719366/1‑140 (MQ=255)
cAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGacctacc > 8:384750/1‑140 (MQ=255)
aGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAACCCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGACCTACCtc > 6:55303/1‑140 (MQ=255)
aGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGACCTACCtc > 1:1048139/1‑140 (MQ=255)
gagaAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGACCTACCtc > 4:892154/1‑138 (MQ=255)
tgaAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTTGCGGGCCGCGGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGACCTACCtca < 4:1090746/137‑1 (MQ=255)
ccaaacCGCCGCAGCAAGCCCGTGACGGGGACGACGGGCCTGGCGGGCCGCTGGATAAAACCTGCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGACCTACCtcacc < 1:1316851/138‑1 (MQ=255)
aaaaCGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGACCTACCtcacccg > 7:585607/1‑140 (MQ=255)
aaCGCCGCTCTATTCCCGTCATGGTGAGGACTGGCCTGTCTGGCCGGTGGATAAATCGTTCTCGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGTGTCTACAGACCTACCtcacccgcg < 2:164287/140‑1 (MQ=255)
|
ATGGCCGATGCCCGTCAGTCGCCACTGATTGCGCTGACGGACACCCTCGCGTGGCAGGCGGCGACAGGCAGGGAAAACCGTGGTCTGTCAGACTCGCTGGCGAAATCGGCACAGGAACTGTTTAACGGCAAGGAGAAAACGCCGCAGCAATCCCGTGAAGGTGACGACGTGCCTGTCGGGCCGCTGGATAAAACCTTCACGCCGCTGCTGCGTTTGCTGGGCGATAAGGCCGGAGGCGGCGACAGCCAGCTGAGTCTACAGACCTACCTCACCCGCG > NZ_CP022686/1566079‑1566355
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
